National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 El_Salvador 11843 T 6 6
1 El_Salvador 11844 C 6 6
2 El_Salvador 11845 T 6 6
3 El_Salvador 11846 A 6 6
4 El_Salvador 11847 A 6 6
5 El_Salvador 11848 A 6 6
6 El_Salvador 11849 A 6 6
7 El_Salvador 11850 T 6 6
8 El_Salvador 11851 G 6 6
9 El_Salvador 11852 T 6 6
10 El_Salvador 11853 C 6 6
11 El_Salvador 11854 A 6 6
12 El_Salvador 11855 G 6 6
13 El_Salvador 11856 A 6 6
14 El_Salvador 11857 T 6 6
15 El_Salvador 11858 G 6 6
16 El_Salvador 11859 T 6 6
17 El_Salvador 11860 A 6 6
18 El_Salvador 11861 A 6 6
19 El_Salvador 11862 A 6 6
20 El_Salvador 11863 G 6 6
21 El_Salvador 11864 T 6 6
22 El_Salvador 11865 G 6 6
23 El_Salvador 11866 C 6 6
24 El_Salvador 11867 A 6 6
25 El_Salvador 11868 C 6 6
26 El_Salvador 11869 A 6 6
27 El_Salvador 11870 T 6 6
28 El_Salvador 11871 C 6 6
29 El_Salvador 11872 A 6 6
30 El_Salvador 11873 G 6 6
31 El_Salvador 11874 T 6 6
32 El_Salvador 11875 A 6 6
33 El_Salvador 11876 G 6 6
34 El_Salvador 11877 T 6 6
35 El_Salvador 11878 C 6 6
36 El_Salvador 11879 T 6 6
37 El_Salvador 11880 T 6 6
38 El_Salvador 11881 A 6 6
39 El_Salvador 11882 C 6 6
40 El_Salvador 11883 T 6 6
41 El_Salvador 11884 C 6 6
42 El_Salvador 11885 T 6 6
43 El_Salvador 11886 C 6 6
44 El_Salvador 11887 A 6 6
45 El_Salvador 11888 G 6 6
46 El_Salvador 11889 T 6 6
47 El_Salvador 11890 T 6 6
48 El_Salvador 11891 T 6 6
49 El_Salvador 11892 T 6 6
50 El_Salvador 11893 G 6 6
51 El_Salvador 11894 C 6 6
52 El_Salvador 11895 A 6 6
53 El_Salvador 11896 A 6 6
54 El_Salvador 11897 C 6 6
55 El_Salvador 11898 A 6 6
56 El_Salvador 11899 A 6 6
57 El_Salvador 11900 C 6 6
58 El_Salvador 11901 T 6 6
59 El_Salvador 11902 C 6 6
60 El_Salvador 11903 A 6 6
61 El_Salvador 11904 G 6 6
62 El_Salvador 11905 A 6 6
63 El_Salvador 11906 G 6 6
64 El_Salvador 11907 T 6 6
65 El_Salvador 11908 A 6 6
66 El_Salvador 11909 G 6 6
67 El_Salvador 11910 A 6 6
68 El_Salvador 11911 A 6 6
69 El_Salvador 11912 T 6 6
70 El_Salvador 11913 C 6 6
71 El_Salvador 11914 A 6 6
72 El_Salvador 11915 T 6 6
73 El_Salvador 11916 C 6 6
74 El_Salvador 11917 A 6 6
75 El_Salvador 11918 T 6 6
76 El_Salvador 11919 C 6 6
77 El_Salvador 11920 T 6 6
78 El_Salvador 11921 A 6 6
79 El_Salvador 11922 A 6 6
80 El_Salvador 11923 A 6 6
81 El_Salvador 11924 T 6 6
82 El_Salvador 11925 T 6 6
83 El_Salvador 11926 G 6 6
84 El_Salvador 11927 T 6 6
85 El_Salvador 11928 G 6 6
86 El_Salvador 11929 G 6 6
87 El_Salvador 11930 G 6 6
88 El_Salvador 11931 C 6 6
89 El_Salvador 11932 T 6 6
90 El_Salvador 11933 C 6 6
91 El_Salvador 11934 A 6 6
92 El_Salvador 11935 A 6 6
93 El_Salvador 11936 T 6 6
94 El_Salvador 11937 G 6 6
95 El_Salvador 11938 T 6 6
96 El_Salvador 11939 G 6 6
97 El_Salvador 11940 T 6 6
98 El_Salvador 11941 C 6 6
99 El_Salvador 11942 C 6 6
100 El_Salvador 11943 A 6 6
101 El_Salvador 11944 G 6 6
102 El_Salvador 11945 T 6 6
103 El_Salvador 11946 T 6 6
104 El_Salvador 11947 A 6 6
105 El_Salvador 11948 C 6 6
106 El_Salvador 11949 A 6 6
107 El_Salvador 11950 C 6 6
108 El_Salvador 11951 A 6 6
109 El_Salvador 11952 A 6 6
110 El_Salvador 11953 T 6 6
111 El_Salvador 11954 G 6 6
112 El_Salvador 11955 A 6 6
113 El_Salvador 11956 C 6 6
114 El_Salvador 11957 A 6 6
115 El_Salvador 11958 T 6 6
116 El_Salvador 11959 T 6 6
117 El_Salvador 11960 C 6 6
118 El_Salvador 11961 T 6 6
119 El_Salvador 11962 C 6 6
120 El_Salvador 11963 T 6 6
121 El_Salvador 11964 T 6 6
122 El_Salvador 11965 A 6 6
123 El_Salvador 11966 G 6 6
124 El_Salvador 11967 C 6 6
125 El_Salvador 11968 T 6 6
126 El_Salvador 11969 A 6 6
127 El_Salvador 11970 A 6 6
128 El_Salvador 11971 A 6 6
129 El_Salvador 11972 G 6 6
130 El_Salvador 11973 A 6 6
131 El_Salvador 11974 T 6 6
132 El_Salvador 11975 A 6 6
133 El_Salvador 11976 C 6 6
134 El_Salvador 11977 T 6 6
135 El_Salvador 11978 A 6 6
136 El_Salvador 11979 C 6 6
137 El_Salvador 11980 T 6 6
138 El_Salvador 11981 G 6 6
139 El_Salvador 11982 A 6 6
140 El_Salvador 11983 A 6 6
141 El_Salvador 11984 G 6 6
142 El_Salvador 11985 C 6 6
143 El_Salvador 11986 C 6 6
144 El_Salvador 11987 T 6 6
145 El_Salvador 11988 T 6 6
146 El_Salvador 11989 T 6 6
147 El_Salvador 11990 G 6 6
148 El_Salvador 11991 A 6 6
149 El_Salvador 11992 A 6 6
150 El_Salvador 11993 A 6 6
151 El_Salvador 11994 A 6 6
152 El_Salvador 11995 A 6 6
153 El_Salvador 11996 A 6 6
154 El_Salvador 11997 T 6 6
155 El_Salvador 11998 G 6 6
156 El_Salvador 11999 G 6 6
157 El_Salvador 12000 T 6 6
158 El_Salvador 12001 T 6 6
159 El_Salvador 12002 T 6 6
160 El_Salvador 12003 C 6 6
161 El_Salvador 12004 A 6 6
162 El_Salvador 12005 C 6 6
163 El_Salvador 12006 T 6 6
164 El_Salvador 12007 A 6 6
165 El_Salvador 12008 C 6 6
166 El_Salvador 12009 T 6 6
167 El_Salvador 12010 T 6 6
168 El_Salvador 12011 T 6 6
169 El_Salvador 12012 C 6 6
170 El_Salvador 12013 T 6 6
171 El_Salvador 12014 G 6 6
172 El_Salvador 12015 T 6 6
173 El_Salvador 12016 T 6 6
174 El_Salvador 12017 T 6 6
175 El_Salvador 12018 T 6 6
176 El_Salvador 12019 G 6 6
177 El_Salvador 12020 C 6 6
178 El_Salvador 12021 T 6 6
179 El_Salvador 12022 T 6 6
180 El_Salvador 12023 T 6 6
181 El_Salvador 12024 C 6 6
182 El_Salvador 12025 C 6 6
183 El_Salvador 12026 A 6 6
184 El_Salvador 12027 T 6 6
185 El_Salvador 12028 G 6 6
186 El_Salvador 12029 C 6 6
187 El_Salvador 12030 A 6 6
188 El_Salvador 12031 G 6 6
189 El_Salvador 12032 G 6 6
190 El_Salvador 12033 G 6 6
191 El_Salvador 12034 T 6 6
192 El_Salvador 12035 G 6 6
193 El_Salvador 12036 C 6 6
194 El_Salvador 12037 T 6 6
195 El_Salvador 12038 G 6 6
196 El_Salvador 12039 T 6 6
197 El_Salvador 12040 A 6 6
198 El_Salvador 12041 G 6 6
199 El_Salvador 12042 A 6 6
200 El_Salvador 12043 C 6 6
201 El_Salvador 12044 A 6 6
202 El_Salvador 12045 T 6 6
203 El_Salvador 12046 A 6 6
204 El_Salvador 12047 A 6 6
205 El_Salvador 12048 A 6 6
206 El_Salvador 12049 C 6 6
207 El_Salvador 12050 A 6 6
208 El_Salvador 12051 A 6 6
209 El_Salvador 12052 G 6 6
210 El_Salvador 12053 C 6 6
211 El_Salvador 12054 T 6 6
212 El_Salvador 12055 T 6 6
213 El_Salvador 12056 T 6 6
214 El_Salvador 12057 G 6 6
215 El_Salvador 12058 T 6 6
216 El_Salvador 12059 G 6 6
217 El_Salvador 12060 A 6 6
218 El_Salvador 12061 A 6 6
219 El_Salvador 12062 G 6 6
220 El_Salvador 12063 A 6 6
221 El_Salvador 12064 A 6 6
222 El_Salvador 12065 A 6 6
223 El_Salvador 12066 T 6 6
224 El_Salvador 12067 G 6 6
225 El_Salvador 12068 C 6 6
226 El_Salvador 12069 T 6 6
227 El_Salvador 12070 G 6 6
228 El_Salvador 12071 G 6 6
229 El_Salvador 12072 A 6 6
230 El_Salvador 12073 C 6 6
231 El_Salvador 12074 A 6 6
232 El_Salvador 12075 A 6 6
233 El_Salvador 12076 C 6 6
234 El_Salvador 12077 A 6 6
235 El_Salvador 12078 G 6 6
236 El_Salvador 12079 G 6 6
237 El_Salvador 12080 G 6 6
238 El_Salvador 12081 C 6 6
239 El_Salvador 12082 A 6 6
240 El_Salvador 12083 A 6 6
241 El_Salvador 12084 C 6 6
242 El_Salvador 12085 C 6 6
243 El_Salvador 12086 T 6 6
244 El_Salvador 12087 T 6 6
245 El_Salvador 12088 A 6 6
246 El_Salvador 12089 C 6 6
247 El_Salvador 12090 A 6 6
248 El_Salvador 12091 A 6 6