National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cyprus 11843 T 8 8
1 Cyprus 11844 C 8 8
2 Cyprus 11845 T 8 8
3 Cyprus 11846 A 8 8
4 Cyprus 11847 A 8 8
5 Cyprus 11848 A 8 8
6 Cyprus 11849 A 8 8
7 Cyprus 11850 T 8 8
8 Cyprus 11851 G 8 8
9 Cyprus 11852 T 8 8
10 Cyprus 11853 C 8 8
11 Cyprus 11854 A 8 8
12 Cyprus 11855 G 8 8
13 Cyprus 11856 A 8 8
14 Cyprus 11857 T 8 8
15 Cyprus 11858 G 8 8
16 Cyprus 11859 T 8 8
17 Cyprus 11860 A 8 8
18 Cyprus 11861 A 8 8
19 Cyprus 11862 A 8 8
20 Cyprus 11863 G 8 8
21 Cyprus 11864 T 8 8
22 Cyprus 11865 G 8 8
23 Cyprus 11866 C 8 8
24 Cyprus 11867 A 8 8
25 Cyprus 11868 C 8 8
26 Cyprus 11869 A 8 8
27 Cyprus 11870 T 8 8
28 Cyprus 11871 C 8 8
29 Cyprus 11872 A 8 8
30 Cyprus 11873 G 8 8
31 Cyprus 11874 T 8 8
32 Cyprus 11875 A 8 8
33 Cyprus 11876 G 8 8
34 Cyprus 11877 T 8 8
35 Cyprus 11878 C 8 8
36 Cyprus 11879 T 8 8
37 Cyprus 11880 T 8 8
38 Cyprus 11881 A 8 8
39 Cyprus 11882 C 8 8
40 Cyprus 11883 T 8 8
41 Cyprus 11884 C 8 8
42 Cyprus 11885 T 8 8
43 Cyprus 11886 C 8 8
44 Cyprus 11887 A 8 8
45 Cyprus 11888 G 8 8
46 Cyprus 11889 T 8 8
47 Cyprus 11890 T 8 8
48 Cyprus 11891 T 8 8
49 Cyprus 11892 T 8 8
50 Cyprus 11893 G 8 8
51 Cyprus 11894 C 8 8
52 Cyprus 11895 A 8 8
53 Cyprus 11896 A 8 8
54 Cyprus 11897 C 8 8
55 Cyprus 11898 A 8 8
56 Cyprus 11899 A 8 8
57 Cyprus 11900 C 8 8
58 Cyprus 11901 T 8 8
59 Cyprus 11902 C 8 8
60 Cyprus 11903 A 8 8
61 Cyprus 11904 G 8 8
62 Cyprus 11905 A 8 8
63 Cyprus 11906 G 8 8
64 Cyprus 11907 T 8 8
65 Cyprus 11908 A 8 8
66 Cyprus 11909 G 8 8
67 Cyprus 11910 A 8 8
68 Cyprus 11911 A 8 8
69 Cyprus 11912 T 8 8
70 Cyprus 11913 C 8 8
71 Cyprus 11914 A 8 8
72 Cyprus 11915 T 8 8
73 Cyprus 11916 C 8 8
74 Cyprus 11917 A 8 8
75 Cyprus 11918 T 8 8
76 Cyprus 11919 C 8 8
77 Cyprus 11920 T 8 8
78 Cyprus 11921 A 8 8
79 Cyprus 11922 A 8 8
80 Cyprus 11923 A 8 8
81 Cyprus 11924 T 8 8
82 Cyprus 11925 T 8 8
83 Cyprus 11926 G 8 8
84 Cyprus 11927 T 8 8
85 Cyprus 11928 G 8 8
86 Cyprus 11929 G 8 8
87 Cyprus 11930 G 8 8
88 Cyprus 11931 C 8 8
89 Cyprus 11932 T 8 8
90 Cyprus 11933 C 8 8
91 Cyprus 11934 A 8 8
92 Cyprus 11935 A 8 8
93 Cyprus 11936 T 8 8
94 Cyprus 11937 G 8 8
95 Cyprus 11938 T 8 8
96 Cyprus 11939 G 8 8
97 Cyprus 11940 T 8 8
98 Cyprus 11941 C 8 8
99 Cyprus 11942 C 8 8
100 Cyprus 11943 A 8 8
101 Cyprus 11944 G 8 8
102 Cyprus 11945 T 8 8
103 Cyprus 11946 T 8 8
104 Cyprus 11947 A 8 8
105 Cyprus 11948 C 8 8
106 Cyprus 11949 A 8 8
107 Cyprus 11950 C 8 8
108 Cyprus 11951 A 8 8
109 Cyprus 11952 A 8 8
110 Cyprus 11953 T 8 8
111 Cyprus 11954 G 8 8
112 Cyprus 11955 A 8 8
113 Cyprus 11956 C 8 8
114 Cyprus 11957 A 8 8
115 Cyprus 11958 T 8 8
116 Cyprus 11959 T 8 8
117 Cyprus 11960 C 8 8
118 Cyprus 11961 T 8 8
119 Cyprus 11962 C 8 8
120 Cyprus 11963 T 8 8
121 Cyprus 11964 T 8 8
122 Cyprus 11965 A 8 8
123 Cyprus 11966 G 8 8
124 Cyprus 11967 C 8 8
125 Cyprus 11968 T 8 8
126 Cyprus 11969 A 8 8
127 Cyprus 11970 A 8 8
128 Cyprus 11971 A 8 8
129 Cyprus 11972 G 8 8
130 Cyprus 11973 A 8 8
131 Cyprus 11974 T 8 8
132 Cyprus 11975 A 8 8
133 Cyprus 11976 C 8 8
134 Cyprus 11977 T 8 8
135 Cyprus 11978 A 8 8
136 Cyprus 11979 C 8 8
137 Cyprus 11980 T 8 8
138 Cyprus 11981 G 8 8
139 Cyprus 11982 A 8 8
140 Cyprus 11983 A 8 8
141 Cyprus 11984 G 8 8
142 Cyprus 11985 C 8 8
143 Cyprus 11986 C 8 8
144 Cyprus 11987 T 8 8
145 Cyprus 11988 T 8 8
146 Cyprus 11989 T 8 8
147 Cyprus 11990 G 8 8
148 Cyprus 11991 A 8 8
149 Cyprus 11992 A 8 8
150 Cyprus 11993 A 8 8
151 Cyprus 11994 A 8 8
152 Cyprus 11995 A 8 8
153 Cyprus 11996 A 8 8
154 Cyprus 11997 T 8 8
155 Cyprus 11998 G 8 8
156 Cyprus 11999 G 8 8
157 Cyprus 12000 T 8 8
158 Cyprus 12001 T 8 8
159 Cyprus 12002 T 8 8
160 Cyprus 12003 C 8 8
161 Cyprus 12004 A 8 8
162 Cyprus 12005 C 8 8
163 Cyprus 12006 T 8 8
164 Cyprus 12007 A 8 8
165 Cyprus 12008 C 8 8
166 Cyprus 12009 T 8 8
167 Cyprus 12010 T 8 8
168 Cyprus 12011 T 8 8
169 Cyprus 12012 C 8 8
170 Cyprus 12013 T 8 8
171 Cyprus 12014 G 8 8
172 Cyprus 12015 T 8 8
173 Cyprus 12016 T 8 8
174 Cyprus 12017 T 8 8
175 Cyprus 12018 T 8 8
176 Cyprus 12019 G 8 8
177 Cyprus 12020 C 8 8
178 Cyprus 12021 T 8 8
179 Cyprus 12022 T 8 8
180 Cyprus 12023 T 8 8
181 Cyprus 12024 C 8 8
182 Cyprus 12025 C 8 8
183 Cyprus 12026 A 8 8
184 Cyprus 12027 T 8 8
185 Cyprus 12028 G 8 8
186 Cyprus 12029 C 8 8
187 Cyprus 12030 A 8 8
188 Cyprus 12031 G 8 8
189 Cyprus 12032 G 8 8
190 Cyprus 12033 G 8 8
191 Cyprus 12034 T 8 8
192 Cyprus 12035 G 8 8
193 Cyprus 12036 C 8 8
194 Cyprus 12037 T 8 8
195 Cyprus 12038 G 8 8
196 Cyprus 12039 T 8 8
197 Cyprus 12040 A 8 8
198 Cyprus 12041 G 8 8
199 Cyprus 12042 A 8 8
200 Cyprus 12043 C 8 8
201 Cyprus 12044 A 8 8
202 Cyprus 12045 T 8 8
203 Cyprus 12046 A 8 8
204 Cyprus 12047 A 8 8
205 Cyprus 12048 A 8 8
206 Cyprus 12049 C 8 8
207 Cyprus 12050 A 8 8
208 Cyprus 12051 A 8 8
209 Cyprus 12052 G 8 8
210 Cyprus 12053 C 8 8
211 Cyprus 12054 T 8 8
212 Cyprus 12055 T 8 8
213 Cyprus 12056 T 8 8
214 Cyprus 12057 G 8 8
215 Cyprus 12058 T 8 8
216 Cyprus 12059 G 8 8
217 Cyprus 12060 A 8 8
218 Cyprus 12061 A 8 8
219 Cyprus 12062 G 8 8
220 Cyprus 12063 A 8 8
221 Cyprus 12064 A 8 8
222 Cyprus 12065 A 8 8
223 Cyprus 12066 T 8 8
224 Cyprus 12067 G 8 8
225 Cyprus 12068 C 8 8
226 Cyprus 12069 T 8 8
227 Cyprus 12070 G 8 8
228 Cyprus 12071 G 8 8
229 Cyprus 12072 A 8 8
230 Cyprus 12073 C 8 8
231 Cyprus 12074 A 8 8
232 Cyprus 12075 A 8 8
233 Cyprus 12076 C 8 8
234 Cyprus 12077 A 8 8
235 Cyprus 12078 G 8 8
236 Cyprus 12079 G 8 8
237 Cyprus 12080 G 8 8
238 Cyprus 12081 C 8 8
239 Cyprus 12082 A 8 8
240 Cyprus 12083 A 8 8
241 Cyprus 12084 C 8 8
242 Cyprus 12085 C 8 8
243 Cyprus 12086 T 8 8
244 Cyprus 12087 T 8 8
245 Cyprus 12088 A 8 8
246 Cyprus 12089 C 8 8
247 Cyprus 12090 A 8 8
248 Cyprus 12091 A 8 8