National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15     2                              
E   15           1                        
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                   2                
M   12               1                    
N   9                       2            
Q   18                                    
R   6                                    
S   30                   1         2      
T   12                               1    
V   27               1                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Czech_Republic 11843 T 601 601
1 Czech_Republic 11844 C 601 601
2 Czech_Republic 11845 T 601 601
3 Czech_Republic 11846 A 601 601
4 Czech_Republic 11847 A 601 601
5 Czech_Republic 11848 A 601 601
6 Czech_Republic 11849 A 601 601
7 Czech_Republic 11850 T 601 601
8 Czech_Republic 11851 G 601 601
9 Czech_Republic 11852 T 601 601
10 Czech_Republic 11853 C 601 601
11 Czech_Republic 11854 A 601 601
12 Czech_Republic 11855 G 601 601
13 Czech_Republic 11856 A 601 601
14 Czech_Republic 11857 T 601 601
15 Czech_Republic 11858 G 601 601
16 Czech_Republic 11859 T 601 601
17 Czech_Republic 11860 A 601 601
18 Czech_Republic 11861 A 601 601
19 Czech_Republic 11862 A 601 601
20 Czech_Republic 11863 G 601 601
21 Czech_Republic 11864 T 601 601
22 Czech_Republic 11865 G 601 601
23 Czech_Republic 11866 C 601 601
24 Czech_Republic 11867 A 601 601
25 Czech_Republic 11868 C 601 601
26 Czech_Republic 11869 A 601 601
27 Czech_Republic 11870 T 601 601
28 Czech_Republic 11871 C 601 601
29 Czech_Republic 11872 A 601 601
30 Czech_Republic 11873 G 601 601
31 Czech_Republic 11874 T 601 601
32 Czech_Republic 11875 A 601 601
33 Czech_Republic 11876 G 601 601
34 Czech_Republic 11877 T 601 601
35 Czech_Republic 11878 C 601 601
36 Czech_Republic 11879 T 601 601
37 Czech_Republic 11880 T 601 601
38 Czech_Republic 11881 A 601 601
39 Czech_Republic 11882 C 601 601
40 Czech_Republic 11883 T 601 601
41 Czech_Republic 11884 C 601 601
42 Czech_Republic 11885 T 601 601
43 Czech_Republic 11886 C 601 601
44 Czech_Republic 11887 A 601 601
45 Czech_Republic 11888 G 601 601
46 Czech_Republic 11889 T 601 601
47 Czech_Republic 11890 T 601 601
48 Czech_Republic 11891 T 601 601
49 Czech_Republic 11892 T 601 601
50 Czech_Republic 11893 G 601 601
51 Czech_Republic 11894 C 601 601
52 Czech_Republic 11895 A 601 601
53 Czech_Republic 11896 A 601 601
54 Czech_Republic 11897 C 601 601
55 Czech_Republic 11898 A 601 601
56 Czech_Republic 11899 A 601 601
57 Czech_Republic 11900 C 601 601
58 Czech_Republic 11901 T 601 601
59 Czech_Republic 11902 C 601 601
60 Czech_Republic 11903 A 601 601
61 Czech_Republic 11904 G 601 601
62 Czech_Republic 11905 A 601 601
63 Czech_Republic 11906 G 601 601
64 Czech_Republic 11907 T 601 601
65 Czech_Republic 11908 A 601 601
66 Czech_Republic 11909 G 601 601
67 Czech_Republic 11910 A 601 601
68 Czech_Republic 11911 A 601 601
69 Czech_Republic 11912 T 601 601
70 Czech_Republic 11913 C 601 601
71 Czech_Republic 11914 A G 601 592 Ser3883Ser
72 Czech_Republic 11915 T 601 601
73 Czech_Republic 11916 C T 601 598 Ser3884Leu
74 Czech_Republic 11917 A 601 601
75 Czech_Republic 11918 T 601 601
76 Czech_Republic 11919 C 601 601
77 Czech_Republic 11920 T 601 601
78 Czech_Republic 11921 A 601 601
79 Czech_Republic 11922 A 601 601
80 Czech_Republic 11923 A 601 601
81 Czech_Republic 11924 T 601 601
82 Czech_Republic 11925 T 601 601
83 Czech_Republic 11926 G 601 601
84 Czech_Republic 11927 T 601 601
85 Czech_Republic 11928 G 601 601
86 Czech_Republic 11929 G 601 601
87 Czech_Republic 11930 G 601 601
88 Czech_Republic 11931 C 601 601
89 Czech_Republic 11932 T 601 601
90 Czech_Republic 11933 C 601 601
91 Czech_Republic 11934 A 601 601
92 Czech_Republic 11935 A 601 601
93 Czech_Republic 11936 T 601 601
94 Czech_Republic 11937 G 601 601
95 Czech_Republic 11938 T 601 601
96 Czech_Republic 11939 G 601 601
97 Czech_Republic 11940 T 601 601
98 Czech_Republic 11941 C 601 601
99 Czech_Republic 11942 C 601 601
100 Czech_Republic 11943 A 601 601
101 Czech_Republic 11944 G 601 601
102 Czech_Republic 11945 T 601 601
103 Czech_Republic 11946 T 601 601
104 Czech_Republic 11947 A 601 601
105 Czech_Republic 11948 C 601 601
106 Czech_Republic 11949 A 601 601
107 Czech_Republic 11950 C 601 601
108 Czech_Republic 11951 A 601 601
109 Czech_Republic 11952 A 601 601
110 Czech_Republic 11953 T 601 601
111 Czech_Republic 11954 G 601 601
112 Czech_Republic 11955 A 601 601
113 Czech_Republic 11956 C T 601 597 Asp3897Asp
114 Czech_Republic 11957 A 601 601
115 Czech_Republic 11958 T 601 601
116 Czech_Republic 11959 T 601 601
117 Czech_Republic 11960 C 601 601
118 Czech_Republic 11961 T 601 601
119 Czech_Republic 11962 C T 601 600 Leu3899Leu
120 Czech_Republic 11963 T 601 601
121 Czech_Republic 11964 T 601 601
122 Czech_Republic 11965 A 601 601
123 Czech_Republic 11966 G 601 601
124 Czech_Republic 11967 C 601 601
125 Czech_Republic 11968 T 601 601
126 Czech_Republic 11969 A 601 601
127 Czech_Republic 11970 A 601 601
128 Czech_Republic 11971 A 601 601
129 Czech_Republic 11972 G 601 601
130 Czech_Republic 11973 A 601 601
131 Czech_Republic 11974 T 601 601
132 Czech_Republic 11975 A 601 601
133 Czech_Republic 11976 C 601 601
134 Czech_Republic 11977 T 601 601
135 Czech_Republic 11978 A 601 601
136 Czech_Republic 11979 C 601 601
137 Czech_Republic 11980 T 601 601
138 Czech_Republic 11981 G 601 601
139 Czech_Republic 11982 A 601 601
140 Czech_Republic 11983 A 601 601
141 Czech_Republic 11984 G 601 601
142 Czech_Republic 11985 C 601 601
143 Czech_Republic 11986 C 601 601
144 Czech_Republic 11987 T 601 601
145 Czech_Republic 11988 T 601 601
146 Czech_Republic 11989 T 601 601
147 Czech_Republic 11990 G 601 601
148 Czech_Republic 11991 A G 601 600 Glu3909Gly
149 Czech_Republic 11992 A 601 601
150 Czech_Republic 11993 A 601 601
151 Czech_Republic 11994 A 601 601
152 Czech_Republic 11995 A 601 601
153 Czech_Republic 11996 A 601 601
154 Czech_Republic 11997 T 601 601
155 Czech_Republic 11998 G 601 601
156 Czech_Republic 11999 G 601 601
157 Czech_Republic 12000 T 601 601
158 Czech_Republic 12001 T 602 602
159 Czech_Republic 12002 T 602 602
160 Czech_Republic 12003 C 602 602
161 Czech_Republic 12004 A 602 602
162 Czech_Republic 12005 C 602 602
163 Czech_Republic 12006 T 602 602
164 Czech_Republic 12007 A 602 602
165 Czech_Republic 12008 C 602 602
166 Czech_Republic 12009 T 602 602
167 Czech_Republic 12010 T 602 602
168 Czech_Republic 12011 T 602 602
169 Czech_Republic 12012 C 602 602
170 Czech_Republic 12013 T 602 602
171 Czech_Republic 12014 G A 602 601 Val3917Ile
172 Czech_Republic 12015 T 602 602
173 Czech_Republic 12016 T 602 602
174 Czech_Republic 12017 T 602 602
175 Czech_Republic 12018 T 602 602
176 Czech_Republic 12019 G 602 602
177 Czech_Republic 12020 C 602 602
178 Czech_Republic 12021 T 602 602
179 Czech_Republic 12022 T 602 602
180 Czech_Republic 12023 T 602 602
181 Czech_Republic 12024 C 602 602
182 Czech_Republic 12025 C T 602 599 Ser3920Ser
183 Czech_Republic 12026 A 602 602
184 Czech_Republic 12027 T 602 602
185 Czech_Republic 12028 G 602 601
186 Czech_Republic 12029 C 602 601
187 Czech_Republic 12030 A 602 602
188 Czech_Republic 12031 G 602 602
189 Czech_Republic 12032 G 602 602
190 Czech_Republic 12033 G 602 602
191 Czech_Republic 12034 T 602 602
192 Czech_Republic 12035 G 602 602
193 Czech_Republic 12036 C 602 602
194 Czech_Republic 12037 T 602 602
195 Czech_Republic 12038 G 602 602
196 Czech_Republic 12039 T 602 602
197 Czech_Republic 12040 A 602 602
198 Czech_Republic 12041 G 602 602
199 Czech_Republic 12042 A 602 602
200 Czech_Republic 12043 C T 602 600 Asp3926Asp
201 Czech_Republic 12044 A 602 602
202 Czech_Republic 12045 T 602 602
203 Czech_Republic 12046 A 602 602
204 Czech_Republic 12047 A 602 602
205 Czech_Republic 12048 A 602 602
206 Czech_Republic 12049 C T 602 584 Asn3928Asn
207 Czech_Republic 12050 A 602 602
208 Czech_Republic 12051 A 602 602
209 Czech_Republic 12052 G 602 602
210 Czech_Republic 12053 C 602 602
211 Czech_Republic 12054 T 602 602
212 Czech_Republic 12055 T 602 602
213 Czech_Republic 12056 T 602 602
214 Czech_Republic 12057 G 602 602
215 Czech_Republic 12058 T 602 602
216 Czech_Republic 12059 G 602 602
217 Czech_Republic 12060 A 602 602
218 Czech_Republic 12061 A 602 602
219 Czech_Republic 12062 G 602 602
220 Czech_Republic 12063 A 602 602
221 Czech_Republic 12064 A 602 602
222 Czech_Republic 12065 A 602 602
223 Czech_Republic 12066 T 602 602
224 Czech_Republic 12067 G A 602 601 Met3934Ile
225 Czech_Republic 12068 C T 602 601 Leu3935Leu
226 Czech_Republic 12069 T 602 602
227 Czech_Republic 12070 G 602 601
228 Czech_Republic 12071 G 602 601
229 Czech_Republic 12072 A 602 601
230 Czech_Republic 12073 C 602 601
231 Czech_Republic 12074 A 602 601
232 Czech_Republic 12075 A 602 601
233 Czech_Republic 12076 C T 602 600 Asn3937Asn
234 Czech_Republic 12077 A 602 601
235 Czech_Republic 12078 G 602 601
236 Czech_Republic 12079 G 602 601
237 Czech_Republic 12080 G 602 602
238 Czech_Republic 12081 C 602 602
239 Czech_Republic 12082 A 602 602
240 Czech_Republic 12083 A 602 602
241 Czech_Republic 12084 C 602 602
242 Czech_Republic 12085 C T 602 601 Thr3940Thr
243 Czech_Republic 12086 T 602 602
244 Czech_Republic 12087 T 602 602
245 Czech_Republic 12088 A 602 602
246 Czech_Republic 12089 C 602 602
247 Czech_Republic 12090 A 602 602
248 Czech_Republic 12091 A 602 602