National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15     2                              
E   15       1   1                        
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45         1                          
M   12               1                    
N   9                       1            
Q   18                                    
R   6                                    
S   30         1         1         1      
T   12                                    
V   27                                 1  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Finland 11843 T 995 995
1 Finland 11844 C 995 995
2 Finland 11845 T 995 995
3 Finland 11846 A 995 995
4 Finland 11847 A 995 995
5 Finland 11848 A 995 995
6 Finland 11849 A 995 995
7 Finland 11850 T 995 995
8 Finland 11851 G T 995 994 Met3862Ile
9 Finland 11852 T 995 995
10 Finland 11853 C 995 995
11 Finland 11854 A 995 995
12 Finland 11855 G 995 995
13 Finland 11856 A 995 995
14 Finland 11857 T 995 995
15 Finland 11858 G 995 995
16 Finland 11859 T 995 995
17 Finland 11860 A 995 995
18 Finland 11861 A 995 995
19 Finland 11862 A 995 995
20 Finland 11863 G 995 995
21 Finland 11864 T 995 995
22 Finland 11865 G 995 995
23 Finland 11866 C 995 995
24 Finland 11867 A 995 995
25 Finland 11868 C 995 995
26 Finland 11869 A 995 995
27 Finland 11870 T 995 995
28 Finland 11871 C 995 995
29 Finland 11872 A 995 995
30 Finland 11873 G 995 995
31 Finland 11874 T 995 995
32 Finland 11875 A 995 995
33 Finland 11876 G 995 995
34 Finland 11877 T 995 995
35 Finland 11878 C 995 995
36 Finland 11879 T 995 995
37 Finland 11880 T 995 995
38 Finland 11881 A 995 995
39 Finland 11882 C 995 995
40 Finland 11883 T 995 995
41 Finland 11884 C 995 995
42 Finland 11885 T 995 995
43 Finland 11886 C 995 995
44 Finland 11887 A 995 995
45 Finland 11888 G 995 995
46 Finland 11889 T 995 995
47 Finland 11890 T 995 995
48 Finland 11891 T 995 995
49 Finland 11892 T 995 995
50 Finland 11893 G 995 995
51 Finland 11894 C 995 995
52 Finland 11895 A 995 995
53 Finland 11896 A 995 995
54 Finland 11897 C 995 995
55 Finland 11898 A 995 995
56 Finland 11899 A 995 995
57 Finland 11900 C 995 995
58 Finland 11901 T 995 995
59 Finland 11902 C 995 995
60 Finland 11903 A 995 995
61 Finland 11904 G 995 995
62 Finland 11905 A 995 995
63 Finland 11906 G 995 995
64 Finland 11907 T 995 995
65 Finland 11908 A 995 995
66 Finland 11909 G 995 995
67 Finland 11910 A 995 995
68 Finland 11911 A 995 995
69 Finland 11912 T 995 995
70 Finland 11913 C 995 995
71 Finland 11914 A 995 995
72 Finland 11915 T 995 995
73 Finland 11916 C T 995 994 Ser3884Leu
74 Finland 11917 A 995 995
75 Finland 11918 T 995 995
76 Finland 11919 C T 995 992 Ser3885Phe
77 Finland 11920 T 995 995
78 Finland 11921 A 995 995
79 Finland 11922 A 995 995
80 Finland 11923 A 995 995
81 Finland 11924 T 995 995
82 Finland 11925 T 995 995
83 Finland 11926 G 995 995
84 Finland 11927 T 995 995
85 Finland 11928 G 995 995
86 Finland 11929 G 995 995
87 Finland 11930 G 995 995
88 Finland 11931 C 995 995
89 Finland 11932 T 995 995
90 Finland 11933 C 995 995
91 Finland 11934 A 995 995
92 Finland 11935 A 995 995
93 Finland 11936 T 995 995
94 Finland 11937 G 995 995
95 Finland 11938 T 995 995
96 Finland 11939 G 995 995
97 Finland 11940 T 995 995
98 Finland 11941 C T 995 994 Val3892Val
99 Finland 11942 C 995 995
100 Finland 11943 A 995 995
101 Finland 11944 G 995 995
102 Finland 11945 T 995 995
103 Finland 11946 T 995 995
104 Finland 11947 A 995 995
105 Finland 11948 C 995 995
106 Finland 11949 A 995 995
107 Finland 11950 C 995 995
108 Finland 11951 A 995 995
109 Finland 11952 A 995 995
110 Finland 11953 T 995 995
111 Finland 11954 G 995 995
112 Finland 11955 A 995 995
113 Finland 11956 C T 995 994 Asp3897Asp
114 Finland 11957 A 995 995
115 Finland 11958 T 995 995
116 Finland 11959 T 995 995
117 Finland 11960 C 995 995
118 Finland 11961 T 995 995
119 Finland 11962 C 995 995
120 Finland 11963 T 995 995
121 Finland 11964 T 995 995
122 Finland 11965 A 995 995
123 Finland 11966 G 995 995
124 Finland 11967 C 995 995
125 Finland 11968 T 995 995
126 Finland 11969 A 995 995
127 Finland 11970 A 995 995
128 Finland 11971 A 995 995
129 Finland 11972 G 995 995
130 Finland 11973 A 995 995
131 Finland 11974 T 995 995
132 Finland 11975 A 995 995
133 Finland 11976 C 995 995
134 Finland 11977 T 995 995
135 Finland 11978 A 995 995
136 Finland 11979 C 995 995
137 Finland 11980 T 995 995
138 Finland 11981 G 995 995
139 Finland 11982 A 995 995
140 Finland 11983 A G 995 988 Glu3906Glu
141 Finland 11984 G 995 995
142 Finland 11985 C 995 995
143 Finland 11986 C 995 995
144 Finland 11987 T 995 995
145 Finland 11988 T 995 995
146 Finland 11989 T 995 995
147 Finland 11990 G 995 995
148 Finland 11991 A G 995 994 Glu3909Gly
149 Finland 11992 A 995 995
150 Finland 11993 A 995 995
151 Finland 11994 A 995 995
152 Finland 11995 A 995 995
153 Finland 11996 A 995 995
154 Finland 11997 T 995 995
155 Finland 11998 G 995 995
156 Finland 11999 G 995 995
157 Finland 12000 T 995 995
158 Finland 12001 T 995 995
159 Finland 12002 T 995 995
160 Finland 12003 C 995 995
161 Finland 12004 A 995 995
162 Finland 12005 C 995 995
163 Finland 12006 T 995 995
164 Finland 12007 A 995 995
165 Finland 12008 C T 995 994 Leu3915Phe
166 Finland 12009 T 995 995
167 Finland 12010 T 995 995
168 Finland 12011 T 995 995
169 Finland 12012 C 995 995
170 Finland 12013 T 995 995
171 Finland 12014 G 995 995
172 Finland 12015 T 995 995
173 Finland 12016 T 995 995
174 Finland 12017 T 995 995
175 Finland 12018 T 995 995
176 Finland 12019 G 995 995
177 Finland 12020 C 995 995
178 Finland 12021 T 995 995
179 Finland 12022 T 995 995
180 Finland 12023 T 995 995
181 Finland 12024 C 995 995
182 Finland 12025 C T 995 994 Ser3920Ser
183 Finland 12026 A 995 995
184 Finland 12027 T 995 995
185 Finland 12028 G 995 995
186 Finland 12029 C 995 995
187 Finland 12030 A 995 995
188 Finland 12031 G 995 995
189 Finland 12032 G 995 995
190 Finland 12033 G 995 995
191 Finland 12034 T 995 995
192 Finland 12035 G 995 995
193 Finland 12036 C 995 995
194 Finland 12037 T 995 995
195 Finland 12038 G 995 995
196 Finland 12039 T 995 995
197 Finland 12040 A 995 995
198 Finland 12041 G 995 995
199 Finland 12042 A 995 995
200 Finland 12043 C T 995 994 Asp3926Asp
201 Finland 12044 A 995 995
202 Finland 12045 T 995 995
203 Finland 12046 A 995 995
204 Finland 12047 A 995 995
205 Finland 12048 A 995 995
206 Finland 12049 C 995 995
207 Finland 12050 A 995 995
208 Finland 12051 A 995 995
209 Finland 12052 G 995 995
210 Finland 12053 C 995 995
211 Finland 12054 T 995 995
212 Finland 12055 T 995 995
213 Finland 12056 T 995 995
214 Finland 12057 G 995 995
215 Finland 12058 T 995 995
216 Finland 12059 G 995 995
217 Finland 12060 A 995 995
218 Finland 12061 A 995 995
219 Finland 12062 G 995 995
220 Finland 12063 A 995 995
221 Finland 12064 A 995 995
222 Finland 12065 A 995 995
223 Finland 12066 T 995 995
224 Finland 12067 G 995 995
225 Finland 12068 C 995 995
226 Finland 12069 T 995 995
227 Finland 12070 G 995 995
228 Finland 12071 G 995 995
229 Finland 12072 A 995 995
230 Finland 12073 C 995 995
231 Finland 12074 A 995 995
232 Finland 12075 A 995 995
233 Finland 12076 C T 995 994 Asn3937Asn
234 Finland 12077 A 995 995
235 Finland 12078 G 995 995
236 Finland 12079 G 995 995
237 Finland 12080 G 995 995
238 Finland 12081 C 995 995
239 Finland 12082 A 995 995
240 Finland 12083 A 995 995
241 Finland 12084 C 995 995
242 Finland 12085 C 995 995
243 Finland 12086 T 995 995
244 Finland 12087 T 995 995
245 Finland 12088 A 995 995
246 Finland 12089 C 995 995
247 Finland 12090 A 995 995
248 Finland 12091 A 995 995