National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W
-   249                                      
?                                          
A   15                                      
C   9   1                                  
D   15                                      
E   15           1                          
F   3                                      
G   3                                      
H   3                                      
I   6                                      
K   18                                      
L   45         1               1            
M   12                                      
N   9                       2              
P                                          
Q   18                                      
R   6                                      
S   30 1                                    
T   12                                      
V   27                                   1  
W   3                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Egypt 11843 T 366 366
1 Egypt 11844 C 366 366
2 Egypt 11845 T 366 366
3 Egypt 11846 A 366 365
4 Egypt 11847 A 366 366
5 Egypt 11848 A 366 366
6 Egypt 11849 A 366 366
7 Egypt 11850 T 366 366
8 Egypt 11851 G 366 366
9 Egypt 11852 T 366 366
10 Egypt 11853 C 366 366
11 Egypt 11854 A 366 366
12 Egypt 11855 G 366 366
13 Egypt 11856 A 366 366
14 Egypt 11857 T 366 366
15 Egypt 11858 G 366 366
16 Egypt 11859 T 366 366
17 Egypt 11860 A 366 366
18 Egypt 11861 A 366 366
19 Egypt 11862 A 366 366
20 Egypt 11863 G 366 366
21 Egypt 11864 T 366 366
22 Egypt 11865 G 366 366
23 Egypt 11866 C T 366 365 Cys3867Cys
24 Egypt 11867 A 366 366
25 Egypt 11868 C 366 366
26 Egypt 11869 A 366 366
27 Egypt 11870 T 366 366
28 Egypt 11871 C 366 366
29 Egypt 11872 A 366 366
30 Egypt 11873 G 366 366
31 Egypt 11874 T 366 366
32 Egypt 11875 A 366 366
33 Egypt 11876 G 366 366
34 Egypt 11877 T 366 366
35 Egypt 11878 C 366 366
36 Egypt 11879 T 366 366
37 Egypt 11880 T 366 366
38 Egypt 11881 A 366 366
39 Egypt 11882 C 366 366
40 Egypt 11883 T 366 366
41 Egypt 11884 C 366 366
42 Egypt 11885 T 366 366
43 Egypt 11886 C 366 366
44 Egypt 11887 A 366 366
45 Egypt 11888 G 366 366
46 Egypt 11889 T 366 366
47 Egypt 11890 T 366 366
48 Egypt 11891 T 366 366
49 Egypt 11892 T 366 366
50 Egypt 11893 G 366 366
51 Egypt 11894 C 366 366
52 Egypt 11895 A 366 366
53 Egypt 11896 A 366 366
54 Egypt 11897 C 366 366
55 Egypt 11898 A 366 366
56 Egypt 11899 A 366 366
57 Egypt 11900 C 366 366
58 Egypt 11901 T 366 366
59 Egypt 11902 C 366 366
60 Egypt 11903 A 366 366
61 Egypt 11904 G 366 366
62 Egypt 11905 A 366 366
63 Egypt 11906 G 366 366
64 Egypt 11907 T 366 366
65 Egypt 11908 A 366 366
66 Egypt 11909 G 366 366
67 Egypt 11910 A 366 366
68 Egypt 11911 A 366 366
69 Egypt 11912 T 366 366
70 Egypt 11913 C 366 366
71 Egypt 11914 A 366 366
72 Egypt 11915 T 366 366
73 Egypt 11916 C 366 365
74 Egypt 11917 A 366 366
75 Egypt 11918 T 366 366
76 Egypt 11919 C 366 366
77 Egypt 11920 T 366 366
78 Egypt 11921 A 366 366
79 Egypt 11922 A 366 366
80 Egypt 11923 A 366 366
81 Egypt 11924 T 366 366
82 Egypt 11925 T 366 366
83 Egypt 11926 G 366 366
84 Egypt 11927 T 366 366
85 Egypt 11928 G 366 366
86 Egypt 11929 G 366 366
87 Egypt 11930 G 366 366
88 Egypt 11931 C 366 366
89 Egypt 11932 T 366 366
90 Egypt 11933 C 366 366
91 Egypt 11934 A 366 366
92 Egypt 11935 A 366 366
93 Egypt 11936 T 366 366
94 Egypt 11937 G 366 366
95 Egypt 11938 T 366 366
96 Egypt 11939 G 366 366
97 Egypt 11940 T 366 366
98 Egypt 11941 C T 366 365 Val3892Val
99 Egypt 11942 C 366 366
100 Egypt 11943 A 366 366
101 Egypt 11944 G 366 366
102 Egypt 11945 T 366 366
103 Egypt 11946 T 366 366
104 Egypt 11947 A 366 366
105 Egypt 11948 C 366 366
106 Egypt 11949 A 366 366
107 Egypt 11950 C 366 366
108 Egypt 11951 A 366 366
109 Egypt 11952 A 366 366
110 Egypt 11953 T 366 366
111 Egypt 11954 G 366 366
112 Egypt 11955 A 366 366
113 Egypt 11956 C 366 366
114 Egypt 11957 A 366 366
115 Egypt 11958 T 366 366
116 Egypt 11959 T 366 366
117 Egypt 11960 C 366 366
118 Egypt 11961 T 366 366
119 Egypt 11962 C 366 366
120 Egypt 11963 T 366 366
121 Egypt 11964 T 366 366
122 Egypt 11965 A 366 366
123 Egypt 11966 G 366 366
124 Egypt 11967 C 366 365
125 Egypt 11968 T 366 366
126 Egypt 11969 A 366 366
127 Egypt 11970 A 366 366
128 Egypt 11971 A 366 366
129 Egypt 11972 G 366 366
130 Egypt 11973 A 366 366
131 Egypt 11974 T 366 366
132 Egypt 11975 A 366 366
133 Egypt 11976 C 366 366
134 Egypt 11977 T 366 366
135 Egypt 11978 A 366 366
136 Egypt 11979 C 366 366
137 Egypt 11980 T 366 366
138 Egypt 11981 G 366 366
139 Egypt 11982 A 366 366
140 Egypt 11983 A 366 366
141 Egypt 11984 G 366 366
142 Egypt 11985 C 366 366
143 Egypt 11986 C 366 366
144 Egypt 11987 T 366 366
145 Egypt 11988 T 366 366
146 Egypt 11989 T 366 366
147 Egypt 11990 G 366 366
148 Egypt 11991 A G 366 363 Glu3909Gly
149 Egypt 11992 A 366 366
150 Egypt 11993 A 366 366
151 Egypt 11994 A 366 366
152 Egypt 11995 A 366 366
153 Egypt 11996 A 366 366
154 Egypt 11997 T 366 366
155 Egypt 11998 G 366 366
156 Egypt 11999 G 366 366
157 Egypt 12000 T 366 366
158 Egypt 12001 T 366 366
159 Egypt 12002 T 366 366
160 Egypt 12003 C 366 366
161 Egypt 12004 A 366 366
162 Egypt 12005 C 366 366
163 Egypt 12006 T 366 366
164 Egypt 12007 A 366 366
165 Egypt 12008 C 366 366
166 Egypt 12009 T 366 366
167 Egypt 12010 T 366 366
168 Egypt 12011 T 366 366
169 Egypt 12012 C 366 366
170 Egypt 12013 T 366 366
171 Egypt 12014 G 366 366
172 Egypt 12015 T 366 366
173 Egypt 12016 T 366 366
174 Egypt 12017 T 366 366
175 Egypt 12018 T 366 366
176 Egypt 12019 G 366 366
177 Egypt 12020 C 366 366
178 Egypt 12021 T 366 366
179 Egypt 12022 T 366 366
180 Egypt 12023 T G 366 362 Ser3920Ala
181 Egypt 12024 C 366 366
182 Egypt 12025 C 366 366
183 Egypt 12026 A 366 366
184 Egypt 12027 T 366 366
185 Egypt 12028 G 366 366
186 Egypt 12029 C 366 366
187 Egypt 12030 A 366 366
188 Egypt 12031 G 366 366
189 Egypt 12032 G 366 366
190 Egypt 12033 G 366 366
191 Egypt 12034 T 366 366
192 Egypt 12035 G 366 366
193 Egypt 12036 C 366 365
194 Egypt 12037 T 366 366
195 Egypt 12038 G 366 366
196 Egypt 12039 T 366 366
197 Egypt 12040 A 366 366
198 Egypt 12041 G 366 366
199 Egypt 12042 A 366 366
200 Egypt 12043 C 366 366
201 Egypt 12044 A 366 366
202 Egypt 12045 T 366 366
203 Egypt 12046 A 366 366
204 Egypt 12047 A 366 366
205 Egypt 12048 A 366 366
206 Egypt 12049 C T 366 365 Asn3928Asn
207 Egypt 12050 A 366 366
208 Egypt 12051 A 366 366
209 Egypt 12052 G 366 366
210 Egypt 12053 C T 366 364 Leu3930Phe
211 Egypt 12054 T 366 366
212 Egypt 12055 T 366 366
213 Egypt 12056 T 366 366
214 Egypt 12057 G 366 366
215 Egypt 12058 T 366 366
216 Egypt 12059 G 366 366
217 Egypt 12060 A 366 366
218 Egypt 12061 A 366 366
219 Egypt 12062 G 366 366
220 Egypt 12063 A 366 366
221 Egypt 12064 A 366 366
222 Egypt 12065 A 366 366
223 Egypt 12066 T 366 366
224 Egypt 12067 G 366 366
225 Egypt 12068 C 366 366
226 Egypt 12069 T C 366 365 Leu3935Pro
227 Egypt 12070 G 366 366
228 Egypt 12071 G 366 366
229 Egypt 12072 A 366 366
230 Egypt 12073 C 366 366
231 Egypt 12074 A 366 366
232 Egypt 12075 A 366 366
233 Egypt 12076 C T 366 364 Asn3937Asn
234 Egypt 12077 A 366 366
235 Egypt 12078 G 366 366
236 Egypt 12079 G 366 366
237 Egypt 12080 G 366 366
238 Egypt 12081 C 366 366
239 Egypt 12082 A 366 366
240 Egypt 12083 A 366 366
241 Egypt 12084 C 366 366
242 Egypt 12085 C 366 366
243 Egypt 12086 T 366 366
244 Egypt 12087 T 366 366
245 Egypt 12088 A 366 366
246 Egypt 12089 C 366 366
247 Egypt 12090 A 366 366
248 Egypt 12091 A 366 366