National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Georgia 11843 T 26 25
1 Georgia 11844 C 26 25
2 Georgia 11845 T 26 25
3 Georgia 11846 A 26 25
4 Georgia 11847 A 26 25
5 Georgia 11848 A 26 25
6 Georgia 11849 A 26 25
7 Georgia 11850 T 26 25
8 Georgia 11851 G 26 25
9 Georgia 11852 T 26 25
10 Georgia 11853 C 26 25
11 Georgia 11854 A 26 25
12 Georgia 11855 G 26 25
13 Georgia 11856 A 26 25
14 Georgia 11857 T 26 25
15 Georgia 11858 G 26 25
16 Georgia 11859 T 26 25
17 Georgia 11860 A 26 25
18 Georgia 11861 A 26 25
19 Georgia 11862 A 26 25
20 Georgia 11863 G 26 25
21 Georgia 11864 T 26 25
22 Georgia 11865 G 26 25
23 Georgia 11866 C 26 25
24 Georgia 11867 A 26 25
25 Georgia 11868 C 26 25
26 Georgia 11869 A 26 25
27 Georgia 11870 T 26 25
28 Georgia 11871 C 26 25
29 Georgia 11872 A 26 25
30 Georgia 11873 G 26 25
31 Georgia 11874 T 26 25
32 Georgia 11875 A 26 25
33 Georgia 11876 G 26 25
34 Georgia 11877 T 26 25
35 Georgia 11878 C 26 25
36 Georgia 11879 T 26 25
37 Georgia 11880 T 26 25
38 Georgia 11881 A 26 25
39 Georgia 11882 C 26 25
40 Georgia 11883 T 26 25
41 Georgia 11884 C 26 25
42 Georgia 11885 T 26 25
43 Georgia 11886 C 26 25
44 Georgia 11887 A 26 25
45 Georgia 11888 G 26 25
46 Georgia 11889 T 26 25
47 Georgia 11890 T 26 25
48 Georgia 11891 T 26 25
49 Georgia 11892 T 26 25
50 Georgia 11893 G 26 25
51 Georgia 11894 C 26 25
52 Georgia 11895 A 26 25
53 Georgia 11896 A 26 25
54 Georgia 11897 C 26 25
55 Georgia 11898 A 26 25
56 Georgia 11899 A 26 25
57 Georgia 11900 C 26 25
58 Georgia 11901 T 26 25
59 Georgia 11902 C 26 25
60 Georgia 11903 A 26 25
61 Georgia 11904 G 26 25
62 Georgia 11905 A 26 25
63 Georgia 11906 G 26 25
64 Georgia 11907 T 26 25
65 Georgia 11908 A 26 25
66 Georgia 11909 G 26 25
67 Georgia 11910 A 26 25
68 Georgia 11911 A 26 25
69 Georgia 11912 T 26 25
70 Georgia 11913 C 26 25
71 Georgia 11914 A 26 25
72 Georgia 11915 T 26 25
73 Georgia 11916 C 26 25
74 Georgia 11917 A 26 25
75 Georgia 11918 T 26 25
76 Georgia 11919 C 26 25
77 Georgia 11920 T 26 25
78 Georgia 11921 A 26 25
79 Georgia 11922 A 26 25
80 Georgia 11923 A 26 25
81 Georgia 11924 T 26 25
82 Georgia 11925 T 26 25
83 Georgia 11926 G 26 25
84 Georgia 11927 T 26 25
85 Georgia 11928 G 26 25
86 Georgia 11929 G 26 25
87 Georgia 11930 G 26 25
88 Georgia 11931 C 26 25
89 Georgia 11932 T 26 25
90 Georgia 11933 C 26 25
91 Georgia 11934 A 26 25
92 Georgia 11935 A 26 25
93 Georgia 11936 T 26 25
94 Georgia 11937 G 26 25
95 Georgia 11938 T 26 25
96 Georgia 11939 G 26 25
97 Georgia 11940 T 26 25
98 Georgia 11941 C 26 25
99 Georgia 11942 C 26 25
100 Georgia 11943 A 26 25
101 Georgia 11944 G 26 25
102 Georgia 11945 T 26 25
103 Georgia 11946 T 26 25
104 Georgia 11947 A 26 25
105 Georgia 11948 C 26 25
106 Georgia 11949 A 26 25
107 Georgia 11950 C 26 25
108 Georgia 11951 A 26 25
109 Georgia 11952 A 26 25
110 Georgia 11953 T 26 25
111 Georgia 11954 G 26 25
112 Georgia 11955 A 26 25
113 Georgia 11956 C 26 25
114 Georgia 11957 A 26 25
115 Georgia 11958 T 26 25
116 Georgia 11959 T 26 25
117 Georgia 11960 C 26 25
118 Georgia 11961 T 26 25
119 Georgia 11962 C 26 25
120 Georgia 11963 T 26 25
121 Georgia 11964 T 26 25
122 Georgia 11965 A 26 25
123 Georgia 11966 G 26 25
124 Georgia 11967 C 26 25
125 Georgia 11968 T 26 25
126 Georgia 11969 A 26 25
127 Georgia 11970 A 26 25
128 Georgia 11971 A 26 25
129 Georgia 11972 G 26 25
130 Georgia 11973 A 26 25
131 Georgia 11974 T 26 25
132 Georgia 11975 A 26 25
133 Georgia 11976 C 26 25
134 Georgia 11977 T 26 25
135 Georgia 11978 A 26 25
136 Georgia 11979 C 26 25
137 Georgia 11980 T 26 25
138 Georgia 11981 G 26 25
139 Georgia 11982 A 26 25
140 Georgia 11983 A 26 25
141 Georgia 11984 G 26 25
142 Georgia 11985 C 26 25
143 Georgia 11986 C 26 25
144 Georgia 11987 T 26 25
145 Georgia 11988 T 26 25
146 Georgia 11989 T 26 25
147 Georgia 11990 G 26 25
148 Georgia 11991 A 26 25
149 Georgia 11992 A 26 25
150 Georgia 11993 A 26 25
151 Georgia 11994 A 26 25
152 Georgia 11995 A 26 25
153 Georgia 11996 A 26 25
154 Georgia 11997 T 26 25
155 Georgia 11998 G 26 25
156 Georgia 11999 G 26 25
157 Georgia 12000 T 26 25
158 Georgia 12001 T 26 25
159 Georgia 12002 T 26 25
160 Georgia 12003 C 26 25
161 Georgia 12004 A 26 25
162 Georgia 12005 C 26 25
163 Georgia 12006 T 26 25
164 Georgia 12007 A 26 25
165 Georgia 12008 C 26 25
166 Georgia 12009 T 26 25
167 Georgia 12010 T 26 25
168 Georgia 12011 T 26 25
169 Georgia 12012 C 26 25
170 Georgia 12013 T 26 25
171 Georgia 12014 G 26 25
172 Georgia 12015 T 26 25
173 Georgia 12016 T 26 25
174 Georgia 12017 T 26 25
175 Georgia 12018 T 26 25
176 Georgia 12019 G 26 25
177 Georgia 12020 C 26 25
178 Georgia 12021 T 26 25
179 Georgia 12022 T 26 25
180 Georgia 12023 T 26 25
181 Georgia 12024 C 26 25
182 Georgia 12025 C 26 25
183 Georgia 12026 A 26 25
184 Georgia 12027 T 26 25
185 Georgia 12028 G 26 25
186 Georgia 12029 C 26 25
187 Georgia 12030 A 26 25
188 Georgia 12031 G 26 25
189 Georgia 12032 G 26 25
190 Georgia 12033 G 26 25
191 Georgia 12034 T 26 25
192 Georgia 12035 G 26 25
193 Georgia 12036 C 26 25
194 Georgia 12037 T 26 25
195 Georgia 12038 G 26 25
196 Georgia 12039 T 26 25
197 Georgia 12040 A 26 25
198 Georgia 12041 G 26 25
199 Georgia 12042 A 26 25
200 Georgia 12043 C 26 25
201 Georgia 12044 A 26 25
202 Georgia 12045 T 26 25
203 Georgia 12046 A 26 25
204 Georgia 12047 A 26 25
205 Georgia 12048 A 26 25
206 Georgia 12049 C 26 25
207 Georgia 12050 A 26 25
208 Georgia 12051 A 26 25
209 Georgia 12052 G 26 25
210 Georgia 12053 C 26 25
211 Georgia 12054 T 26 25
212 Georgia 12055 T 26 25
213 Georgia 12056 T 26 25
214 Georgia 12057 G 26 25
215 Georgia 12058 T 26 25
216 Georgia 12059 G 26 25
217 Georgia 12060 A 26 25
218 Georgia 12061 A 26 25
219 Georgia 12062 G 26 25
220 Georgia 12063 A 26 25
221 Georgia 12064 A 26 25
222 Georgia 12065 A 26 25
223 Georgia 12066 T 26 25
224 Georgia 12067 G 26 25
225 Georgia 12068 C 26 25
226 Georgia 12069 T 26 25
227 Georgia 12070 G 26 25
228 Georgia 12071 G 26 25
229 Georgia 12072 A 26 25
230 Georgia 12073 C 26 25
231 Georgia 12074 A 26 25
232 Georgia 12075 A 26 25
233 Georgia 12076 C 26 25
234 Georgia 12077 A 26 25
235 Georgia 12078 G 26 25
236 Georgia 12079 G 26 25
237 Georgia 12080 G 26 25
238 Georgia 12081 C 26 25
239 Georgia 12082 A 26 25
240 Georgia 12083 A 26 25
241 Georgia 12084 C 26 25
242 Georgia 12085 C 26 25
243 Georgia 12086 T 26 25
244 Georgia 12087 T 26 25
245 Georgia 12088 A 26 25
246 Georgia 12089 C 26 25
247 Georgia 12090 A 26 25
248 Georgia 12091 A 26 25