National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   243                                        
?                                            
A   15 7                               4 5    
C   9   2                           1        
D   15 2   5 1               3               2
E   14     5 4   2     2                 1    
F   3         1                              
G   2   1       1                 1 1   1    
H   3             1                          
I   6         1     1     1         1 2 2    
K   17                 6     5     2   1      
L   44         9     4   22 1         2   3    
M   12               6   2             3 3    
N   9                 1     3       3        
P                                            
Q   18             3     1       4 2          
R   6           2                 3 1        
S   29 3       2         2     2     13        
T   12 1             4       1       1 5      
V   26 5       3 1   6   3               11    
W   3                                        
Y                                            

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 England 11843 T 190287 190287
1 England 11844 C 190292 190292
2 England 11845 T C,G 190293 190287 Ser3860Ser-p.Ser3860Ser
3 England 11846 A 190293 190290
4 England 11847 A 190293 190291
5 England 11848 A G 190293 190291 Lys3861Lys
6 England 11849 A G 190293 190290 Met3862Val
7 England 11850 T 190293 190292
8 England 11851 G T,A 190294 189797 Met3862Ile-p.Met3862Ile
9 England 11852 T 190297 190292
10 England 11853 C 190297 190290
11 England 11854 A G 190297 190286 Ser3863Ser
12 England 11855 G 190298 190291
13 England 11856 A C 190298 190289 Asp3864Ala
14 England 11857 T C,G 190298 190266 Asp3864Glu-p.Asp3864Asp
15 England 11858 G A 190298 190296 Val3865Ile
16 England 11859 T C 190298 190290 Val3865Ala
17 England 11860 A T,G 190299 190290 Val3865Val-p.Val3865Val
18 England 11861 A 190299 190297
19 England 11862 A 190300 190299
20 England 11863 G A 190302 190296 Lys3866Lys
21 England 11864 T 190331 190325
22 England 11865 G 190333 190325
23 England 11866 C T 190334 190256 Cys3867Cys
24 England 11867 A T 190336 190321 Thr3868Ser
25 England 11868 C T 190339 190305 Thr3868Ile
26 England 11869 A G 190342 190324 Thr3868Thr
27 England 11870 T 190378 190372
28 England 11871 C 190378 190374
29 England 11872 A G 190379 190371 Ser3869Ser
30 England 11873 G A 190379 190371 Val3870Ile
31 England 11874 T 190379 190375
32 England 11875 A G 190379 190366 Val3870Val
33 England 11876 G T,A 190380 190366 Val3871Phe-p.Val3871Ile
34 England 11877 T 190380 190374
35 England 11878 C T 190380 190283 Val3871Val
36 England 11879 T C 190380 190370 Leu3872Leu
37 England 11880 T 190380 190374
38 England 11881 A G 190380 190373 Leu3872Leu
39 England 11882 C T 190381 190371 Leu3873Phe
40 England 11883 T 190381 190369
41 England 11884 C T 190382 190336 Leu3873Leu
42 England 11885 T G 190382 190354 Ser3874Ala
43 England 11886 C T 190382 190339 Ser3874Leu
44 England 11887 A T,G 190382 190358 Ser3874Ser-p.Ser3874Ser
45 England 11888 G 190382 190360
46 England 11889 T C 190382 190355 Val3875Ala
47 England 11890 T 190612 190611
48 England 11891 T C 190612 190611 Leu3876Leu
49 England 11892 T 190612 190612
50 England 11893 G T,A 190612 190602 Leu3876Phe-p.Leu3876Leu
51 England 11894 C 190612 190610
52 England 11895 A 190612 190612
53 England 11896 A 190612 190612
54 England 11897 C 190612 190609
55 England 11898 A 190612 190612
56 England 11899 A C,G 190612 190609 Gln3878His-p.Gln3878Gln
57 England 11900 C T,A 190612 190605 Leu3879Phe-p.Leu3879Ile
58 England 11901 T 190612 190611
59 England 11902 C T 190613 190584 Leu3879Leu
60 England 11903 A G 190613 190610 Arg3880Gly
61 England 11904 G 190613 190612
62 England 11905 A C,G 190613 190608 Arg3880Ser-p.Arg3880Arg
63 England 11906 G C,T,A 190613 190556 Val3881Leu-p.Val3881Ile
64 England 11907 T C 190613 190611 Val3881Ala
65 England 11908 A G 190613 190600 Val3881Val
66 England 11909 G 190613 190612
67 England 11910 A 190613 190613
68 England 11911 A T,G 190613 190610 Glu3882Asp-p.Glu3882Glu
69 England 11912 T G 190613 190612 Ser3883Ala
70 England 11913 C 190613 190612
71 England 11914 A G,T,C 190613 190604 Ser3883Ser-p.Ser3883Ser
72 England 11915 T G 190613 190595 Ser3884Ala
73 England 11916 C T 190613 190460 Ser3884Leu
74 England 11917 A 190613 190613
75 England 11918 T 190613 190613
76 England 11919 C T 190613 190502 Ser3885Phe
77 England 11920 T C 190613 190612 Ser3885Ser
78 England 11921 A 190615 190611
79 England 11922 A 190615 190615
80 England 11923 A G,C 190615 190396 Lys3886Asn-p.Lys3886Lys
81 England 11924 T G 190616 190615 Leu3887Val
82 England 11925 T C 190616 190613 Leu3887Ser
83 England 11926 G A,T 190616 190607 Leu3887Phe-p.Leu3887Leu
84 England 11927 T 190616 190615
85 England 11928 G 190599 190593
86 England 11929 G 190599 190593
87 England 11930 G A 190599 190588 Ala3889Thr
88 England 11931 C T 190599 190583 Ala3889Val
89 England 11932 T G,C 190599 190570 Ala3889Ala-p.Ala3889Ala
90 England 11933 C 190599 190595
91 England 11934 A G 190599 190593 Gln3890Arg
92 England 11935 A G 190599 190589 Gln3890Gln
93 England 11936 T 190599 190596
94 England 11937 G 190599 190594
95 England 11938 T C 190598 190587 Cys3891Cys
96 England 11939 G T 190598 190593 Val3892Phe
97 England 11940 T C 190598 190554 Val3892Ala
98 England 11941 C T,A 190598 190346 Val3892Val-p.Val3892Val
99 England 11942 C 190596 190593
100 England 11943 A T,G 190583 190571 Gln3893Leu-p.Gln3893Arg
101 England 11944 G T,A 190583 190571 Gln3893His-p.Gln3893Gln
102 England 11945 T 190579 190570
103 England 11946 T 190579 190571
104 England 11947 A G 190579 190561 Leu3894Leu
105 England 11948 C 190579 190570
106 England 11949 A 190579 190573
107 England 11950 C T 190579 190464 His3895His
108 England 11951 A 190578 190573
109 England 11952 A G 190577 190570 Asn3896Ser
110 England 11953 T C 190577 190566 Asn3896Asn
111 England 11954 G T 190577 190566 Asp3897Tyr
112 England 11955 A C 190577 190568 Asp3897Ala
113 England 11956 C T 190577 190499 Asp3897Asp
114 England 11957 A G,T 190577 190566 Ile3898Val-p.Ile3898Phe
115 England 11958 T G,C 190577 190568 Ile3898Ser-p.Ile3898Thr
116 England 11959 T 190577 190570
117 England 11960 C T,A 190577 190554 Leu3899Phe-p.Leu3899Ile
118 England 11961 T 190577 190569
119 England 11962 C T,G 190577 190296 Leu3899Leu-p.Leu3899Leu
120 England 11963 T C,G 190577 190570 Leu3900Val-p.Leu3900Leu
121 England 11964 T 190577 190572
122 England 11965 A 190577 190572
123 England 11966 G A 190577 190565 Ala3901Thr
124 England 11967 C T 190577 190569 Ala3901Val
125 England 11968 T C 190577 190572 Ala3901Ala
126 England 11969 A 190577 190570
127 England 11970 A G,C 190577 190551 Lys3902Arg-p.Lys3902Thr
128 England 11971 A G,C 190577 190573 Lys3902Asn-p.Lys3902Lys
129 England 11972 G A 190577 190572 Asp3903Asn
130 England 11973 A 190577 190574
131 England 11974 T C 190577 190554 Asp3903Asp
132 England 11975 A 190577 190574
133 England 11976 C T 190577 190554 Thr3904Ile
134 England 11977 T C,G 190577 190548 Thr3904Thr-p.Thr3904Thr
135 England 11978 A 190577 190575
136 England 11979 C T,A 190577 190566 Thr3905Ile-p.Thr3905Asn
137 England 11980 T C 190577 190562 Thr3905Thr
138 England 11981 G A 190577 190572 Glu3906Lys
139 England 11982 A T,G 190577 190564 Glu3906Val-p.Glu3906Gly
140 England 11983 A G 190577 190548 Glu3906Glu
141 England 11984 G A 190577 190575 Ala3907Thr
142 England 11985 C T 190577 190567 Ala3907Val
143 England 11986 C T 190577 190565 Ala3907Ala
144 England 11987 T 190577 190569
145 England 11988 T 190577 190577
146 England 11989 T C 190577 190574 Phe3908Phe
147 England 11990 G A 190577 190574 Glu3909Lys
148 England 11991 A G 190577 190464 Glu3909Gly
149 England 11992 A T,C 190577 190552 Glu3909Asp-p.Glu3909Asp
150 England 11993 A 190577 190577
151 England 11994 A G 190577 190575 Lys3910Arg
152 England 11995 A G,C 190577 190574 Lys3910Asn-p.Lys3910Lys
153 England 11996 A 190577 190577
154 England 11997 T C 190577 190575 Met3911Thr
155 England 11998 G T 190577 190573 Met3911Ile
156 England 11999 G 190577 190577
157 England 12000 T 190577 190573
158 England 12001 T C 190577 190572 Val3912Val
159 England 12002 T C 190577 190574 Ser3913Pro
160 England 12003 C 190577 190574
161 England 12004 A G 190577 190575 Ser3913Ser
162 England 12005 C T 190577 190545 Leu3914Leu
163 England 12006 T 190577 190576
164 England 12007 A G 190577 190564 Leu3914Leu
165 England 12008 C T,A 190577 190535 Leu3915Phe-p.Leu3915Ile
166 England 12009 T 190577 190574
167 England 12010 T 190577 190575
168 England 12011 T 190577 190577
169 England 12012 C 190577 190576
170 England 12013 T C 190577 190572 Ser3916Ser
171 England 12014 G T,A 190577 190565 Val3917Phe-p.Val3917Ile
172 England 12015 T G,C 190577 190564 Val3917Gly-p.Val3917Ala
173 England 12016 T C 190577 190568 Val3917Val
174 England 12017 T C 190577 190572 Leu3918Leu
175 England 12018 T 190577 190577
176 England 12019 G A,T 190577 190563 Leu3918Phe-p.Leu3918Leu
177 England 12020 C T,A 190577 190520 Leu3919Phe-p.Leu3919Ile
178 England 12021 T 190577 190572
179 England 12022 T C 190577 190573 Leu3919Leu
180 England 12023 T C 190577 190576 Ser3920Pro
181 England 12024 C T 190576 190572 Ser3920Phe
182 England 12025 C T 190576 190477 Ser3920Ser
183 England 12026 A T,G 190576 190566 Met3921Leu-p.Met3921Val
184 England 12027 T C 190576 190549 Met3921Thr
185 England 12028 G T 190576 190560 Met3921Ile
186 England 12029 C 190576 190573
187 England 12030 A 190576 190575
188 England 12031 G A,T 190576 190540 Gln3922His-p.Gln3922Gln
189 England 12032 G C,T,A 190576 190391 Gly3923Cys-p.Gly3923Ser
190 England 12033 G T 190576 190574 Gly3923Val
191 England 12034 T C 190576 190573 Gly3923Gly
192 England 12035 G A 190575 190573 Ala3924Thr
193 England 12036 C T 190575 190546 Ala3924Val
194 England 12037 T C 190575 190567 Ala3924Ala
195 England 12038 G A,C 190575 190566 Val3925Ile-p.Val3925Leu
196 England 12039 T 190575 190574
197 England 12040 A C,G 190575 190567 Val3925Val-p.Val3925Val
198 England 12041 G A 190575 190573 Asp3926Asn
199 England 12042 A 190575 190574
200 England 12043 C T 190575 190411 Asp3926Asp
201 England 12044 A G 190575 190568 Ile3927Val
202 England 12045 T C 190575 190566 Ile3927Thr
203 England 12046 A T,G 190575 190567 Ile3927Met-p.Ile3927Ile
204 England 12047 A 190575 190573
205 England 12048 A G 190575 190571 Asn3928Ser
206 England 12049 C T,G 190575 190489 Asn3928Lys-p.Asn3928Asn
207 England 12050 A 190575 190574
208 England 12051 A 190573 190569
209 England 12052 G T,C,A 190572 190506 Lys3929Asn-p.Lys3929Lys
210 England 12053 C T 190572 190403 Leu3930Phe
211 England 12054 T 190572 190568
212 England 12055 T C 190572 190542 Leu3930Leu
213 England 12056 T A 190572 190568 Cys3931Ser
214 England 12057 G 190572 190569
215 England 12058 T 190572 190568
216 England 12059 G 190572 190565
217 England 12060 A 190572 190570
218 England 12061 A G,C,T 190572 190555 Glu3932Asp-p.Glu3932Glu
219 England 12062 G 190572 190571
220 England 12063 A 190572 190572
221 England 12064 A G 190572 190568 Glu3933Glu
222 England 12065 A C,G 190572 190565 Met3934Leu-p.Met3934Val
223 England 12066 T C 190572 190568 Met3934Thr
224 England 12067 G T,A 190571 188104 Met3934Ile-p.Met3934Ile
225 England 12068 C T,G,A 190571 190515 Leu3935Met-p.Leu3935Leu
226 England 12069 T 190571 190570
227 England 12070 G T,A 190571 190420 Leu3935Leu-p.Leu3935Leu
228 England 12071 G A,T 190571 190533 Asp3936Asn-p.Asp3936Tyr
229 England 12072 A 190571 190569
230 England 12073 C T 190571 190443 Asp3936Asp
231 England 12074 A 190571 190570
232 England 12075 A G 190571 190461 Asn3937Ser
233 England 12076 C T 190571 190389 Asn3937Asn
234 England 12077 A G,C 190571 190567 Arg3938Gly-p.Arg3938Arg
235 England 12078 G 190571 190569
236 England 12079 G A 190571 190520 Arg3938Arg
237 England 12080 G 190571 190569
238 England 12081 C T 190571 190461 Ala3939Val
239 England 12082 A T,G 190571 190563 Ala3939Ala-p.Ala3939Ala
240 England 12083 A G 190570 190569 Thr3940Ala
241 England 12084 C T 190570 190456 Thr3940Ile
242 England 12085 C T 190570 190465 Thr3940Thr
243 England 12086 T C 190570 190517 Leu3941Leu
244 England 12087 T C 190570 190569 Leu3941Ser
245 England 12088 A G 190570 190566 Leu3941Leu
246 England 12089 C 190570 190570
247 England 12090 A 190570 190570
248 England 12091 A 190527 190527