National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15     1                              
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                               1    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Greece 11843 T 139 139
1 Greece 11844 C 139 139
2 Greece 11845 T 139 139
3 Greece 11846 A 139 139
4 Greece 11847 A 139 139
5 Greece 11848 A 139 139
6 Greece 11849 A 139 139
7 Greece 11850 T 139 139
8 Greece 11851 G 139 139
9 Greece 11852 T 139 139
10 Greece 11853 C 139 139
11 Greece 11854 A 139 139
12 Greece 11855 G 139 139
13 Greece 11856 A 139 139
14 Greece 11857 T 139 139
15 Greece 11858 G 139 139
16 Greece 11859 T 139 139
17 Greece 11860 A 139 139
18 Greece 11861 A 139 139
19 Greece 11862 A 139 139
20 Greece 11863 G 139 139
21 Greece 11864 T 140 140
22 Greece 11865 G 140 140
23 Greece 11866 C 140 140
24 Greece 11867 A 140 140
25 Greece 11868 C 140 140
26 Greece 11869 A 140 140
27 Greece 11870 T 140 140
28 Greece 11871 C 140 140
29 Greece 11872 A 140 140
30 Greece 11873 G 140 140
31 Greece 11874 T 140 140
32 Greece 11875 A 140 140
33 Greece 11876 G 140 140
34 Greece 11877 T 140 140
35 Greece 11878 C 140 140
36 Greece 11879 T 140 140
37 Greece 11880 T 140 140
38 Greece 11881 A 140 140
39 Greece 11882 C 140 140
40 Greece 11883 T 140 140
41 Greece 11884 C 140 140
42 Greece 11885 T 140 140
43 Greece 11886 C 140 140
44 Greece 11887 A 140 140
45 Greece 11888 G 139 138
46 Greece 11889 T 139 138
47 Greece 11890 T 139 138
48 Greece 11891 T 139 138
49 Greece 11892 T 139 138
50 Greece 11893 G 139 138
51 Greece 11894 C 139 138
52 Greece 11895 A 139 138
53 Greece 11896 A 139 138
54 Greece 11897 C 139 138
55 Greece 11898 A 139 138
56 Greece 11899 A 139 138
57 Greece 11900 C 139 138
58 Greece 11901 T 139 138
59 Greece 11902 C 139 138
60 Greece 11903 A 139 138
61 Greece 11904 G 139 138
62 Greece 11905 A 139 138
63 Greece 11906 G 139 138
64 Greece 11907 T 139 138
65 Greece 11908 A 139 138
66 Greece 11909 G 139 138
67 Greece 11910 A 139 138
68 Greece 11911 A 139 138
69 Greece 11912 T 139 138
70 Greece 11913 C 139 138
71 Greece 11914 A 139 138
72 Greece 11915 T 139 138
73 Greece 11916 C 139 138
74 Greece 11917 A 139 138
75 Greece 11918 T 139 138
76 Greece 11919 C 139 138
77 Greece 11920 T 139 138
78 Greece 11921 A 139 138
79 Greece 11922 A 139 138
80 Greece 11923 A 139 138
81 Greece 11924 T 139 138
82 Greece 11925 T 139 138
83 Greece 11926 G 139 139
84 Greece 11927 T 139 139
85 Greece 11928 G 139 139
86 Greece 11929 G 139 139
87 Greece 11930 G 139 139
88 Greece 11931 C 139 139
89 Greece 11932 T 139 139
90 Greece 11933 C 139 139
91 Greece 11934 A 139 139
92 Greece 11935 A 139 139
93 Greece 11936 T 139 139
94 Greece 11937 G 139 139
95 Greece 11938 T 139 139
96 Greece 11939 G 139 139
97 Greece 11940 T 139 139
98 Greece 11941 C 139 139
99 Greece 11942 C 139 139
100 Greece 11943 A 139 139
101 Greece 11944 G 139 139
102 Greece 11945 T 139 139
103 Greece 11946 T 139 139
104 Greece 11947 A 139 139
105 Greece 11948 C 139 139
106 Greece 11949 A 139 139
107 Greece 11950 C 139 139
108 Greece 11951 A 139 139
109 Greece 11952 A 139 139
110 Greece 11953 T 139 139
111 Greece 11954 G 139 139
112 Greece 11955 A 139 139
113 Greece 11956 C 139 139
114 Greece 11957 A 139 139
115 Greece 11958 T 139 139
116 Greece 11959 T 139 139
117 Greece 11960 C 139 139
118 Greece 11961 T 139 139
119 Greece 11962 C 139 139
120 Greece 11963 T 139 139
121 Greece 11964 T 139 139
122 Greece 11965 A 139 139
123 Greece 11966 G 139 139
124 Greece 11967 C 139 139
125 Greece 11968 T 139 139
126 Greece 11969 A 139 139
127 Greece 11970 A 139 139
128 Greece 11971 A 139 139
129 Greece 11972 G 139 139
130 Greece 11973 A 139 139
131 Greece 11974 T 139 139
132 Greece 11975 A 139 139
133 Greece 11976 C 139 139
134 Greece 11977 T 139 139
135 Greece 11978 A 139 139
136 Greece 11979 C 139 139
137 Greece 11980 T 139 139
138 Greece 11981 G 139 139
139 Greece 11982 A 139 139
140 Greece 11983 A 139 139
141 Greece 11984 G 139 139
142 Greece 11985 C 139 139
143 Greece 11986 C 139 139
144 Greece 11987 T 139 139
145 Greece 11988 T 139 139
146 Greece 11989 T 139 139
147 Greece 11990 G 139 139
148 Greece 11991 A 139 139
149 Greece 11992 A 139 139
150 Greece 11993 A 139 139
151 Greece 11994 A 139 139
152 Greece 11995 A 139 139
153 Greece 11996 A 139 139
154 Greece 11997 T 139 139
155 Greece 11998 G 139 139
156 Greece 11999 G 139 139
157 Greece 12000 T 139 139
158 Greece 12001 T 139 139
159 Greece 12002 T 139 139
160 Greece 12003 C 139 139
161 Greece 12004 A 139 139
162 Greece 12005 C 139 139
163 Greece 12006 T 139 139
164 Greece 12007 A 139 139
165 Greece 12008 C 139 139
166 Greece 12009 T 139 139
167 Greece 12010 T 139 139
168 Greece 12011 T 139 139
169 Greece 12012 C 139 139
170 Greece 12013 T 139 139
171 Greece 12014 G 139 139
172 Greece 12015 T 139 139
173 Greece 12016 T 139 139
174 Greece 12017 T 139 139
175 Greece 12018 T 139 139
176 Greece 12019 G 139 139
177 Greece 12020 C 139 139
178 Greece 12021 T 139 139
179 Greece 12022 T 139 139
180 Greece 12023 T 139 139
181 Greece 12024 C 139 139
182 Greece 12025 C 139 139
183 Greece 12026 A 139 139
184 Greece 12027 T 139 139
185 Greece 12028 G 139 139
186 Greece 12029 C 139 139
187 Greece 12030 A 139 139
188 Greece 12031 G 139 139
189 Greece 12032 G 139 139
190 Greece 12033 G 139 139
191 Greece 12034 T 139 139
192 Greece 12035 G 139 139
193 Greece 12036 C 139 139
194 Greece 12037 T 139 139
195 Greece 12038 G 139 139
196 Greece 12039 T 139 139
197 Greece 12040 A 139 139
198 Greece 12041 G 139 139
199 Greece 12042 A 139 139
200 Greece 12043 C 139 139
201 Greece 12044 A 139 139
202 Greece 12045 T 139 139
203 Greece 12046 A 139 139
204 Greece 12047 A 139 139
205 Greece 12048 A 139 139
206 Greece 12049 C 139 139
207 Greece 12050 A 139 139
208 Greece 12051 A 139 139
209 Greece 12052 G 139 139
210 Greece 12053 C 139 139
211 Greece 12054 T 139 139
212 Greece 12055 T 139 139
213 Greece 12056 T 139 139
214 Greece 12057 G 139 139
215 Greece 12058 T 139 139
216 Greece 12059 G 139 139
217 Greece 12060 A 139 139
218 Greece 12061 A 139 139
219 Greece 12062 G 139 139
220 Greece 12063 A 139 139
221 Greece 12064 A 139 139
222 Greece 12065 A 139 139
223 Greece 12066 T 139 139
224 Greece 12067 G 139 139
225 Greece 12068 C 139 139
226 Greece 12069 T 139 139
227 Greece 12070 G 139 139
228 Greece 12071 G 139 139
229 Greece 12072 A 139 139
230 Greece 12073 C T 139 138 Asp3936Asp
231 Greece 12074 A 139 139
232 Greece 12075 A 139 139
233 Greece 12076 C 139 139
234 Greece 12077 A 139 139
235 Greece 12078 G 139 139
236 Greece 12079 G 139 139
237 Greece 12080 G 139 139
238 Greece 12081 C 139 139
239 Greece 12082 A 139 139
240 Greece 12083 A 139 139
241 Greece 12084 C 139 139
242 Greece 12085 C T 139 135 Thr3940Thr
243 Greece 12086 T 139 139
244 Greece 12087 T 139 139
245 Greece 12088 A 139 139
246 Greece 12089 C 139 139
247 Greece 12090 A 139 139
248 Greece 12091 A 139 139