National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                 1                  
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 CotedIvoire 11843 T 65 65
1 CotedIvoire 11844 C 65 65
2 CotedIvoire 11845 T 65 65
3 CotedIvoire 11846 A 65 65
4 CotedIvoire 11847 A 65 65
5 CotedIvoire 11848 A G 65 63 Lys3861Lys
6 CotedIvoire 11849 A 65 65
7 CotedIvoire 11850 T 65 65
8 CotedIvoire 11851 G 65 65
9 CotedIvoire 11852 T 65 65
10 CotedIvoire 11853 C 65 65
11 CotedIvoire 11854 A 65 65
12 CotedIvoire 11855 G 65 65
13 CotedIvoire 11856 A 65 65
14 CotedIvoire 11857 T 65 65
15 CotedIvoire 11858 G 65 65
16 CotedIvoire 11859 T 65 65
17 CotedIvoire 11860 A 65 65
18 CotedIvoire 11861 A 65 65
19 CotedIvoire 11862 A 65 65
20 CotedIvoire 11863 G 65 65
21 CotedIvoire 11864 T 65 65
22 CotedIvoire 11865 G 65 65
23 CotedIvoire 11866 C 65 65
24 CotedIvoire 11867 A 65 65
25 CotedIvoire 11868 C 65 65
26 CotedIvoire 11869 A 65 65
27 CotedIvoire 11870 T 65 65
28 CotedIvoire 11871 C 65 65
29 CotedIvoire 11872 A 65 65
30 CotedIvoire 11873 G 65 65
31 CotedIvoire 11874 T 65 65
32 CotedIvoire 11875 A 65 65
33 CotedIvoire 11876 G 65 65
34 CotedIvoire 11877 T 65 65
35 CotedIvoire 11878 C 65 65
36 CotedIvoire 11879 T 65 65
37 CotedIvoire 11880 T 65 65
38 CotedIvoire 11881 A 65 65
39 CotedIvoire 11882 C 65 65
40 CotedIvoire 11883 T 65 65
41 CotedIvoire 11884 C 65 65
42 CotedIvoire 11885 T 65 65
43 CotedIvoire 11886 C 65 65
44 CotedIvoire 11887 A 65 65
45 CotedIvoire 11888 G 65 65
46 CotedIvoire 11889 T 65 65
47 CotedIvoire 11890 T 65 65
48 CotedIvoire 11891 T 65 65
49 CotedIvoire 11892 T 65 65
50 CotedIvoire 11893 G 65 65
51 CotedIvoire 11894 C 65 65
52 CotedIvoire 11895 A 65 65
53 CotedIvoire 11896 A 65 65
54 CotedIvoire 11897 C 65 65
55 CotedIvoire 11898 A 65 65
56 CotedIvoire 11899 A 65 65
57 CotedIvoire 11900 C 65 65
58 CotedIvoire 11901 T 65 65
59 CotedIvoire 11902 C 65 65
60 CotedIvoire 11903 A 65 65
61 CotedIvoire 11904 G 65 65
62 CotedIvoire 11905 A 65 65
63 CotedIvoire 11906 G 65 65
64 CotedIvoire 11907 T 65 65
65 CotedIvoire 11908 A 65 65
66 CotedIvoire 11909 G 65 65
67 CotedIvoire 11910 A 65 65
68 CotedIvoire 11911 A 65 65
69 CotedIvoire 11912 T 65 65
70 CotedIvoire 11913 C 65 65
71 CotedIvoire 11914 A 65 65
72 CotedIvoire 11915 T 65 65
73 CotedIvoire 11916 C 65 65
74 CotedIvoire 11917 A 65 65
75 CotedIvoire 11918 T 65 65
76 CotedIvoire 11919 C 65 65
77 CotedIvoire 11920 T 65 65
78 CotedIvoire 11921 A 65 65
79 CotedIvoire 11922 A 65 65
80 CotedIvoire 11923 A 65 65
81 CotedIvoire 11924 T 65 65
82 CotedIvoire 11925 T 65 65
83 CotedIvoire 11926 G 65 65
84 CotedIvoire 11927 T 65 65
85 CotedIvoire 11928 G 65 65
86 CotedIvoire 11929 G 65 65
87 CotedIvoire 11930 G 65 65
88 CotedIvoire 11931 C 65 65
89 CotedIvoire 11932 T 65 65
90 CotedIvoire 11933 C 65 65
91 CotedIvoire 11934 A 65 65
92 CotedIvoire 11935 A 65 65
93 CotedIvoire 11936 T 65 65
94 CotedIvoire 11937 G 65 65
95 CotedIvoire 11938 T 65 65
96 CotedIvoire 11939 G 65 65
97 CotedIvoire 11940 T 65 65
98 CotedIvoire 11941 C 65 65
99 CotedIvoire 11942 C 65 65
100 CotedIvoire 11943 A 65 65
101 CotedIvoire 11944 G 65 65
102 CotedIvoire 11945 T 65 65
103 CotedIvoire 11946 T 65 65
104 CotedIvoire 11947 A 65 65
105 CotedIvoire 11948 C 65 65
106 CotedIvoire 11949 A 65 65
107 CotedIvoire 11950 C 65 65
108 CotedIvoire 11951 A 65 65
109 CotedIvoire 11952 A 65 65
110 CotedIvoire 11953 T 65 65
111 CotedIvoire 11954 G 65 65
112 CotedIvoire 11955 A 65 65
113 CotedIvoire 11956 C 65 65
114 CotedIvoire 11957 A 65 65
115 CotedIvoire 11958 T 65 65
116 CotedIvoire 11959 T 65 65
117 CotedIvoire 11960 C 65 65
118 CotedIvoire 11961 T 65 65
119 CotedIvoire 11962 C 65 65
120 CotedIvoire 11963 T 65 65
121 CotedIvoire 11964 T 65 65
122 CotedIvoire 11965 A 65 65
123 CotedIvoire 11966 G 65 65
124 CotedIvoire 11967 C 65 65
125 CotedIvoire 11968 T 65 65
126 CotedIvoire 11969 A 65 65
127 CotedIvoire 11970 A 65 65
128 CotedIvoire 11971 A 65 65
129 CotedIvoire 11972 G 65 65
130 CotedIvoire 11973 A 65 65
131 CotedIvoire 11974 T 65 65
132 CotedIvoire 11975 A 65 65
133 CotedIvoire 11976 C 65 65
134 CotedIvoire 11977 T 65 65
135 CotedIvoire 11978 A 65 65
136 CotedIvoire 11979 C 65 65
137 CotedIvoire 11980 T 65 65
138 CotedIvoire 11981 G 65 65
139 CotedIvoire 11982 A 65 65
140 CotedIvoire 11983 A 65 65
141 CotedIvoire 11984 G 65 65
142 CotedIvoire 11985 C 65 65
143 CotedIvoire 11986 C 65 65
144 CotedIvoire 11987 T 65 65
145 CotedIvoire 11988 T 65 65
146 CotedIvoire 11989 T 65 65
147 CotedIvoire 11990 G 65 65
148 CotedIvoire 11991 A 65 65
149 CotedIvoire 11992 A 65 65
150 CotedIvoire 11993 A 65 65
151 CotedIvoire 11994 A 65 65
152 CotedIvoire 11995 A 65 65
153 CotedIvoire 11996 A 65 65
154 CotedIvoire 11997 T 65 65
155 CotedIvoire 11998 G 65 65
156 CotedIvoire 11999 G 65 65
157 CotedIvoire 12000 T 65 65
158 CotedIvoire 12001 T 65 65
159 CotedIvoire 12002 T 65 65
160 CotedIvoire 12003 C 65 65
161 CotedIvoire 12004 A 65 65
162 CotedIvoire 12005 C 65 65
163 CotedIvoire 12006 T 65 65
164 CotedIvoire 12007 A 65 65
165 CotedIvoire 12008 C 65 65
166 CotedIvoire 12009 T 65 65
167 CotedIvoire 12010 T 65 65
168 CotedIvoire 12011 T 65 65
169 CotedIvoire 12012 C 65 65
170 CotedIvoire 12013 T 65 65
171 CotedIvoire 12014 G 65 65
172 CotedIvoire 12015 T 65 65
173 CotedIvoire 12016 T 65 65
174 CotedIvoire 12017 T 65 65
175 CotedIvoire 12018 T 65 65
176 CotedIvoire 12019 G 65 65
177 CotedIvoire 12020 C 65 65
178 CotedIvoire 12021 T 65 65
179 CotedIvoire 12022 T 65 65
180 CotedIvoire 12023 T 65 65
181 CotedIvoire 12024 C 65 65
182 CotedIvoire 12025 C 65 65
183 CotedIvoire 12026 A 65 65
184 CotedIvoire 12027 T 65 65
185 CotedIvoire 12028 G 65 65
186 CotedIvoire 12029 C 65 65
187 CotedIvoire 12030 A 65 65
188 CotedIvoire 12031 G 65 65
189 CotedIvoire 12032 G 65 65
190 CotedIvoire 12033 G 65 65
191 CotedIvoire 12034 T 65 65
192 CotedIvoire 12035 G 65 65
193 CotedIvoire 12036 C 65 65
194 CotedIvoire 12037 T 65 65
195 CotedIvoire 12038 G 65 65
196 CotedIvoire 12039 T 65 65
197 CotedIvoire 12040 A 65 65
198 CotedIvoire 12041 G 65 65
199 CotedIvoire 12042 A 65 65
200 CotedIvoire 12043 C 65 65
201 CotedIvoire 12044 A 65 65
202 CotedIvoire 12045 T 65 65
203 CotedIvoire 12046 A 65 65
204 CotedIvoire 12047 A 65 65
205 CotedIvoire 12048 A 65 65
206 CotedIvoire 12049 C 65 65
207 CotedIvoire 12050 A 65 65
208 CotedIvoire 12051 A 65 65
209 CotedIvoire 12052 G 65 65
210 CotedIvoire 12053 C 65 65
211 CotedIvoire 12054 T 65 65
212 CotedIvoire 12055 T 65 65
213 CotedIvoire 12056 T 65 65
214 CotedIvoire 12057 G 65 65
215 CotedIvoire 12058 T 65 65
216 CotedIvoire 12059 G 65 65
217 CotedIvoire 12060 A 65 65
218 CotedIvoire 12061 A 65 65
219 CotedIvoire 12062 G 65 65
220 CotedIvoire 12063 A 65 65
221 CotedIvoire 12064 A 65 65
222 CotedIvoire 12065 A 65 65
223 CotedIvoire 12066 T 65 65
224 CotedIvoire 12067 G 65 65
225 CotedIvoire 12068 C 65 65
226 CotedIvoire 12069 T 65 65
227 CotedIvoire 12070 G 65 65
228 CotedIvoire 12071 G 65 65
229 CotedIvoire 12072 A 65 65
230 CotedIvoire 12073 C 65 65
231 CotedIvoire 12074 A 65 65
232 CotedIvoire 12075 A 65 65
233 CotedIvoire 12076 C 65 65
234 CotedIvoire 12077 A 65 65
235 CotedIvoire 12078 G 65 65
236 CotedIvoire 12079 G 65 65
237 CotedIvoire 12080 G 65 65
238 CotedIvoire 12081 C 65 65
239 CotedIvoire 12082 A 65 65
240 CotedIvoire 12083 A 65 65
241 CotedIvoire 12084 C 65 65
242 CotedIvoire 12085 C 65 65
243 CotedIvoire 12086 T 65 65
244 CotedIvoire 12087 T 65 65
245 CotedIvoire 12088 A 65 65
246 CotedIvoire 12089 C 65 65
247 CotedIvoire 12090 A 65 65
248 CotedIvoire 12091 A 65 65