National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15 1                             1 1  
C   9   1                                
D   15     3                              
E   15                                    
F   3                                    
G   3                           1        
H   3                                    
I   6                                    
K   18                                    
L   45         2         7                
M   12               5                    
N   9                       2            
Q   18             1                      
R   6                     1       1      
S   30         1         1         1      
T   12               2               1    
V   27         1     2                 2  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 France 11843 T 4196 4196
1 France 11844 C 4196 4196
2 France 11845 T 4196 4196
3 France 11846 A 4196 4196
4 France 11847 A 4196 4196
5 France 11848 A 4196 4196
6 France 11849 A 4196 4196
7 France 11850 T 4197 4197
8 France 11851 G T,A 4197 4023 Met3862Ile-p.Met3862Ile
9 France 11852 T 4197 4196
10 France 11853 C 4197 4193
11 France 11854 A 4197 4196
12 France 11855 G 4199 4199
13 France 11856 A 4199 4199
14 France 11857 T 4199 4199
15 France 11858 G A 4200 4199 Val3865Ile
16 France 11859 T 4200 4199
17 France 11860 A 4201 4201
18 France 11861 A 4201 4201
19 France 11862 A 4201 4201
20 France 11863 G 4202 4202
21 France 11864 T 4202 4202
22 France 11865 G 4202 4202
23 France 11866 C T 4202 4201 Cys3867Cys
24 France 11867 A 4202 4201
25 France 11868 C T 4205 4203 Thr3868Ile
26 France 11869 A 4205 4205
27 France 11870 T 4210 4209
28 France 11871 C 4210 4210
29 France 11872 A 4210 4210
30 France 11873 G 4210 4210
31 France 11874 T 4210 4210
32 France 11875 A 4210 4209
33 France 11876 G 4213 4213
34 France 11877 T 4212 4211
35 France 11878 C T 4212 4209 Val3871Val
36 France 11879 T 4208 4206
37 France 11880 T 4209 4208
38 France 11881 A 4209 4207
39 France 11882 C 4209 4207
40 France 11883 T 4209 4207
41 France 11884 C T 4210 4207 Leu3873Leu
42 France 11885 T 4208 4202
43 France 11886 C 4208 4200
44 France 11887 A 4208 4202
45 France 11888 G 4209 4203
46 France 11889 T 4209 4203
47 France 11890 T 4209 4201
48 France 11891 T 4209 4202
49 France 11892 T 4209 4202
50 France 11893 G 4209 4202
51 France 11894 C 4210 4203
52 France 11895 A 4210 4202
53 France 11896 A 4210 4201
54 France 11897 C 4210 4199
55 France 11898 A 4210 4200
56 France 11899 A 4212 4203
57 France 11900 C 4212 4204
58 France 11901 T 4212 4202
59 France 11902 C T 4212 4200 Leu3879Leu
60 France 11903 A 4212 4203
61 France 11904 G 4219 4213
62 France 11905 A 4219 4213
63 France 11906 G 4220 4216
64 France 11907 T 4220 4214
65 France 11908 A 4218 4214
66 France 11909 G 4218 4212
67 France 11910 A 4218 4213
68 France 11911 A 4218 4212
69 France 11912 T 4218 4213
70 France 11913 C 4216 4206
71 France 11914 A 4216 4208
72 France 11915 T 4216 4206
73 France 11916 C T 4220 4206 Ser3884Leu
74 France 11917 A 4220 4211
75 France 11918 T 4225 4220
76 France 11919 C T 4226 4220 Ser3885Phe
77 France 11920 T 4226 4221
78 France 11921 A 4226 4220
79 France 11922 A 4226 4221
80 France 11923 A 4227 4222
81 France 11924 T 4227 4222
82 France 11925 T 4226 4216
83 France 11926 G 4226 4217
84 France 11927 T 4225 4216
85 France 11928 G 4225 4216
86 France 11929 G 4228 4219
87 France 11930 G 4228 4219
88 France 11931 C 4228 4219
89 France 11932 T 4228 4220
90 France 11933 C 4229 4221
91 France 11934 A 4230 4221
92 France 11935 A C 4230 4206 Gln3890His
93 France 11936 T 4230 4222
94 France 11937 G 4231 4223
95 France 11938 T 4230 4220
96 France 11939 G 4231 4223
97 France 11940 T 4231 4225
98 France 11941 C T 4231 4223 Val3892Val
99 France 11942 C 4232 4224
100 France 11943 A 4231 4223
101 France 11944 G 4232 4226
102 France 11945 T 4232 4226
103 France 11946 T 4231 4223
104 France 11947 A 4233 4226
105 France 11948 C 4233 4226
106 France 11949 A 4234 4227
107 France 11950 C 4235 4228
108 France 11951 A 4230 4220
109 France 11952 A 4231 4222
110 France 11953 T 4230 4219
111 France 11954 G 4231 4222
112 France 11955 A 4232 4223
113 France 11956 C T 4231 4216 Asp3897Asp
114 France 11957 A 4231 4222
115 France 11958 T 4231 4221
116 France 11959 T 4232 4224
117 France 11960 C 4233 4226
118 France 11961 T 4233 4226
119 France 11962 C T,G 4233 4223 Leu3899Leu-p.Leu3899Leu
120 France 11963 T 4232 4224
121 France 11964 T 4232 4224
122 France 11965 A 4232 4225
123 France 11966 G 4234 4228
124 France 11967 C 4234 4226
125 France 11968 T 4234 4228
126 France 11969 A 4229 4223
127 France 11970 A 4229 4222
128 France 11971 A 4231 4226
129 France 11972 G 4233 4229
130 France 11973 A 4233 4231
131 France 11974 T C 4233 4230 Asp3903Asp
132 France 11975 A 4232 4225
133 France 11976 C 4236 4232
134 France 11977 T 4236 4233
135 France 11978 A 4234 4231
136 France 11979 C 4234 4232
137 France 11980 T 4228 4224
138 France 11981 G 4228 4225
139 France 11982 A 4228 4223
140 France 11983 A 4228 4223
141 France 11984 G 4228 4224
142 France 11985 C 4227 4223
143 France 11986 C 4227 4222
144 France 11987 T 4227 4221
145 France 11988 T 4227 4221
146 France 11989 T 4227 4221
147 France 11990 G 4227 4222
148 France 11991 A 4228 4222
149 France 11992 A 4228 4222
150 France 11993 A 4228 4222
151 France 11994 A 4229 4224
152 France 11995 A 4229 4222
153 France 11996 A 4229 4224
154 France 11997 T 4229 4221
155 France 11998 G T 4229 4224 Met3911Ile
156 France 11999 G 4229 4224
157 France 12000 T 4229 4223
158 France 12001 T 4229 4225
159 France 12002 T 4229 4223
160 France 12003 C 4229 4225
161 France 12004 A 4229 4225
162 France 12005 C T 4229 4222 Leu3914Leu
163 France 12006 T 4229 4226
164 France 12007 A 4230 4226
165 France 12008 C T 4230 4226 Leu3915Phe
166 France 12009 T 4229 4225
167 France 12010 T 4229 4226
168 France 12011 T 4229 4225
169 France 12012 C 4228 4224
170 France 12013 T 4228 4224
171 France 12014 G T 4228 4219 Val3917Phe
172 France 12015 T 4227 4223
173 France 12016 T 4226 4222
174 France 12017 T 4226 4222
175 France 12018 T 4226 4221
176 France 12019 G 4226 4221
177 France 12020 C T 4226 4219 Leu3919Phe
178 France 12021 T 4226 4220
179 France 12022 T 4226 4221
180 France 12023 T 4224 4218
181 France 12024 C 4224 4220
182 France 12025 C T 4224 4204 Ser3920Ser
183 France 12026 A 4224 4223
184 France 12027 T 4224 4222
185 France 12028 G T 4223 4219 Met3921Ile
186 France 12029 C 4223 4221
187 France 12030 A 4222 4219
188 France 12031 G 4220 4217
189 France 12032 G C 4219 4215 Gly3923Arg
190 France 12033 G 4220 4219
191 France 12034 T 4219 4215
192 France 12035 G 4218 4216
193 France 12036 C 4218 4218
194 France 12037 T 4217 4217
195 France 12038 G A 4217 4214 Val3925Ile
196 France 12039 T 4217 4217
197 France 12040 A 4217 4217
198 France 12041 G 4218 4216
199 France 12042 A 4213 4212
200 France 12043 C 4213 4213
201 France 12044 A 4211 4210
202 France 12045 T 4209 4207
203 France 12046 A 4208 4207
204 France 12047 A 4208 4207
205 France 12048 A 4208 4207
206 France 12049 C T 4208 4205 Asn3928Asn
207 France 12050 A 4205 4204
208 France 12051 A 4205 4204
209 France 12052 G 4205 4204
210 France 12053 C 4205 4204
211 France 12054 T 4202 4198
212 France 12055 T 4202 4198
213 France 12056 T 4201 4197
214 France 12057 G 4202 4201
215 France 12058 T 4202 4201
216 France 12059 G 4202 4201
217 France 12060 A 4202 4201
218 France 12061 A 4201 4199
219 France 12062 G 4201 4200
220 France 12063 A 4201 4199
221 France 12064 A 4201 4200
222 France 12065 A 4201 4200
223 France 12066 T 4201 4199
224 France 12067 G A 4201 4199 Met3934Ile
225 France 12068 C T 4201 4200 Leu3935Leu
226 France 12069 T 4201 4201
227 France 12070 G T 4201 4198 Leu3935Leu
228 France 12071 G 4200 4199
229 France 12072 A 4200 4199
230 France 12073 C T 4199 4174 Asp3936Asp
231 France 12074 A 4199 4199
232 France 12075 A 4199 4198
233 France 12076 C T 4198 4193 Asn3937Asn
234 France 12077 A 4195 4194
235 France 12078 G T 4195 4190 Arg3938Met
236 France 12079 G C 4194 4193 Arg3938Ser
237 France 12080 G A 4194 4190 Ala3939Thr
238 France 12081 C T 4193 4192 Ala3939Val
239 France 12082 A T 4191 4189 Ala3939Ala
240 France 12083 A 4191 4191
241 France 12084 C T 4191 4190 Thr3940Ile
242 France 12085 C T 4191 4190 Thr3940Thr
243 France 12086 T 4191 4191
244 France 12087 T 4190 4190
245 France 12088 A 4189 4189
246 France 12089 C 4189 4189
247 France 12090 A 4189 4189
248 France 12091 A 4188 4188