National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Gabon 11843 T 4 4
1 Gabon 11844 C 4 4
2 Gabon 11845 T 4 4
3 Gabon 11846 A 4 4
4 Gabon 11847 A 4 4
5 Gabon 11848 A 4 4
6 Gabon 11849 A 4 4
7 Gabon 11850 T 4 4
8 Gabon 11851 G 4 4
9 Gabon 11852 T 4 4
10 Gabon 11853 C 4 4
11 Gabon 11854 A 4 4
12 Gabon 11855 G 4 4
13 Gabon 11856 A 4 4
14 Gabon 11857 T 4 4
15 Gabon 11858 G 4 4
16 Gabon 11859 T 4 4
17 Gabon 11860 A 4 4
18 Gabon 11861 A 4 4
19 Gabon 11862 A 4 4
20 Gabon 11863 G 4 4
21 Gabon 11864 T 4 4
22 Gabon 11865 G 4 4
23 Gabon 11866 C 4 4
24 Gabon 11867 A 4 4
25 Gabon 11868 C 4 4
26 Gabon 11869 A 4 4
27 Gabon 11870 T 4 4
28 Gabon 11871 C 4 4
29 Gabon 11872 A 4 4
30 Gabon 11873 G 4 4
31 Gabon 11874 T 4 4
32 Gabon 11875 A 4 4
33 Gabon 11876 G 4 4
34 Gabon 11877 T 4 4
35 Gabon 11878 C 4 4
36 Gabon 11879 T 4 4
37 Gabon 11880 T 4 4
38 Gabon 11881 A 4 4
39 Gabon 11882 C 4 4
40 Gabon 11883 T 4 4
41 Gabon 11884 C 4 4
42 Gabon 11885 T 4 4
43 Gabon 11886 C 4 4
44 Gabon 11887 A 4 4
45 Gabon 11888 G 4 4
46 Gabon 11889 T 4 4
47 Gabon 11890 T 4 4
48 Gabon 11891 T 4 4
49 Gabon 11892 T 4 4
50 Gabon 11893 G 4 4
51 Gabon 11894 C 4 4
52 Gabon 11895 A 4 4
53 Gabon 11896 A 4 4
54 Gabon 11897 C 4 4
55 Gabon 11898 A 4 4
56 Gabon 11899 A 4 4
57 Gabon 11900 C 4 4
58 Gabon 11901 T 4 4
59 Gabon 11902 C 4 4
60 Gabon 11903 A 4 4
61 Gabon 11904 G 4 4
62 Gabon 11905 A 4 4
63 Gabon 11906 G 4 4
64 Gabon 11907 T 4 4
65 Gabon 11908 A 4 4
66 Gabon 11909 G 4 4
67 Gabon 11910 A 4 4
68 Gabon 11911 A 4 4
69 Gabon 11912 T 4 4
70 Gabon 11913 C 4 4
71 Gabon 11914 A 4 4
72 Gabon 11915 T 4 4
73 Gabon 11916 C 4 4
74 Gabon 11917 A 4 4
75 Gabon 11918 T 4 4
76 Gabon 11919 C 4 4
77 Gabon 11920 T 4 4
78 Gabon 11921 A 4 4
79 Gabon 11922 A 4 4
80 Gabon 11923 A 4 4
81 Gabon 11924 T 4 4
82 Gabon 11925 T 4 4
83 Gabon 11926 G 4 4
84 Gabon 11927 T 4 4
85 Gabon 11928 G 4 4
86 Gabon 11929 G 4 4
87 Gabon 11930 G 4 4
88 Gabon 11931 C 4 4
89 Gabon 11932 T 4 4
90 Gabon 11933 C 4 4
91 Gabon 11934 A 4 4
92 Gabon 11935 A 4 4
93 Gabon 11936 T 4 4
94 Gabon 11937 G 4 4
95 Gabon 11938 T 4 4
96 Gabon 11939 G 4 4
97 Gabon 11940 T 4 4
98 Gabon 11941 C 4 4
99 Gabon 11942 C 4 4
100 Gabon 11943 A 4 4
101 Gabon 11944 G 4 4
102 Gabon 11945 T 4 4
103 Gabon 11946 T 4 4
104 Gabon 11947 A 4 4
105 Gabon 11948 C 4 4
106 Gabon 11949 A 4 4
107 Gabon 11950 C 4 4
108 Gabon 11951 A 4 4
109 Gabon 11952 A 4 4
110 Gabon 11953 T 4 4
111 Gabon 11954 G 4 4
112 Gabon 11955 A 4 4
113 Gabon 11956 C 4 4
114 Gabon 11957 A 4 4
115 Gabon 11958 T 4 4
116 Gabon 11959 T 4 4
117 Gabon 11960 C 4 4
118 Gabon 11961 T 4 4
119 Gabon 11962 C 4 4
120 Gabon 11963 T 4 4
121 Gabon 11964 T 4 4
122 Gabon 11965 A 4 4
123 Gabon 11966 G 4 4
124 Gabon 11967 C 4 4
125 Gabon 11968 T 4 4
126 Gabon 11969 A 4 4
127 Gabon 11970 A 4 4
128 Gabon 11971 A 4 4
129 Gabon 11972 G 4 4
130 Gabon 11973 A 4 4
131 Gabon 11974 T 4 4
132 Gabon 11975 A 4 4
133 Gabon 11976 C 4 4
134 Gabon 11977 T 4 4
135 Gabon 11978 A 4 4
136 Gabon 11979 C 4 4
137 Gabon 11980 T 4 4
138 Gabon 11981 G 4 4
139 Gabon 11982 A 4 4
140 Gabon 11983 A 4 4
141 Gabon 11984 G 4 4
142 Gabon 11985 C 4 4
143 Gabon 11986 C 4 4
144 Gabon 11987 T 4 4
145 Gabon 11988 T 4 4
146 Gabon 11989 T 4 4
147 Gabon 11990 G 4 4
148 Gabon 11991 A 4 4
149 Gabon 11992 A 4 4
150 Gabon 11993 A 4 4
151 Gabon 11994 A 4 4
152 Gabon 11995 A 4 4
153 Gabon 11996 A 4 4
154 Gabon 11997 T 4 4
155 Gabon 11998 G 4 4
156 Gabon 11999 G 4 4
157 Gabon 12000 T 4 4
158 Gabon 12001 T 4 4
159 Gabon 12002 T 4 4
160 Gabon 12003 C 4 4
161 Gabon 12004 A 4 4
162 Gabon 12005 C 4 4
163 Gabon 12006 T 4 4
164 Gabon 12007 A 4 4
165 Gabon 12008 C 4 4
166 Gabon 12009 T 4 4
167 Gabon 12010 T 4 4
168 Gabon 12011 T 4 4
169 Gabon 12012 C 4 4
170 Gabon 12013 T 4 4
171 Gabon 12014 G 4 4
172 Gabon 12015 T 4 4
173 Gabon 12016 T 4 4
174 Gabon 12017 T 4 4
175 Gabon 12018 T 4 4
176 Gabon 12019 G 4 4
177 Gabon 12020 C 4 4
178 Gabon 12021 T 4 4
179 Gabon 12022 T 4 4
180 Gabon 12023 T 4 4
181 Gabon 12024 C 4 4
182 Gabon 12025 C 4 4
183 Gabon 12026 A 4 4
184 Gabon 12027 T 4 4
185 Gabon 12028 G 4 4
186 Gabon 12029 C 4 4
187 Gabon 12030 A 4 4
188 Gabon 12031 G 4 4
189 Gabon 12032 G 4 4
190 Gabon 12033 G 4 4
191 Gabon 12034 T 4 4
192 Gabon 12035 G 4 4
193 Gabon 12036 C 4 4
194 Gabon 12037 T 4 4
195 Gabon 12038 G 4 4
196 Gabon 12039 T 4 4
197 Gabon 12040 A 4 4
198 Gabon 12041 G 4 4
199 Gabon 12042 A 4 4
200 Gabon 12043 C 4 4
201 Gabon 12044 A 4 4
202 Gabon 12045 T 4 4
203 Gabon 12046 A 4 4
204 Gabon 12047 A 4 4
205 Gabon 12048 A 4 4
206 Gabon 12049 C 4 4
207 Gabon 12050 A 4 4
208 Gabon 12051 A 4 4
209 Gabon 12052 G 4 4
210 Gabon 12053 C 4 4
211 Gabon 12054 T 4 4
212 Gabon 12055 T 4 4
213 Gabon 12056 T 4 4
214 Gabon 12057 G 4 4
215 Gabon 12058 T 4 4
216 Gabon 12059 G 4 4
217 Gabon 12060 A 4 4
218 Gabon 12061 A 4 4
219 Gabon 12062 G 4 4
220 Gabon 12063 A 4 4
221 Gabon 12064 A 4 4
222 Gabon 12065 A 4 4
223 Gabon 12066 T 4 4
224 Gabon 12067 G 4 4
225 Gabon 12068 C 4 4
226 Gabon 12069 T 4 4
227 Gabon 12070 G 4 4
228 Gabon 12071 G 4 4
229 Gabon 12072 A 4 4
230 Gabon 12073 C 4 4
231 Gabon 12074 A 4 4
232 Gabon 12075 A 4 4
233 Gabon 12076 C 4 4
234 Gabon 12077 A 4 4
235 Gabon 12078 G 4 4
236 Gabon 12079 G 4 4
237 Gabon 12080 G 4 4
238 Gabon 12081 C 4 4
239 Gabon 12082 A 4 4
240 Gabon 12083 A 4 4
241 Gabon 12084 C 4 4
242 Gabon 12085 C 4 4
243 Gabon 12086 T 4 4
244 Gabon 12087 T 4 4
245 Gabon 12088 A 4 4
246 Gabon 12089 C 4 4
247 Gabon 12090 A 4 4
248 Gabon 12091 A 4 4