National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15       1                            
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                       1            
L   45                                    
M   12                                    
N   9                 1                  
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Ecuador 11843 T 208 208
1 Ecuador 11844 C 208 208
2 Ecuador 11845 T 208 208
3 Ecuador 11846 A 208 208
4 Ecuador 11847 A 208 208
5 Ecuador 11848 A 208 208
6 Ecuador 11849 A 208 208
7 Ecuador 11850 T 208 208
8 Ecuador 11851 G 208 208
9 Ecuador 11852 T 208 208
10 Ecuador 11853 C 208 208
11 Ecuador 11854 A 208 208
12 Ecuador 11855 G 208 208
13 Ecuador 11856 A 208 208
14 Ecuador 11857 T 208 208
15 Ecuador 11858 G 208 208
16 Ecuador 11859 T 208 208
17 Ecuador 11860 A 208 208
18 Ecuador 11861 A 208 208
19 Ecuador 11862 A 208 208
20 Ecuador 11863 G 208 208
21 Ecuador 11864 T 208 208
22 Ecuador 11865 G 208 208
23 Ecuador 11866 C 208 208
24 Ecuador 11867 A 208 208
25 Ecuador 11868 C 208 208
26 Ecuador 11869 A 208 208
27 Ecuador 11870 T 208 208
28 Ecuador 11871 C 208 208
29 Ecuador 11872 A 208 208
30 Ecuador 11873 G 208 208
31 Ecuador 11874 T 208 208
32 Ecuador 11875 A 208 208
33 Ecuador 11876 G 208 208
34 Ecuador 11877 T 208 208
35 Ecuador 11878 C 208 208
36 Ecuador 11879 T 208 208
37 Ecuador 11880 T 208 208
38 Ecuador 11881 A 208 208
39 Ecuador 11882 C 208 208
40 Ecuador 11883 T 208 208
41 Ecuador 11884 C 208 208
42 Ecuador 11885 T 208 208
43 Ecuador 11886 C 208 208
44 Ecuador 11887 A 208 208
45 Ecuador 11888 G 208 208
46 Ecuador 11889 T 208 208
47 Ecuador 11890 T 208 208
48 Ecuador 11891 T 208 208
49 Ecuador 11892 T 208 208
50 Ecuador 11893 G 208 208
51 Ecuador 11894 C 208 208
52 Ecuador 11895 A 208 208
53 Ecuador 11896 A 208 208
54 Ecuador 11897 C 208 208
55 Ecuador 11898 A 208 208
56 Ecuador 11899 A 208 208
57 Ecuador 11900 C 208 208
58 Ecuador 11901 T 208 208
59 Ecuador 11902 C 208 208
60 Ecuador 11903 A 208 208
61 Ecuador 11904 G 208 208
62 Ecuador 11905 A 208 208
63 Ecuador 11906 G 208 208
64 Ecuador 11907 T 208 208
65 Ecuador 11908 A 208 208
66 Ecuador 11909 G 208 208
67 Ecuador 11910 A 208 208
68 Ecuador 11911 A 208 208
69 Ecuador 11912 T 208 208
70 Ecuador 11913 C 208 208
71 Ecuador 11914 A 208 208
72 Ecuador 11915 T 208 208
73 Ecuador 11916 C 208 208
74 Ecuador 11917 A 208 208
75 Ecuador 11918 T 208 208
76 Ecuador 11919 C 208 208
77 Ecuador 11920 T 208 208
78 Ecuador 11921 A 208 208
79 Ecuador 11922 A 208 208
80 Ecuador 11923 A 208 208
81 Ecuador 11924 T 208 208
82 Ecuador 11925 T 208 208
83 Ecuador 11926 G 208 208
84 Ecuador 11927 T 208 208
85 Ecuador 11928 G 208 208
86 Ecuador 11929 G 208 208
87 Ecuador 11930 G 208 208
88 Ecuador 11931 C 208 208
89 Ecuador 11932 T 208 208
90 Ecuador 11933 C 208 208
91 Ecuador 11934 A 208 208
92 Ecuador 11935 A 208 208
93 Ecuador 11936 T 208 208
94 Ecuador 11937 G 208 208
95 Ecuador 11938 T 208 208
96 Ecuador 11939 G 208 208
97 Ecuador 11940 T 208 208
98 Ecuador 11941 C 208 208
99 Ecuador 11942 C 208 208
100 Ecuador 11943 A 208 208
101 Ecuador 11944 G 208 208
102 Ecuador 11945 T 208 208
103 Ecuador 11946 T 208 208
104 Ecuador 11947 A 208 208
105 Ecuador 11948 C 208 208
106 Ecuador 11949 A 208 208
107 Ecuador 11950 C 208 208
108 Ecuador 11951 A 208 208
109 Ecuador 11952 A 208 208
110 Ecuador 11953 T 208 208
111 Ecuador 11954 G 208 208
112 Ecuador 11955 A 208 208
113 Ecuador 11956 C 208 208
114 Ecuador 11957 A 208 208
115 Ecuador 11958 T 208 208
116 Ecuador 11959 T 208 208
117 Ecuador 11960 C 208 208
118 Ecuador 11961 T 208 208
119 Ecuador 11962 C 208 208
120 Ecuador 11963 T 208 208
121 Ecuador 11964 T 208 208
122 Ecuador 11965 A 208 208
123 Ecuador 11966 G 208 208
124 Ecuador 11967 C 208 208
125 Ecuador 11968 T 208 208
126 Ecuador 11969 A 208 208
127 Ecuador 11970 A 208 208
128 Ecuador 11971 A 208 208
129 Ecuador 11972 G 208 208
130 Ecuador 11973 A 208 208
131 Ecuador 11974 T 208 208
132 Ecuador 11975 A 208 208
133 Ecuador 11976 C 208 208
134 Ecuador 11977 T 208 208
135 Ecuador 11978 A 208 208
136 Ecuador 11979 C 208 208
137 Ecuador 11980 T 208 208
138 Ecuador 11981 G 208 208
139 Ecuador 11982 A 208 208
140 Ecuador 11983 A G 208 200 Glu3906Glu
141 Ecuador 11984 G 208 208
142 Ecuador 11985 C 208 208
143 Ecuador 11986 C 208 208
144 Ecuador 11987 T 208 208
145 Ecuador 11988 T 208 208
146 Ecuador 11989 T 208 208
147 Ecuador 11990 G 208 208
148 Ecuador 11991 A 208 208
149 Ecuador 11992 A 208 208
150 Ecuador 11993 A 208 208
151 Ecuador 11994 A 208 208
152 Ecuador 11995 A 208 208
153 Ecuador 11996 A 208 208
154 Ecuador 11997 T 208 208
155 Ecuador 11998 G 208 208
156 Ecuador 11999 G 208 208
157 Ecuador 12000 T 208 208
158 Ecuador 12001 T 208 208
159 Ecuador 12002 T 208 208
160 Ecuador 12003 C 208 208
161 Ecuador 12004 A 208 208
162 Ecuador 12005 C 208 208
163 Ecuador 12006 T 208 208
164 Ecuador 12007 A 208 208
165 Ecuador 12008 C 208 208
166 Ecuador 12009 T 208 208
167 Ecuador 12010 T 208 208
168 Ecuador 12011 T 208 208
169 Ecuador 12012 C 208 208
170 Ecuador 12013 T 208 208
171 Ecuador 12014 G 208 208
172 Ecuador 12015 T 208 208
173 Ecuador 12016 T 208 208
174 Ecuador 12017 T 208 208
175 Ecuador 12018 T 208 208
176 Ecuador 12019 G 208 208
177 Ecuador 12020 C 208 208
178 Ecuador 12021 T 208 208
179 Ecuador 12022 T 208 208
180 Ecuador 12023 T 208 208
181 Ecuador 12024 C 208 208
182 Ecuador 12025 C 208 208
183 Ecuador 12026 A 208 208
184 Ecuador 12027 T 208 208
185 Ecuador 12028 G 208 208
186 Ecuador 12029 C 208 208
187 Ecuador 12030 A 208 208
188 Ecuador 12031 G 208 208
189 Ecuador 12032 G 208 208
190 Ecuador 12033 G 208 208
191 Ecuador 12034 T 208 208
192 Ecuador 12035 G 208 208
193 Ecuador 12036 C 208 208
194 Ecuador 12037 T 208 208
195 Ecuador 12038 G 208 208
196 Ecuador 12039 T 208 208
197 Ecuador 12040 A 208 208
198 Ecuador 12041 G 208 208
199 Ecuador 12042 A 208 208
200 Ecuador 12043 C 208 208
201 Ecuador 12044 A 208 208
202 Ecuador 12045 T 208 208
203 Ecuador 12046 A 208 208
204 Ecuador 12047 A 208 208
205 Ecuador 12048 A 208 208
206 Ecuador 12049 C 208 208
207 Ecuador 12050 A 208 208
208 Ecuador 12051 A 208 208
209 Ecuador 12052 G T 208 207 Lys3929Asn
210 Ecuador 12053 C 208 208
211 Ecuador 12054 T 208 208
212 Ecuador 12055 T 208 208
213 Ecuador 12056 T 208 208
214 Ecuador 12057 G 208 208
215 Ecuador 12058 T 208 208
216 Ecuador 12059 G 208 208
217 Ecuador 12060 A 208 208
218 Ecuador 12061 A 208 208
219 Ecuador 12062 G 208 208
220 Ecuador 12063 A 208 208
221 Ecuador 12064 A 208 208
222 Ecuador 12065 A 208 208
223 Ecuador 12066 T 208 208
224 Ecuador 12067 G 208 208
225 Ecuador 12068 C 208 208
226 Ecuador 12069 T 208 208
227 Ecuador 12070 G 208 208
228 Ecuador 12071 G 208 208
229 Ecuador 12072 A 208 208
230 Ecuador 12073 C 208 208
231 Ecuador 12074 A 208 208
232 Ecuador 12075 A 208 208
233 Ecuador 12076 C A 208 206 Asn3937Lys
234 Ecuador 12077 A 208 208
235 Ecuador 12078 G 208 208
236 Ecuador 12079 G 208 208
237 Ecuador 12080 G 208 208
238 Ecuador 12081 C 208 208
239 Ecuador 12082 A 208 208
240 Ecuador 12083 A 208 208
241 Ecuador 12084 C 208 208
242 Ecuador 12085 C 208 208
243 Ecuador 12086 T 208 208
244 Ecuador 12087 T 208 208
245 Ecuador 12088 A 208 208
246 Ecuador 12089 C 208 208
247 Ecuador 12090 A 208 208
248 Ecuador 12091 A 208 208