National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cuba 11843 T 2 2
1 Cuba 11844 C 2 2
2 Cuba 11845 T 2 2
3 Cuba 11846 A 2 2
4 Cuba 11847 A 2 2
5 Cuba 11848 A 2 2
6 Cuba 11849 A 2 2
7 Cuba 11850 T 2 2
8 Cuba 11851 G 2 2
9 Cuba 11852 T 2 2
10 Cuba 11853 C 2 2
11 Cuba 11854 A 2 2
12 Cuba 11855 G 2 2
13 Cuba 11856 A 2 2
14 Cuba 11857 T 2 2
15 Cuba 11858 G 2 2
16 Cuba 11859 T 2 2
17 Cuba 11860 A 2 2
18 Cuba 11861 A 2 2
19 Cuba 11862 A 2 2
20 Cuba 11863 G 2 2
21 Cuba 11864 T 2 2
22 Cuba 11865 G 2 2
23 Cuba 11866 C 2 2
24 Cuba 11867 A 2 2
25 Cuba 11868 C 2 2
26 Cuba 11869 A 2 2
27 Cuba 11870 T 2 2
28 Cuba 11871 C 2 2
29 Cuba 11872 A 2 2
30 Cuba 11873 G 2 2
31 Cuba 11874 T 2 2
32 Cuba 11875 A 2 2
33 Cuba 11876 G 2 2
34 Cuba 11877 T 2 2
35 Cuba 11878 C 2 2
36 Cuba 11879 T 2 2
37 Cuba 11880 T 2 2
38 Cuba 11881 A 2 2
39 Cuba 11882 C 2 2
40 Cuba 11883 T 2 2
41 Cuba 11884 C 2 2
42 Cuba 11885 T 2 2
43 Cuba 11886 C 2 2
44 Cuba 11887 A 2 2
45 Cuba 11888 G 2 2
46 Cuba 11889 T 2 2
47 Cuba 11890 T 2 2
48 Cuba 11891 T 2 2
49 Cuba 11892 T 2 2
50 Cuba 11893 G 2 2
51 Cuba 11894 C 2 2
52 Cuba 11895 A 2 2
53 Cuba 11896 A 2 2
54 Cuba 11897 C 2 2
55 Cuba 11898 A 2 2
56 Cuba 11899 A 2 2
57 Cuba 11900 C 2 2
58 Cuba 11901 T 2 2
59 Cuba 11902 C 2 2
60 Cuba 11903 A 2 2
61 Cuba 11904 G 2 2
62 Cuba 11905 A 2 2
63 Cuba 11906 G 2 2
64 Cuba 11907 T 2 2
65 Cuba 11908 A 2 2
66 Cuba 11909 G 2 2
67 Cuba 11910 A 2 2
68 Cuba 11911 A 2 2
69 Cuba 11912 T 2 2
70 Cuba 11913 C 2 2
71 Cuba 11914 A 2 2
72 Cuba 11915 T 2 2
73 Cuba 11916 C 2 2
74 Cuba 11917 A 2 2
75 Cuba 11918 T 2 2
76 Cuba 11919 C 2 2
77 Cuba 11920 T 2 2
78 Cuba 11921 A 2 2
79 Cuba 11922 A 2 2
80 Cuba 11923 A 2 2
81 Cuba 11924 T 2 2
82 Cuba 11925 T 2 2
83 Cuba 11926 G 2 2
84 Cuba 11927 T 2 2
85 Cuba 11928 G 2 2
86 Cuba 11929 G 2 2
87 Cuba 11930 G 2 2
88 Cuba 11931 C 2 2
89 Cuba 11932 T 2 2
90 Cuba 11933 C 2 2
91 Cuba 11934 A 2 2
92 Cuba 11935 A 2 2
93 Cuba 11936 T 2 2
94 Cuba 11937 G 2 2
95 Cuba 11938 T 2 2
96 Cuba 11939 G 2 2
97 Cuba 11940 T 2 2
98 Cuba 11941 C 2 2
99 Cuba 11942 C 2 2
100 Cuba 11943 A 2 2
101 Cuba 11944 G 2 2
102 Cuba 11945 T 2 2
103 Cuba 11946 T 2 2
104 Cuba 11947 A 2 2
105 Cuba 11948 C 2 2
106 Cuba 11949 A 2 2
107 Cuba 11950 C 2 2
108 Cuba 11951 A 2 2
109 Cuba 11952 A 2 2
110 Cuba 11953 T 2 2
111 Cuba 11954 G 2 2
112 Cuba 11955 A 2 2
113 Cuba 11956 C 2 2
114 Cuba 11957 A 2 2
115 Cuba 11958 T 2 2
116 Cuba 11959 T 2 2
117 Cuba 11960 C 2 2
118 Cuba 11961 T 2 2
119 Cuba 11962 C 2 2
120 Cuba 11963 T 2 2
121 Cuba 11964 T 2 2
122 Cuba 11965 A 2 2
123 Cuba 11966 G 2 2
124 Cuba 11967 C 2 2
125 Cuba 11968 T 2 2
126 Cuba 11969 A 2 2
127 Cuba 11970 A 2 2
128 Cuba 11971 A 2 2
129 Cuba 11972 G 2 2
130 Cuba 11973 A 2 2
131 Cuba 11974 T 2 2
132 Cuba 11975 A 2 2
133 Cuba 11976 C 2 2
134 Cuba 11977 T 2 2
135 Cuba 11978 A 2 2
136 Cuba 11979 C 2 2
137 Cuba 11980 T 2 2
138 Cuba 11981 G 2 2
139 Cuba 11982 A 2 2
140 Cuba 11983 A 2 2
141 Cuba 11984 G 2 2
142 Cuba 11985 C 2 2
143 Cuba 11986 C 2 2
144 Cuba 11987 T 2 2
145 Cuba 11988 T 2 2
146 Cuba 11989 T 2 2
147 Cuba 11990 G 2 2
148 Cuba 11991 A 2 2
149 Cuba 11992 A 2 2
150 Cuba 11993 A 2 2
151 Cuba 11994 A 2 2
152 Cuba 11995 A 2 2
153 Cuba 11996 A 2 2
154 Cuba 11997 T 2 2
155 Cuba 11998 G 2 2
156 Cuba 11999 G 2 2
157 Cuba 12000 T 2 2
158 Cuba 12001 T 2 2
159 Cuba 12002 T 2 2
160 Cuba 12003 C 2 2
161 Cuba 12004 A 2 2
162 Cuba 12005 C 2 2
163 Cuba 12006 T 2 2
164 Cuba 12007 A 2 2
165 Cuba 12008 C 2 2
166 Cuba 12009 T 2 2
167 Cuba 12010 T 2 2
168 Cuba 12011 T 2 2
169 Cuba 12012 C 2 2
170 Cuba 12013 T 2 2
171 Cuba 12014 G 2 2
172 Cuba 12015 T 2 2
173 Cuba 12016 T 2 2
174 Cuba 12017 T 2 2
175 Cuba 12018 T 2 2
176 Cuba 12019 G 2 2
177 Cuba 12020 C 2 2
178 Cuba 12021 T 2 2
179 Cuba 12022 T 2 2
180 Cuba 12023 T 2 2
181 Cuba 12024 C 2 2
182 Cuba 12025 C 2 2
183 Cuba 12026 A 2 2
184 Cuba 12027 T 2 2
185 Cuba 12028 G 2 2
186 Cuba 12029 C 2 2
187 Cuba 12030 A 2 2
188 Cuba 12031 G 2 2
189 Cuba 12032 G 2 2
190 Cuba 12033 G 2 2
191 Cuba 12034 T 2 2
192 Cuba 12035 G 2 2
193 Cuba 12036 C 2 2
194 Cuba 12037 T 2 2
195 Cuba 12038 G 2 2
196 Cuba 12039 T 2 2
197 Cuba 12040 A 2 2
198 Cuba 12041 G 2 2
199 Cuba 12042 A 2 2
200 Cuba 12043 C 2 2
201 Cuba 12044 A 2 2
202 Cuba 12045 T 2 2
203 Cuba 12046 A 2 2
204 Cuba 12047 A 2 2
205 Cuba 12048 A 2 2
206 Cuba 12049 C 2 2
207 Cuba 12050 A 2 2
208 Cuba 12051 A 2 2
209 Cuba 12052 G 2 2
210 Cuba 12053 C 2 2
211 Cuba 12054 T 2 2
212 Cuba 12055 T 2 2
213 Cuba 12056 T 2 2
214 Cuba 12057 G 2 2
215 Cuba 12058 T 2 2
216 Cuba 12059 G 2 2
217 Cuba 12060 A 2 2
218 Cuba 12061 A 2 2
219 Cuba 12062 G 2 2
220 Cuba 12063 A 2 2
221 Cuba 12064 A 2 2
222 Cuba 12065 A 2 2
223 Cuba 12066 T 2 2
224 Cuba 12067 G 2 2
225 Cuba 12068 C 2 2
226 Cuba 12069 T 2 2
227 Cuba 12070 G 2 2
228 Cuba 12071 G 2 2
229 Cuba 12072 A 2 2
230 Cuba 12073 C 2 2
231 Cuba 12074 A 2 2
232 Cuba 12075 A 2 2
233 Cuba 12076 C 2 2
234 Cuba 12077 A 2 2
235 Cuba 12078 G 2 2
236 Cuba 12079 G 2 2
237 Cuba 12080 G 2 2
238 Cuba 12081 C 2 2
239 Cuba 12082 A 2 2
240 Cuba 12083 A 2 2
241 Cuba 12084 C 2 2
242 Cuba 12085 C 2 2
243 Cuba 12086 T 2 2
244 Cuba 12087 T 2 2
245 Cuba 12088 A 2 2
246 Cuba 12089 C 2 2
247 Cuba 12090 A 2 2
248 Cuba 12091 A 2 2