National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15           1                        
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Croatia 11843 T 50 50
1 Croatia 11844 C 50 50
2 Croatia 11845 T 50 50
3 Croatia 11846 A 50 50
4 Croatia 11847 A 50 50
5 Croatia 11848 A 50 50
6 Croatia 11849 A 50 50
7 Croatia 11850 T 50 50
8 Croatia 11851 G 50 50
9 Croatia 11852 T 50 50
10 Croatia 11853 C 50 50
11 Croatia 11854 A 50 50
12 Croatia 11855 G 50 50
13 Croatia 11856 A 50 50
14 Croatia 11857 T 50 50
15 Croatia 11858 G 50 50
16 Croatia 11859 T 50 50
17 Croatia 11860 A 50 50
18 Croatia 11861 A 50 50
19 Croatia 11862 A 50 50
20 Croatia 11863 G 50 50
21 Croatia 11864 T 50 50
22 Croatia 11865 G 50 50
23 Croatia 11866 C 50 50
24 Croatia 11867 A 50 50
25 Croatia 11868 C 50 50
26 Croatia 11869 A 50 50
27 Croatia 11870 T 50 50
28 Croatia 11871 C 50 50
29 Croatia 11872 A 50 50
30 Croatia 11873 G 50 50
31 Croatia 11874 T 50 50
32 Croatia 11875 A 50 50
33 Croatia 11876 G 50 50
34 Croatia 11877 T 50 50
35 Croatia 11878 C 50 50
36 Croatia 11879 T 50 50
37 Croatia 11880 T 50 50
38 Croatia 11881 A 50 50
39 Croatia 11882 C 50 50
40 Croatia 11883 T 50 50
41 Croatia 11884 C 50 50
42 Croatia 11885 T 50 50
43 Croatia 11886 C 50 50
44 Croatia 11887 A 50 50
45 Croatia 11888 G 50 50
46 Croatia 11889 T 50 50
47 Croatia 11890 T 50 50
48 Croatia 11891 T 50 50
49 Croatia 11892 T 50 50
50 Croatia 11893 G 50 50
51 Croatia 11894 C 50 50
52 Croatia 11895 A 50 50
53 Croatia 11896 A 50 50
54 Croatia 11897 C 50 50
55 Croatia 11898 A 50 50
56 Croatia 11899 A 50 50
57 Croatia 11900 C 50 50
58 Croatia 11901 T 50 50
59 Croatia 11902 C 50 50
60 Croatia 11903 A 50 50
61 Croatia 11904 G 50 50
62 Croatia 11905 A 50 50
63 Croatia 11906 G 50 50
64 Croatia 11907 T 50 50
65 Croatia 11908 A 50 50
66 Croatia 11909 G 50 50
67 Croatia 11910 A 50 50
68 Croatia 11911 A 50 50
69 Croatia 11912 T 50 50
70 Croatia 11913 C 50 50
71 Croatia 11914 A 50 50
72 Croatia 11915 T 50 50
73 Croatia 11916 C 50 50
74 Croatia 11917 A 50 50
75 Croatia 11918 T 50 50
76 Croatia 11919 C 50 50
77 Croatia 11920 T 50 50
78 Croatia 11921 A 50 50
79 Croatia 11922 A 50 50
80 Croatia 11923 A 50 50
81 Croatia 11924 T 50 50
82 Croatia 11925 T 50 50
83 Croatia 11926 G 50 50
84 Croatia 11927 T 50 50
85 Croatia 11928 G 50 50
86 Croatia 11929 G 50 50
87 Croatia 11930 G 50 50
88 Croatia 11931 C 50 50
89 Croatia 11932 T 50 50
90 Croatia 11933 C 50 50
91 Croatia 11934 A 50 50
92 Croatia 11935 A 50 50
93 Croatia 11936 T 50 50
94 Croatia 11937 G 50 50
95 Croatia 11938 T 50 50
96 Croatia 11939 G 50 50
97 Croatia 11940 T 50 50
98 Croatia 11941 C 50 50
99 Croatia 11942 C 50 50
100 Croatia 11943 A 50 50
101 Croatia 11944 G 50 50
102 Croatia 11945 T 50 50
103 Croatia 11946 T 50 50
104 Croatia 11947 A 50 50
105 Croatia 11948 C 50 50
106 Croatia 11949 A 50 50
107 Croatia 11950 C 50 50
108 Croatia 11951 A 50 50
109 Croatia 11952 A 50 50
110 Croatia 11953 T 50 50
111 Croatia 11954 G 50 50
112 Croatia 11955 A 50 50
113 Croatia 11956 C 50 50
114 Croatia 11957 A 50 50
115 Croatia 11958 T 50 50
116 Croatia 11959 T 50 50
117 Croatia 11960 C 50 50
118 Croatia 11961 T 50 50
119 Croatia 11962 C 50 50
120 Croatia 11963 T 50 50
121 Croatia 11964 T 50 50
122 Croatia 11965 A 50 50
123 Croatia 11966 G 50 50
124 Croatia 11967 C 50 50
125 Croatia 11968 T 50 50
126 Croatia 11969 A 50 50
127 Croatia 11970 A 50 50
128 Croatia 11971 A 50 50
129 Croatia 11972 G 50 50
130 Croatia 11973 A 50 50
131 Croatia 11974 T 50 50
132 Croatia 11975 A 50 50
133 Croatia 11976 C 50 50
134 Croatia 11977 T 50 50
135 Croatia 11978 A 50 50
136 Croatia 11979 C 50 50
137 Croatia 11980 T 50 50
138 Croatia 11981 G 50 50
139 Croatia 11982 A 50 50
140 Croatia 11983 A 50 50
141 Croatia 11984 G 50 50
142 Croatia 11985 C 50 50
143 Croatia 11986 C 50 50
144 Croatia 11987 T 50 50
145 Croatia 11988 T 50 50
146 Croatia 11989 T 50 50
147 Croatia 11990 G 50 50
148 Croatia 11991 A G 50 47 Glu3909Gly
149 Croatia 11992 A 50 50
150 Croatia 11993 A 50 50
151 Croatia 11994 A 50 50
152 Croatia 11995 A 50 50
153 Croatia 11996 A 50 50
154 Croatia 11997 T 50 50
155 Croatia 11998 G 50 50
156 Croatia 11999 G 50 50
157 Croatia 12000 T 50 50
158 Croatia 12001 T 50 50
159 Croatia 12002 T 50 50
160 Croatia 12003 C 50 50
161 Croatia 12004 A 50 50
162 Croatia 12005 C 50 50
163 Croatia 12006 T 50 50
164 Croatia 12007 A 50 50
165 Croatia 12008 C 50 50
166 Croatia 12009 T 50 50
167 Croatia 12010 T 50 50
168 Croatia 12011 T 50 50
169 Croatia 12012 C 50 50
170 Croatia 12013 T 50 50
171 Croatia 12014 G 50 50
172 Croatia 12015 T 50 50
173 Croatia 12016 T 50 50
174 Croatia 12017 T 50 50
175 Croatia 12018 T 50 50
176 Croatia 12019 G 50 50
177 Croatia 12020 C 50 50
178 Croatia 12021 T 50 50
179 Croatia 12022 T 50 50
180 Croatia 12023 T 50 50
181 Croatia 12024 C 50 50
182 Croatia 12025 C 50 50
183 Croatia 12026 A 50 50
184 Croatia 12027 T 50 50
185 Croatia 12028 G 50 50
186 Croatia 12029 C 50 50
187 Croatia 12030 A 50 50
188 Croatia 12031 G 50 50
189 Croatia 12032 G 50 50
190 Croatia 12033 G 50 50
191 Croatia 12034 T 50 50
192 Croatia 12035 G 50 50
193 Croatia 12036 C 50 50
194 Croatia 12037 T 50 50
195 Croatia 12038 G 50 50
196 Croatia 12039 T 50 50
197 Croatia 12040 A 50 50
198 Croatia 12041 G 50 50
199 Croatia 12042 A 50 50
200 Croatia 12043 C 50 50
201 Croatia 12044 A 50 50
202 Croatia 12045 T 50 50
203 Croatia 12046 A 50 50
204 Croatia 12047 A 50 50
205 Croatia 12048 A 50 50
206 Croatia 12049 C 50 50
207 Croatia 12050 A 50 50
208 Croatia 12051 A 50 50
209 Croatia 12052 G 50 50
210 Croatia 12053 C 50 50
211 Croatia 12054 T 50 50
212 Croatia 12055 T 50 50
213 Croatia 12056 T 50 50
214 Croatia 12057 G 50 50
215 Croatia 12058 T 50 50
216 Croatia 12059 G 50 50
217 Croatia 12060 A 50 50
218 Croatia 12061 A 50 50
219 Croatia 12062 G 50 50
220 Croatia 12063 A 50 50
221 Croatia 12064 A 50 50
222 Croatia 12065 A 50 50
223 Croatia 12066 T 50 50
224 Croatia 12067 G 50 50
225 Croatia 12068 C 50 50
226 Croatia 12069 T 50 50
227 Croatia 12070 G 50 50
228 Croatia 12071 G 50 50
229 Croatia 12072 A 50 50
230 Croatia 12073 C 50 50
231 Croatia 12074 A 49 49
232 Croatia 12075 A 49 49
233 Croatia 12076 C 49 49
234 Croatia 12077 A 49 49
235 Croatia 12078 G 49 49
236 Croatia 12079 G 49 49
237 Croatia 12080 G 49 49
238 Croatia 12081 C 49 49
239 Croatia 12082 A 49 49
240 Croatia 12083 A 49 49
241 Croatia 12084 C 49 49
242 Croatia 12085 C 49 49
243 Croatia 12086 T 49 49
244 Croatia 12087 T 49 49
245 Croatia 12088 A 49 49
246 Croatia 12089 C 49 49
247 Croatia 12090 A 49 49
248 Croatia 12091 A 49 49