National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W Y
-   248                                      
?                                          
A   15 2                           1   4    
C   9   3                         1        
D   15 1   4                               1
E   15       1   1                          
F   3                                      
G   3   1                                  
H   3                                      
I   6                                      
K   18               1 2     1   1          
L   44         6         10                  
M   12               4               1 1    
N   9                       3     1        
Q   18                   1     1            
R   6                                      
S   30 1       2         3         2        
T   12 1             2               1      
V   27           1   2   1             4    
W   3                                      
Y                                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Denmark 11843 T 34671 34671
1 Denmark 11844 C 34671 34671
2 Denmark 11845 T 34671 34670
3 Denmark 11846 A 34671 34671
4 Denmark 11847 A 34671 34671
5 Denmark 11848 A 34671 34671
6 Denmark 11849 A 34671 34671
7 Denmark 11850 T C 34671 34645 Met3862Thr
8 Denmark 11851 G T,C 34671 34559 Met3862Ile-p.Met3862Ile
9 Denmark 11852 T 34671 34671
10 Denmark 11853 C 34671 34671
11 Denmark 11854 A 34671 34671
12 Denmark 11855 G 34671 34671
13 Denmark 11856 A 34671 34671
14 Denmark 11857 T 34671 34671
15 Denmark 11858 G 34671 34671
16 Denmark 11859 T 34671 34670
17 Denmark 11860 A 34671 34671
18 Denmark 11861 A 34671 34671
19 Denmark 11862 A G 34671 34670 Lys3866Arg
20 Denmark 11863 G A 34671 34669 Lys3866Lys
21 Denmark 11864 T 34671 34671
22 Denmark 11865 G 34671 34671
23 Denmark 11866 C T 34671 34657 Cys3867Cys
24 Denmark 11867 A 34671 34671
25 Denmark 11868 C T 34671 34669 Thr3868Ile
26 Denmark 11869 A 34671 34671
27 Denmark 11870 T 34671 34671
28 Denmark 11871 C 34671 34671
29 Denmark 11872 A 34671 34671
30 Denmark 11873 G 34671 34671
31 Denmark 11874 T 34671 34671
32 Denmark 11875 A 34671 34671
33 Denmark 11876 G 34671 34671
34 Denmark 11877 T 34671 34671
35 Denmark 11878 C A,T 34671 34596 Val3871Val-p.Val3871Val
36 Denmark 11879 T 34671 34670
37 Denmark 11880 T 34671 34670
38 Denmark 11881 A 34671 34670
39 Denmark 11882 C T 34671 34666 Leu3873Phe
40 Denmark 11883 T 34671 34670
41 Denmark 11884 C 34671 34670
42 Denmark 11885 T 34671 34670
43 Denmark 11886 C T 34671 34668 Ser3874Leu
44 Denmark 11887 A 34671 34670
45 Denmark 11888 G 34671 34668
46 Denmark 11889 T 34671 34670
47 Denmark 11890 T 34768 34768
48 Denmark 11891 T C 34768 34763 Leu3876Leu
49 Denmark 11892 T 34768 34768
50 Denmark 11893 G T 34768 34758 Leu3876Phe
51 Denmark 11894 C 34768 34767
52 Denmark 11895 A 34768 34768
53 Denmark 11896 A 34768 34768
54 Denmark 11897 C 34768 34767
55 Denmark 11898 A 34768 34767
56 Denmark 11899 A 34768 34768
57 Denmark 11900 C T 34768 34764 Leu3879Phe
58 Denmark 11901 T 34768 34768
59 Denmark 11902 C 34768 34768
60 Denmark 11903 A 34767 34767
61 Denmark 11904 G 34767 34767
62 Denmark 11905 A 34767 34767
63 Denmark 11906 G A,T 34767 34763 Val3881Ile-p.Val3881Leu
64 Denmark 11907 T 34767 34767
65 Denmark 11908 A 34767 34767
66 Denmark 11909 G 34767 34766
67 Denmark 11910 A 34767 34766
68 Denmark 11911 A 34767 34767
69 Denmark 11912 T 34767 34767
70 Denmark 11913 C 34767 34767
71 Denmark 11914 A 34767 34767
72 Denmark 11915 T G 34767 34765 Ser3884Ala
73 Denmark 11916 C T 34767 34759 Ser3884Leu
74 Denmark 11917 A 34767 34767
75 Denmark 11918 T 34767 34767
76 Denmark 11919 C T 34767 34755 Ser3885Phe
77 Denmark 11920 T 34767 34765
78 Denmark 11921 A 34767 34767
79 Denmark 11922 A T 34767 34766 Lys3886Ile
80 Denmark 11923 A G 34767 34760 Lys3886Lys
81 Denmark 11924 T 34767 34767
82 Denmark 11925 T 34767 34767
83 Denmark 11926 G 34767 34767
84 Denmark 11927 T 34767 34767
85 Denmark 11928 G 34758 34758
86 Denmark 11929 G 34758 34757
87 Denmark 11930 G 34758 34758
88 Denmark 11931 C T 34758 34756 Ala3889Val
89 Denmark 11932 T 34758 34758
90 Denmark 11933 C 34758 34758
91 Denmark 11934 A T 34758 34757 Gln3890Leu
92 Denmark 11935 A 34758 34758
93 Denmark 11936 T 34758 34758
94 Denmark 11937 G 34758 34758
95 Denmark 11938 T C 34758 34751 Cys3891Cys
96 Denmark 11939 G 34758 34757
97 Denmark 11940 T 34758 34758
98 Denmark 11941 C T 34758 34708 Val3892Val
99 Denmark 11942 C 34758 34758
100 Denmark 11943 A 34758 34758
101 Denmark 11944 G 34758 34757
102 Denmark 11945 T 34758 34758
103 Denmark 11946 T 34758 34758
104 Denmark 11947 A 34758 34758
105 Denmark 11948 C 34758 34758
106 Denmark 11949 A 34758 34758
107 Denmark 11950 C 34757 34757
108 Denmark 11951 A 34754 34754
109 Denmark 11952 A 34754 34754
110 Denmark 11953 T C 34754 34747 Asn3896Asn
111 Denmark 11954 G 34754 34754
112 Denmark 11955 A 34754 34754
113 Denmark 11956 C T 34754 34348 Asp3897Asp
114 Denmark 11957 A 34754 34753
115 Denmark 11958 T 34754 34754
116 Denmark 11959 T 34754 34754
117 Denmark 11960 C 34754 34754
118 Denmark 11961 T 34754 34754
119 Denmark 11962 C T 34754 34687 Leu3899Leu
120 Denmark 11963 T 34754 34753
121 Denmark 11964 T 34754 34754
122 Denmark 11965 A G 34754 34752 Leu3900Leu
123 Denmark 11966 G T 34754 34753 Ala3901Ser
124 Denmark 11967 C T 34754 34751 Ala3901Val
125 Denmark 11968 T 34754 34754
126 Denmark 11969 A 34754 34754
127 Denmark 11970 A 34754 34753
128 Denmark 11971 A 34754 34754
129 Denmark 11972 G 34754 34754
130 Denmark 11973 A 34754 34754
131 Denmark 11974 T C 34754 34751 Asp3903Asp
132 Denmark 11975 A 34754 34754
133 Denmark 11976 C 34754 34754
134 Denmark 11977 T 34754 34754
135 Denmark 11978 A 34754 34754
136 Denmark 11979 C 34754 34754
137 Denmark 11980 T 34754 34754
138 Denmark 11981 G 34754 34754
139 Denmark 11982 A 34754 34754
140 Denmark 11983 A 34754 34754
141 Denmark 11984 G 34754 34754
142 Denmark 11985 C 34754 34754
143 Denmark 11986 C T,A 34754 34746 Ala3907Ala-p.Ala3907Ala
144 Denmark 11987 T 34754 34754
145 Denmark 11988 T 34754 34754
146 Denmark 11989 T 34754 34754
147 Denmark 11990 G 34754 34725
148 Denmark 11991 A G 34754 34418 Glu3909Gly
149 Denmark 11992 A 34754 34754
150 Denmark 11993 A 34754 34754
151 Denmark 11994 A 34754 34754
152 Denmark 11995 A 34754 34754
153 Denmark 11996 A G 34754 34753 Met3911Val
154 Denmark 11997 T 34754 34754
155 Denmark 11998 G 34754 34754
156 Denmark 11999 G 34754 34752
157 Denmark 12000 T 34754 34754
158 Denmark 12001 T 34754 34754
159 Denmark 12002 T 34754 34754
160 Denmark 12003 C T 34754 34752 Ser3913Leu
161 Denmark 12004 A 34754 34754
162 Denmark 12005 C T 34754 34753 Leu3914Leu
163 Denmark 12006 T 34754 34754
164 Denmark 12007 A 34754 34754
165 Denmark 12008 C T 34754 34749 Leu3915Phe
166 Denmark 12009 T 34754 34754
167 Denmark 12010 T C 34754 34683 Leu3915Leu
168 Denmark 12011 T 34754 34754
169 Denmark 12012 C T 34754 34753 Ser3916Phe
170 Denmark 12013 T A 34754 34752 Ser3916Ser
171 Denmark 12014 G A 34754 34742 Val3917Ile
172 Denmark 12015 T G 34754 34746 Val3917Gly
173 Denmark 12016 T 34754 34754
174 Denmark 12017 T 34754 34754
175 Denmark 12018 T 34754 34754
176 Denmark 12019 G A 34754 34473 Leu3918Leu
177 Denmark 12020 C T 34754 34753 Leu3919Phe
178 Denmark 12021 T 34754 34754
179 Denmark 12022 T 34754 34754
180 Denmark 12023 T 34755 34755
181 Denmark 12024 C 34755 34755
182 Denmark 12025 C T 34755 34387 Ser3920Ser
183 Denmark 12026 A 34755 34755
184 Denmark 12027 T 34755 34755
185 Denmark 12028 G 34755 34755
186 Denmark 12029 C 34755 34754
187 Denmark 12030 A 34755 34755
188 Denmark 12031 G A 34755 34743 Gln3922Gln
189 Denmark 12032 G T 34755 34753 Gly3923Cys
190 Denmark 12033 G 34755 34755
191 Denmark 12034 T 34755 34755
192 Denmark 12035 G 34755 34755
193 Denmark 12036 C T 34755 34754 Ala3924Val
194 Denmark 12037 T 34755 34755
195 Denmark 12038 G 34755 34755
196 Denmark 12039 T 34755 34755
197 Denmark 12040 A G 34755 34754 Val3925Val
198 Denmark 12041 G 34755 34755
199 Denmark 12042 A C 34755 34754 Asp3926Ala
200 Denmark 12043 C T 34755 34715 Asp3926Asp
201 Denmark 12044 A 34755 34755
202 Denmark 12045 T 34755 34755
203 Denmark 12046 A 34755 34755
204 Denmark 12047 A 34755 34755
205 Denmark 12048 A 34755 34755
206 Denmark 12049 C T 34755 34745 Asn3928Asn
207 Denmark 12050 A 34755 34755
208 Denmark 12051 A 34755 34755
209 Denmark 12052 G T 34755 34747 Lys3929Asn
210 Denmark 12053 C T 34755 34737 Leu3930Phe
211 Denmark 12054 T 34755 34755
212 Denmark 12055 T 34755 34755
213 Denmark 12056 T A 34755 34754 Cys3931Ser
214 Denmark 12057 G 34755 34755
215 Denmark 12058 T C 34755 34752 Cys3931Cys
216 Denmark 12059 G 34755 34755
217 Denmark 12060 A 34755 34755
218 Denmark 12061 A G 34755 34753 Glu3932Glu
219 Denmark 12062 G 34755 34755
220 Denmark 12063 A 34755 34755
221 Denmark 12064 A 34755 34755
222 Denmark 12065 A 34755 34755
223 Denmark 12066 T 34755 34755
224 Denmark 12067 G C,T 34755 34717 Met3934Ile-p.Met3934Ile
225 Denmark 12068 C T 34755 34712 Leu3935Leu
226 Denmark 12069 T 34755 34755
227 Denmark 12070 G T,C,A 34755 34675 Leu3935Leu-p.Leu3935Leu
228 Denmark 12071 G T 34755 34754 Asp3936Tyr
229 Denmark 12072 A 34755 34755
230 Denmark 12073 C T 34755 34711 Asp3936Asp
231 Denmark 12074 A 34754 34753
232 Denmark 12075 A G 34754 34738 Asn3937Ser
233 Denmark 12076 C T 34754 34612 Asn3937Asn
234 Denmark 12077 A 34754 34753
235 Denmark 12078 G 34754 34753
236 Denmark 12079 G 34754 34753
237 Denmark 12080 G 34754 34753
238 Denmark 12081 C T 34754 34712 Ala3939Val
239 Denmark 12082 A 34754 34754
240 Denmark 12083 A G 34754 34753 Thr3940Ala
241 Denmark 12084 C T 34754 34743 Thr3940Ile
242 Denmark 12085 C T 34754 34746 Thr3940Thr
243 Denmark 12086 T 34754 34754
244 Denmark 12087 T 34754 34754
245 Denmark 12088 A 34754 34754
246 Denmark 12089 C 34754 34754
247 Denmark 12090 A 34754 34754
248 Denmark 12091 A 34747 34747