National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*                                              
-     249                                        
?                                              
A     15 1   1                             1    
C     9   1                                    
D     15 1   3     1                            
E     15           2                            
F     3                                        
G     3   1                               1    
H     3                                        
I     6                                        
K     18                       1                
L     45         2         6                    
M     12               1                        
N     9                       2       1        
P                                              
Q 2   18                           1            
R     6           1                            
S     30         1         1     1     1       1
T     12               1                 1      
V     27 1                 1               3    
W     3                                        
Y                                              

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Germany 11843 T 4472 4472
1 Germany 11844 C 4472 4472
2 Germany 11845 T 4472 4472
3 Germany 11846 A 4473 4473
4 Germany 11847 A 4473 4473
5 Germany 11848 A 4473 4473
6 Germany 11849 A 4473 4473
7 Germany 11850 T 4473 4473
8 Germany 11851 G T 4474 4449 Met3862Ile
9 Germany 11852 T 4474 4473
10 Germany 11853 C 4474 4472
11 Germany 11854 A 4474 4473
12 Germany 11855 G 4474 4474
13 Germany 11856 A 4474 4474
14 Germany 11857 T 4474 4474
15 Germany 11858 G 4474 4474
16 Germany 11859 T 4474 4474
17 Germany 11860 A 4474 4474
18 Germany 11861 A 4474 4474
19 Germany 11862 A 4474 4474
20 Germany 11863 G 4474 4474
21 Germany 11864 T 4474 4474
22 Germany 11865 G 4474 4474
23 Germany 11866 C T 4474 4470 Cys3867Cys
24 Germany 11867 A 4475 4474
25 Germany 11868 C 4478 4477
26 Germany 11869 A G 4478 4476 Thr3868Thr
27 Germany 11870 T 4482 4482
28 Germany 11871 C 4482 4482
29 Germany 11872 A 4482 4482
30 Germany 11873 G 4482 4482
31 Germany 11874 T 4482 4482
32 Germany 11875 A 4482 4481
33 Germany 11876 G 4482 4481
34 Germany 11877 T 4483 4482
35 Germany 11878 C T 4483 4481 Val3871Val
36 Germany 11879 T 4483 4482
37 Germany 11880 T 4483 4482
38 Germany 11881 A 4484 4483
39 Germany 11882 C 4484 4483
40 Germany 11883 T 4484 4483
41 Germany 11884 C T 4484 4480 Leu3873Leu
42 Germany 11885 T 4484 4483
43 Germany 11886 C 4484 4483
44 Germany 11887 A 4484 4483
45 Germany 11888 G 4484 4482
46 Germany 11889 T 4484 4482
47 Germany 11890 T 4486 4484
48 Germany 11891 T 4486 4484
49 Germany 11892 T 4486 4484
50 Germany 11893 G 4486 4484
51 Germany 11894 C T 4486 4484 Gln3877*
52 Germany 11895 A 4486 4484
53 Germany 11896 A 4486 4485
54 Germany 11897 C 4486 4485
55 Germany 11898 A 4486 4485
56 Germany 11899 A 4486 4485
57 Germany 11900 C 4486 4485
58 Germany 11901 T 4486 4485
59 Germany 11902 C 4486 4484
60 Germany 11903 A G 4486 4483 Arg3880Gly
61 Germany 11904 G 4487 4487
62 Germany 11905 A 4487 4487
63 Germany 11906 G T 4487 4485 Val3881Leu
64 Germany 11907 T 4487 4487
65 Germany 11908 A G 4487 4486 Val3881Val
66 Germany 11909 G 4487 4487
67 Germany 11910 A 4487 4487
68 Germany 11911 A 4487 4487
69 Germany 11912 T 4487 4487
70 Germany 11913 C 4487 4487
71 Germany 11914 A 4487 4487
72 Germany 11915 T 4487 4487
73 Germany 11916 C T 4487 4483 Ser3884Leu
74 Germany 11917 A 4487 4487
75 Germany 11918 T C 4487 4486 Ser3885Pro
76 Germany 11919 C T 4487 4482 Ser3885Phe
77 Germany 11920 T 4487 4487
78 Germany 11921 A 4487 4487
79 Germany 11922 A 4487 4487
80 Germany 11923 A 4487 4487
81 Germany 11924 T 4487 4487
82 Germany 11925 T 4487 4487
83 Germany 11926 G 4487 4487
84 Germany 11927 T 4487 4487
85 Germany 11928 G 4487 4487
86 Germany 11929 G 4486 4486
87 Germany 11930 G 4486 4485
88 Germany 11931 C A 4486 4484 Ala3889Asp
89 Germany 11932 T 4485 4484
90 Germany 11933 C 4485 4484
91 Germany 11934 A 4485 4484
92 Germany 11935 A 4485 4484
93 Germany 11936 T 4485 4484
94 Germany 11937 G 4485 4483
95 Germany 11938 T 4485 4483
96 Germany 11939 G 4485 4483
97 Germany 11940 T 4485 4483
98 Germany 11941 C T 4485 4477 Val3892Val
99 Germany 11942 C 4484 4483
100 Germany 11943 A 4479 4478
101 Germany 11944 G 4479 4478
102 Germany 11945 T 4477 4476
103 Germany 11946 T 4477 4476
104 Germany 11947 A 4477 4476
105 Germany 11948 C 4477 4476
106 Germany 11949 A 4477 4476
107 Germany 11950 C 4477 4476
108 Germany 11951 A 4477 4476
109 Germany 11952 A 4477 4476
110 Germany 11953 T 4478 4477
111 Germany 11954 G 4478 4477
112 Germany 11955 A 4478 4477
113 Germany 11956 C T 4478 4476 Asp3897Asp
114 Germany 11957 A 4478 4477
115 Germany 11958 T 4478 4477
116 Germany 11959 T 4478 4477
117 Germany 11960 C 4478 4477
118 Germany 11961 T 4478 4477
119 Germany 11962 C T 4478 4474 Leu3899Leu
120 Germany 11963 T 4478 4477
121 Germany 11964 T 4478 4478
122 Germany 11965 A 4478 4478
123 Germany 11966 G 4478 4478
124 Germany 11967 C 4478 4478
125 Germany 11968 T 4478 4478
126 Germany 11969 A 4478 4478
127 Germany 11970 A 4478 4478
128 Germany 11971 A 4478 4478
129 Germany 11972 G 4478 4478
130 Germany 11973 A G 4478 4477 Asp3903Gly
131 Germany 11974 T C 4478 4474 Asp3903Asp
132 Germany 11975 A 4478 4478
133 Germany 11976 C T 4478 4477 Thr3904Ile
134 Germany 11977 T 4478 4478
135 Germany 11978 A 4478 4478
136 Germany 11979 C 4478 4478
137 Germany 11980 T 4478 4478
138 Germany 11981 G 4478 4478
139 Germany 11982 A G 4478 4477 Glu3906Gly
140 Germany 11983 A 4478 4478
141 Germany 11984 G 4478 4478
142 Germany 11985 C 4478 4478
143 Germany 11986 C 4478 4478
144 Germany 11987 T 4478 4478
145 Germany 11988 T 4478 4478
146 Germany 11989 T 4478 4478
147 Germany 11990 G 4478 4478
148 Germany 11991 A G 4478 4476 Glu3909Gly
149 Germany 11992 A 4478 4478
150 Germany 11993 A 4478 4478
151 Germany 11994 A 4478 4478
152 Germany 11995 A 4483 4483
153 Germany 11996 A 4483 4483
154 Germany 11997 T 4483 4483
155 Germany 11998 G 4483 4483
156 Germany 11999 G 4483 4483
157 Germany 12000 T 4481 4481
158 Germany 12001 T 4481 4481
159 Germany 12002 T 4481 4481
160 Germany 12003 C 4481 4481
161 Germany 12004 A 4481 4481
162 Germany 12005 C T 4481 4476 Leu3914Leu
163 Germany 12006 T 4481 4481
164 Germany 12007 A 4481 4481
165 Germany 12008 C T 4481 4477 Leu3915Phe
166 Germany 12009 T 4481 4481
167 Germany 12010 T 4481 4481
168 Germany 12011 T 4481 4481
169 Germany 12012 C A 4481 4480 Ser3916Tyr
170 Germany 12013 T 4481 4481
171 Germany 12014 G 4481 4481
172 Germany 12015 T C 4481 4479 Val3917Ala
173 Germany 12016 T 4481 4481
174 Germany 12017 T 4481 4481
175 Germany 12018 T 4481 4481
176 Germany 12019 G 4481 4481
177 Germany 12020 C 4481 4481
178 Germany 12021 T 4481 4481
179 Germany 12022 T 4481 4481
180 Germany 12023 T 4481 4481
181 Germany 12024 C 4481 4481
182 Germany 12025 C T 4481 4479 Ser3920Ser
183 Germany 12026 A 4481 4481
184 Germany 12027 T 4481 4481
185 Germany 12028 G 4481 4480
186 Germany 12029 C T 4481 4479 Gln3922*
187 Germany 12030 A 4481 4480
188 Germany 12031 G A 4481 4479 Gln3922Gln
189 Germany 12032 G T 4481 4479 Gly3923Cys
190 Germany 12033 G T 4481 4479 Gly3923Val
191 Germany 12034 T 4481 4480
192 Germany 12035 G 4481 4480
193 Germany 12036 C 4481 4480
194 Germany 12037 T C 4481 4479 Ala3924Ala
195 Germany 12038 G 4481 4480
196 Germany 12039 T 4481 4480
197 Germany 12040 A 4481 4480
198 Germany 12041 G 4481 4480
199 Germany 12042 A 4481 4481
200 Germany 12043 C T 4480 4475 Asp3926Asp
201 Germany 12044 A 4480 4480
202 Germany 12045 T 4480 4480
203 Germany 12046 A 4480 4480
204 Germany 12047 A 4480 4480
205 Germany 12048 A 4480 4480
206 Germany 12049 C T 4480 4479 Asn3928Asn
207 Germany 12050 A 4480 4480
208 Germany 12051 A 4480 4480
209 Germany 12052 G T 4480 4477 Lys3929Asn
210 Germany 12053 C T 4480 4476 Leu3930Phe
211 Germany 12054 T 4480 4480
212 Germany 12055 T 4480 4480
213 Germany 12056 T 4480 4480
214 Germany 12057 G 4480 4479
215 Germany 12058 T 4480 4479
216 Germany 12059 G 4480 4480
217 Germany 12060 A 4480 4480
218 Germany 12061 A 4480 4480
219 Germany 12062 G 4480 4480
220 Germany 12063 A 4480 4480
221 Germany 12064 A 4480 4480
222 Germany 12065 A 4480 4480
223 Germany 12066 T 4480 4480
224 Germany 12067 G 4480 4480
225 Germany 12068 C T 4480 4476 Leu3935Leu
226 Germany 12069 T 4480 4480
227 Germany 12070 G T 4480 4473 Leu3935Leu
228 Germany 12071 G 4480 4480
229 Germany 12072 A C 4480 4479 Asp3936Ala
230 Germany 12073 C 4480 4480
231 Germany 12074 A 4480 4480
232 Germany 12075 A G 4480 4479 Asn3937Ser
233 Germany 12076 C T 4480 4475 Asn3937Asn
234 Germany 12077 A 4480 4480
235 Germany 12078 G 4480 4480
236 Germany 12079 G 4480 4480
237 Germany 12080 G 4480 4480
238 Germany 12081 C T 4480 4479 Ala3939Val
239 Germany 12082 A 4480 4480
240 Germany 12083 A 4480 4480
241 Germany 12084 C 4480 4480
242 Germany 12085 C 4480 4480
243 Germany 12086 T C 4480 4478 Leu3941Leu
244 Germany 12087 T 4480 4480
245 Germany 12088 A 4480 4480
246 Germany 12089 C 4480 4480
247 Germany 12090 A 4478 4478
248 Germany 12091 A 4478 4478