National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9   1                                
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                       1            
Q   18                                    
R   6                                    
S   30         1                          
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Hungary 11843 T 278 278
1 Hungary 11844 C 278 278
2 Hungary 11845 T 278 278
3 Hungary 11846 A 278 278
4 Hungary 11847 A 278 278
5 Hungary 11848 A 278 278
6 Hungary 11849 A 278 278
7 Hungary 11850 T 278 278
8 Hungary 11851 G 278 278
9 Hungary 11852 T 278 278
10 Hungary 11853 C 278 278
11 Hungary 11854 A 278 278
12 Hungary 11855 G 278 278
13 Hungary 11856 A 278 278
14 Hungary 11857 T 278 278
15 Hungary 11858 G 278 278
16 Hungary 11859 T 278 278
17 Hungary 11860 A 278 278
18 Hungary 11861 A 278 278
19 Hungary 11862 A 278 278
20 Hungary 11863 G 278 278
21 Hungary 11864 T 278 278
22 Hungary 11865 G 278 278
23 Hungary 11866 C T 278 277 Cys3867Cys
24 Hungary 11867 A 278 278
25 Hungary 11868 C 278 278
26 Hungary 11869 A 278 278
27 Hungary 11870 T 278 278
28 Hungary 11871 C 278 278
29 Hungary 11872 A 278 278
30 Hungary 11873 G 278 278
31 Hungary 11874 T 278 278
32 Hungary 11875 A 278 278
33 Hungary 11876 G 278 278
34 Hungary 11877 T 278 278
35 Hungary 11878 C 278 278
36 Hungary 11879 T 278 278
37 Hungary 11880 T 278 278
38 Hungary 11881 A 278 278
39 Hungary 11882 C 278 278
40 Hungary 11883 T 278 278
41 Hungary 11884 C 278 278
42 Hungary 11885 T 278 278
43 Hungary 11886 C 278 278
44 Hungary 11887 A 278 278
45 Hungary 11888 G 278 278
46 Hungary 11889 T 278 278
47 Hungary 11890 T 278 278
48 Hungary 11891 T 278 278
49 Hungary 11892 T 278 278
50 Hungary 11893 G 278 278
51 Hungary 11894 C 278 278
52 Hungary 11895 A 278 278
53 Hungary 11896 A 278 278
54 Hungary 11897 C 278 278
55 Hungary 11898 A 278 278
56 Hungary 11899 A 278 278
57 Hungary 11900 C 278 278
58 Hungary 11901 T 278 278
59 Hungary 11902 C 278 278
60 Hungary 11903 A 278 278
61 Hungary 11904 G 278 278
62 Hungary 11905 A 278 278
63 Hungary 11906 G 278 278
64 Hungary 11907 T 278 278
65 Hungary 11908 A 278 278
66 Hungary 11909 G 278 278
67 Hungary 11910 A 278 278
68 Hungary 11911 A 278 278
69 Hungary 11912 T 278 278
70 Hungary 11913 C 278 278
71 Hungary 11914 A 278 278
72 Hungary 11915 T 278 278
73 Hungary 11916 C 278 278
74 Hungary 11917 A 278 278
75 Hungary 11918 T 278 278
76 Hungary 11919 C T 278 277 Ser3885Phe
77 Hungary 11920 T 278 278
78 Hungary 11921 A 278 278
79 Hungary 11922 A 278 278
80 Hungary 11923 A 278 278
81 Hungary 11924 T 278 278
82 Hungary 11925 T 278 278
83 Hungary 11926 G 278 278
84 Hungary 11927 T 278 278
85 Hungary 11928 G 278 278
86 Hungary 11929 G 278 278
87 Hungary 11930 G 278 278
88 Hungary 11931 C 278 278
89 Hungary 11932 T 278 278
90 Hungary 11933 C 278 278
91 Hungary 11934 A 278 278
92 Hungary 11935 A 278 278
93 Hungary 11936 T 278 278
94 Hungary 11937 G 278 278
95 Hungary 11938 T 278 278
96 Hungary 11939 G 278 278
97 Hungary 11940 T 278 278
98 Hungary 11941 C 278 278
99 Hungary 11942 C 278 278
100 Hungary 11943 A 278 278
101 Hungary 11944 G 278 278
102 Hungary 11945 T 278 278
103 Hungary 11946 T 278 278
104 Hungary 11947 A 278 278
105 Hungary 11948 C 278 278
106 Hungary 11949 A 278 278
107 Hungary 11950 C 278 278
108 Hungary 11951 A 278 278
109 Hungary 11952 A 278 278
110 Hungary 11953 T 278 278
111 Hungary 11954 G 278 278
112 Hungary 11955 A 278 278
113 Hungary 11956 C 278 278
114 Hungary 11957 A 278 278
115 Hungary 11958 T 278 278
116 Hungary 11959 T 278 278
117 Hungary 11960 C 278 278
118 Hungary 11961 T 278 278
119 Hungary 11962 C 278 278
120 Hungary 11963 T 278 278
121 Hungary 11964 T 278 278
122 Hungary 11965 A 278 278
123 Hungary 11966 G 278 278
124 Hungary 11967 C 278 278
125 Hungary 11968 T 278 278
126 Hungary 11969 A 278 278
127 Hungary 11970 A 278 278
128 Hungary 11971 A 278 278
129 Hungary 11972 G 278 278
130 Hungary 11973 A 278 278
131 Hungary 11974 T 278 278
132 Hungary 11975 A 278 278
133 Hungary 11976 C 278 278
134 Hungary 11977 T 278 278
135 Hungary 11978 A 278 278
136 Hungary 11979 C 278 278
137 Hungary 11980 T 278 278
138 Hungary 11981 G 278 278
139 Hungary 11982 A 278 278
140 Hungary 11983 A 278 278
141 Hungary 11984 G 278 278
142 Hungary 11985 C 278 278
143 Hungary 11986 C 278 278
144 Hungary 11987 T 278 278
145 Hungary 11988 T 278 278
146 Hungary 11989 T 278 278
147 Hungary 11990 G 278 278
148 Hungary 11991 A 278 278
149 Hungary 11992 A 278 278
150 Hungary 11993 A 278 278
151 Hungary 11994 A 278 278
152 Hungary 11995 A 278 278
153 Hungary 11996 A 278 278
154 Hungary 11997 T 278 278
155 Hungary 11998 G 278 278
156 Hungary 11999 G 278 278
157 Hungary 12000 T 278 278
158 Hungary 12001 T 278 278
159 Hungary 12002 T 278 278
160 Hungary 12003 C 278 278
161 Hungary 12004 A 278 278
162 Hungary 12005 C 278 278
163 Hungary 12006 T 278 278
164 Hungary 12007 A 278 278
165 Hungary 12008 C 278 278
166 Hungary 12009 T 278 278
167 Hungary 12010 T 278 278
168 Hungary 12011 T 278 278
169 Hungary 12012 C 278 278
170 Hungary 12013 T 278 278
171 Hungary 12014 G 278 278
172 Hungary 12015 T 278 278
173 Hungary 12016 T 278 278
174 Hungary 12017 T 278 278
175 Hungary 12018 T 278 278
176 Hungary 12019 G 278 278
177 Hungary 12020 C 278 278
178 Hungary 12021 T 278 278
179 Hungary 12022 T 278 278
180 Hungary 12023 T 278 278
181 Hungary 12024 C 278 278
182 Hungary 12025 C 278 278
183 Hungary 12026 A 278 278
184 Hungary 12027 T 278 278
185 Hungary 12028 G 278 278
186 Hungary 12029 C 278 278
187 Hungary 12030 A 278 278
188 Hungary 12031 G 278 278
189 Hungary 12032 G 278 278
190 Hungary 12033 G 278 278
191 Hungary 12034 T 278 278
192 Hungary 12035 G 278 278
193 Hungary 12036 C 278 278
194 Hungary 12037 T 278 278
195 Hungary 12038 G 278 278
196 Hungary 12039 T 278 278
197 Hungary 12040 A 278 278
198 Hungary 12041 G 278 278
199 Hungary 12042 A 278 278
200 Hungary 12043 C 278 278
201 Hungary 12044 A 278 278
202 Hungary 12045 T 278 278
203 Hungary 12046 A 278 278
204 Hungary 12047 A 278 278
205 Hungary 12048 A 278 278
206 Hungary 12049 C T 278 277 Asn3928Asn
207 Hungary 12050 A 278 278
208 Hungary 12051 A 278 278
209 Hungary 12052 G 278 278
210 Hungary 12053 C 278 278
211 Hungary 12054 T 278 278
212 Hungary 12055 T 278 278
213 Hungary 12056 T 278 278
214 Hungary 12057 G 278 278
215 Hungary 12058 T 278 278
216 Hungary 12059 G 278 278
217 Hungary 12060 A 278 278
218 Hungary 12061 A 278 278
219 Hungary 12062 G 278 278
220 Hungary 12063 A 278 278
221 Hungary 12064 A 278 278
222 Hungary 12065 A 278 278
223 Hungary 12066 T 278 278
224 Hungary 12067 G 278 278
225 Hungary 12068 C 278 278
226 Hungary 12069 T 278 278
227 Hungary 12070 G 278 278
228 Hungary 12071 G 278 278
229 Hungary 12072 A 278 278
230 Hungary 12073 C 278 278
231 Hungary 12074 A 278 278
232 Hungary 12075 A 278 278
233 Hungary 12076 C 278 278
234 Hungary 12077 A 278 278
235 Hungary 12078 G 278 278
236 Hungary 12079 G 278 278
237 Hungary 12080 G 278 278
238 Hungary 12081 C 278 278
239 Hungary 12082 A 278 278
240 Hungary 12083 A 278 278
241 Hungary 12084 C 278 278
242 Hungary 12085 C 278 278
243 Hungary 12086 T 278 278
244 Hungary 12087 T 278 278
245 Hungary 12088 A 278 278
246 Hungary 12089 C 278 278
247 Hungary 12090 A 278 278
248 Hungary 12091 A 278 278