National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                   1                
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Guatemala 11843 T 32 32
1 Guatemala 11844 C 32 32
2 Guatemala 11845 T 32 32
3 Guatemala 11846 A 32 32
4 Guatemala 11847 A 32 32
5 Guatemala 11848 A 32 32
6 Guatemala 11849 A 32 32
7 Guatemala 11850 T 32 32
8 Guatemala 11851 G 32 32
9 Guatemala 11852 T 32 32
10 Guatemala 11853 C 32 32
11 Guatemala 11854 A 32 32
12 Guatemala 11855 G 32 32
13 Guatemala 11856 A 32 32
14 Guatemala 11857 T 32 32
15 Guatemala 11858 G 32 32
16 Guatemala 11859 T 32 32
17 Guatemala 11860 A 32 32
18 Guatemala 11861 A 32 32
19 Guatemala 11862 A 32 32
20 Guatemala 11863 G 32 32
21 Guatemala 11864 T 32 32
22 Guatemala 11865 G 32 32
23 Guatemala 11866 C 32 32
24 Guatemala 11867 A 32 32
25 Guatemala 11868 C 32 32
26 Guatemala 11869 A 32 32
27 Guatemala 11870 T 32 32
28 Guatemala 11871 C 32 32
29 Guatemala 11872 A 32 32
30 Guatemala 11873 G 32 32
31 Guatemala 11874 T 32 32
32 Guatemala 11875 A 32 32
33 Guatemala 11876 G 32 32
34 Guatemala 11877 T 32 32
35 Guatemala 11878 C 32 32
36 Guatemala 11879 T 32 32
37 Guatemala 11880 T 32 32
38 Guatemala 11881 A 32 32
39 Guatemala 11882 C 32 32
40 Guatemala 11883 T 32 32
41 Guatemala 11884 C 32 32
42 Guatemala 11885 T 32 32
43 Guatemala 11886 C 32 32
44 Guatemala 11887 A 32 32
45 Guatemala 11888 G 32 32
46 Guatemala 11889 T 32 32
47 Guatemala 11890 T 32 32
48 Guatemala 11891 T 32 32
49 Guatemala 11892 T 32 32
50 Guatemala 11893 G 32 32
51 Guatemala 11894 C 32 32
52 Guatemala 11895 A 32 32
53 Guatemala 11896 A 32 32
54 Guatemala 11897 C 32 32
55 Guatemala 11898 A 32 32
56 Guatemala 11899 A 32 32
57 Guatemala 11900 C 32 32
58 Guatemala 11901 T 32 32
59 Guatemala 11902 C 32 32
60 Guatemala 11903 A 32 32
61 Guatemala 11904 G 32 32
62 Guatemala 11905 A 32 32
63 Guatemala 11906 G 32 32
64 Guatemala 11907 T 32 32
65 Guatemala 11908 A 32 32
66 Guatemala 11909 G 32 32
67 Guatemala 11910 A 32 32
68 Guatemala 11911 A 32 32
69 Guatemala 11912 T 32 32
70 Guatemala 11913 C 32 32
71 Guatemala 11914 A 32 32
72 Guatemala 11915 T 32 32
73 Guatemala 11916 C 32 32
74 Guatemala 11917 A 32 32
75 Guatemala 11918 T 32 32
76 Guatemala 11919 C 32 32
77 Guatemala 11920 T 32 32
78 Guatemala 11921 A 32 32
79 Guatemala 11922 A 32 32
80 Guatemala 11923 A 32 32
81 Guatemala 11924 T 32 32
82 Guatemala 11925 T 32 32
83 Guatemala 11926 G 32 32
84 Guatemala 11927 T 32 32
85 Guatemala 11928 G 32 32
86 Guatemala 11929 G 32 32
87 Guatemala 11930 G 32 32
88 Guatemala 11931 C 32 32
89 Guatemala 11932 T 32 32
90 Guatemala 11933 C 32 32
91 Guatemala 11934 A 32 32
92 Guatemala 11935 A 32 32
93 Guatemala 11936 T 32 32
94 Guatemala 11937 G 32 32
95 Guatemala 11938 T 32 32
96 Guatemala 11939 G 32 32
97 Guatemala 11940 T 32 32
98 Guatemala 11941 C 32 32
99 Guatemala 11942 C 32 32
100 Guatemala 11943 A 32 32
101 Guatemala 11944 G 32 32
102 Guatemala 11945 T 32 32
103 Guatemala 11946 T 32 32
104 Guatemala 11947 A 32 32
105 Guatemala 11948 C 32 32
106 Guatemala 11949 A 32 32
107 Guatemala 11950 C 32 32
108 Guatemala 11951 A 32 32
109 Guatemala 11952 A 32 32
110 Guatemala 11953 T 32 32
111 Guatemala 11954 G 32 32
112 Guatemala 11955 A 32 32
113 Guatemala 11956 C 32 32
114 Guatemala 11957 A 32 32
115 Guatemala 11958 T 32 32
116 Guatemala 11959 T 32 32
117 Guatemala 11960 C 32 32
118 Guatemala 11961 T 32 32
119 Guatemala 11962 C 32 32
120 Guatemala 11963 T 32 32
121 Guatemala 11964 T 32 32
122 Guatemala 11965 A 32 32
123 Guatemala 11966 G 32 32
124 Guatemala 11967 C 32 32
125 Guatemala 11968 T 32 32
126 Guatemala 11969 A 32 32
127 Guatemala 11970 A 32 32
128 Guatemala 11971 A 32 32
129 Guatemala 11972 G 32 32
130 Guatemala 11973 A 32 32
131 Guatemala 11974 T 32 32
132 Guatemala 11975 A 32 32
133 Guatemala 11976 C 32 32
134 Guatemala 11977 T 32 32
135 Guatemala 11978 A 32 32
136 Guatemala 11979 C 32 32
137 Guatemala 11980 T 32 32
138 Guatemala 11981 G 32 32
139 Guatemala 11982 A 32 32
140 Guatemala 11983 A 32 32
141 Guatemala 11984 G 32 32
142 Guatemala 11985 C 32 32
143 Guatemala 11986 C 32 32
144 Guatemala 11987 T 32 32
145 Guatemala 11988 T 32 32
146 Guatemala 11989 T 32 32
147 Guatemala 11990 G 32 32
148 Guatemala 11991 A 32 32
149 Guatemala 11992 A 32 32
150 Guatemala 11993 A 32 32
151 Guatemala 11994 A 32 32
152 Guatemala 11995 A 32 32
153 Guatemala 11996 A 32 32
154 Guatemala 11997 T 32 32
155 Guatemala 11998 G 32 32
156 Guatemala 11999 G 32 32
157 Guatemala 12000 T 32 32
158 Guatemala 12001 T 32 32
159 Guatemala 12002 T 32 32
160 Guatemala 12003 C 32 32
161 Guatemala 12004 A 32 32
162 Guatemala 12005 C 32 32
163 Guatemala 12006 T 32 32
164 Guatemala 12007 A 32 32
165 Guatemala 12008 C 32 32
166 Guatemala 12009 T 32 32
167 Guatemala 12010 T 32 32
168 Guatemala 12011 T 32 32
169 Guatemala 12012 C 32 32
170 Guatemala 12013 T 32 32
171 Guatemala 12014 G 32 32
172 Guatemala 12015 T 32 32
173 Guatemala 12016 T 32 32
174 Guatemala 12017 T 32 32
175 Guatemala 12018 T 32 32
176 Guatemala 12019 G 32 32
177 Guatemala 12020 C 32 32
178 Guatemala 12021 T 32 32
179 Guatemala 12022 T 32 32
180 Guatemala 12023 T 32 32
181 Guatemala 12024 C 32 32
182 Guatemala 12025 C 32 32
183 Guatemala 12026 A 32 32
184 Guatemala 12027 T 32 32
185 Guatemala 12028 G 32 32
186 Guatemala 12029 C 32 32
187 Guatemala 12030 A 32 32
188 Guatemala 12031 G 32 32
189 Guatemala 12032 G 32 32
190 Guatemala 12033 G 32 32
191 Guatemala 12034 T 32 32
192 Guatemala 12035 G 32 32
193 Guatemala 12036 C 32 32
194 Guatemala 12037 T 32 32
195 Guatemala 12038 G 32 32
196 Guatemala 12039 T 32 32
197 Guatemala 12040 A 32 32
198 Guatemala 12041 G 32 32
199 Guatemala 12042 A 32 32
200 Guatemala 12043 C 32 32
201 Guatemala 12044 A 32 32
202 Guatemala 12045 T 32 32
203 Guatemala 12046 A 32 32
204 Guatemala 12047 A 32 32
205 Guatemala 12048 A 32 32
206 Guatemala 12049 C 32 32
207 Guatemala 12050 A 32 32
208 Guatemala 12051 A 32 32
209 Guatemala 12052 G 32 32
210 Guatemala 12053 C 32 32
211 Guatemala 12054 T 32 32
212 Guatemala 12055 T 32 32
213 Guatemala 12056 T 32 32
214 Guatemala 12057 G 32 32
215 Guatemala 12058 T 32 32
216 Guatemala 12059 G 32 32
217 Guatemala 12060 A 32 32
218 Guatemala 12061 A 32 32
219 Guatemala 12062 G 32 32
220 Guatemala 12063 A 32 32
221 Guatemala 12064 A 32 32
222 Guatemala 12065 A 32 32
223 Guatemala 12066 T 32 32
224 Guatemala 12067 G 32 32
225 Guatemala 12068 C T 32 31 Leu3935Leu
226 Guatemala 12069 T 32 32
227 Guatemala 12070 G 32 32
228 Guatemala 12071 G 32 32
229 Guatemala 12072 A 32 32
230 Guatemala 12073 C 32 32
231 Guatemala 12074 A 32 32
232 Guatemala 12075 A 32 32
233 Guatemala 12076 C 32 32
234 Guatemala 12077 A 32 32
235 Guatemala 12078 G 32 32
236 Guatemala 12079 G 32 32
237 Guatemala 12080 G 32 32
238 Guatemala 12081 C 32 32
239 Guatemala 12082 A 32 32
240 Guatemala 12083 A 32 32
241 Guatemala 12084 C 32 32
242 Guatemala 12085 C 32 32
243 Guatemala 12086 T 32 32
244 Guatemala 12087 T 32 32
245 Guatemala 12088 A 32 32
246 Guatemala 12089 C 32 32
247 Guatemala 12090 A 32 32
248 Guatemala 12091 A 32 32