National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                 1  
C   9                                    
D   15                                    
E   15       1                            
F   3                                    
G   3                                    
H   3             1                      
I   6                                    
K   18                                    
L   45                                    
M   12               1                    
N   9                                    
Q   18                                    
R   6                                    
S   30                   1                
T   12                                    
V   27                                 1  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Colombia 11843 T 284 284
1 Colombia 11844 C 284 284
2 Colombia 11845 T 284 284
3 Colombia 11846 A 284 284
4 Colombia 11847 A 284 284
5 Colombia 11848 A 284 284
6 Colombia 11849 A 284 284
7 Colombia 11850 T 284 284
8 Colombia 11851 G 284 284
9 Colombia 11852 T 284 284
10 Colombia 11853 C 284 284
11 Colombia 11854 A 284 284
12 Colombia 11855 G 284 284
13 Colombia 11856 A 284 284
14 Colombia 11857 T 284 284
15 Colombia 11858 G 284 284
16 Colombia 11859 T 284 284
17 Colombia 11860 A 284 284
18 Colombia 11861 A 284 284
19 Colombia 11862 A 284 284
20 Colombia 11863 G 284 284
21 Colombia 11864 T 284 284
22 Colombia 11865 G 284 284
23 Colombia 11866 C 284 284
24 Colombia 11867 A 284 284
25 Colombia 11868 C 284 284
26 Colombia 11869 A 284 284
27 Colombia 11870 T 284 284
28 Colombia 11871 C 284 284
29 Colombia 11872 A 284 284
30 Colombia 11873 G 284 284
31 Colombia 11874 T 284 284
32 Colombia 11875 A 284 284
33 Colombia 11876 G 285 285
34 Colombia 11877 T 285 285
35 Colombia 11878 C 285 285
36 Colombia 11879 T 285 285
37 Colombia 11880 T 285 285
38 Colombia 11881 A 285 285
39 Colombia 11882 C 285 285
40 Colombia 11883 T 285 285
41 Colombia 11884 C 285 285
42 Colombia 11885 T 285 285
43 Colombia 11886 C 285 285
44 Colombia 11887 A 285 285
45 Colombia 11888 G 285 285
46 Colombia 11889 T 285 285
47 Colombia 11890 T 287 287
48 Colombia 11891 T 287 287
49 Colombia 11892 T 287 287
50 Colombia 11893 G 287 287
51 Colombia 11894 C 287 287
52 Colombia 11895 A 287 287
53 Colombia 11896 A 287 287
54 Colombia 11897 C 287 287
55 Colombia 11898 A 287 287
56 Colombia 11899 A 287 287
57 Colombia 11900 C 287 287
58 Colombia 11901 T 287 287
59 Colombia 11902 C 287 287
60 Colombia 11903 A 287 287
61 Colombia 11904 G 287 287
62 Colombia 11905 A 287 287
63 Colombia 11906 G 287 287
64 Colombia 11907 T 287 287
65 Colombia 11908 A 287 287
66 Colombia 11909 G 287 287
67 Colombia 11910 A 287 287
68 Colombia 11911 A 287 287
69 Colombia 11912 T 287 287
70 Colombia 11913 C 287 287
71 Colombia 11914 A 287 287
72 Colombia 11915 T 287 287
73 Colombia 11916 C T 287 284 Ser3884Leu
74 Colombia 11917 A 287 287
75 Colombia 11918 T 287 287
76 Colombia 11919 C 287 287
77 Colombia 11920 T 287 287
78 Colombia 11921 A 287 287
79 Colombia 11922 A 287 287
80 Colombia 11923 A 287 287
81 Colombia 11924 T 287 287
82 Colombia 11925 T 287 287
83 Colombia 11926 G 287 287
84 Colombia 11927 T 287 287
85 Colombia 11928 G 287 287
86 Colombia 11929 G 287 287
87 Colombia 11930 G 287 287
88 Colombia 11931 C 287 287
89 Colombia 11932 T 287 287
90 Colombia 11933 C 287 287
91 Colombia 11934 A 287 287
92 Colombia 11935 A 287 287
93 Colombia 11936 T 287 287
94 Colombia 11937 G 287 287
95 Colombia 11938 T 287 287
96 Colombia 11939 G 287 287
97 Colombia 11940 T 287 287
98 Colombia 11941 C T 287 285 Val3892Val
99 Colombia 11942 C 287 287
100 Colombia 11943 A 287 287
101 Colombia 11944 G 287 287
102 Colombia 11945 T 287 287
103 Colombia 11946 T 287 287
104 Colombia 11947 A 287 287
105 Colombia 11948 C 287 287
106 Colombia 11949 A 287 287
107 Colombia 11950 C T 287 286 His3895His
108 Colombia 11951 A 287 287
109 Colombia 11952 A 287 287
110 Colombia 11953 T 287 287
111 Colombia 11954 G 287 287
112 Colombia 11955 A 287 287
113 Colombia 11956 C 287 287
114 Colombia 11957 A 287 287
115 Colombia 11958 T 287 287
116 Colombia 11959 T 287 287
117 Colombia 11960 C 287 287
118 Colombia 11961 T 287 287
119 Colombia 11962 C 287 287
120 Colombia 11963 T 287 287
121 Colombia 11964 T 287 287
122 Colombia 11965 A 287 287
123 Colombia 11966 G 287 287
124 Colombia 11967 C 287 287
125 Colombia 11968 T 287 287
126 Colombia 11969 A 287 287
127 Colombia 11970 A 287 287
128 Colombia 11971 A 287 287
129 Colombia 11972 G 287 287
130 Colombia 11973 A 287 287
131 Colombia 11974 T 287 287
132 Colombia 11975 A 287 287
133 Colombia 11976 C 287 287
134 Colombia 11977 T 287 287
135 Colombia 11978 A 287 287
136 Colombia 11979 C 287 287
137 Colombia 11980 T 287 287
138 Colombia 11981 G 287 287
139 Colombia 11982 A 287 287
140 Colombia 11983 A G 287 286 Glu3906Glu
141 Colombia 11984 G 287 287
142 Colombia 11985 C 287 287
143 Colombia 11986 C 287 287
144 Colombia 11987 T 287 287
145 Colombia 11988 T 287 287
146 Colombia 11989 T 287 287
147 Colombia 11990 G 287 287
148 Colombia 11991 A 287 287
149 Colombia 11992 A 287 287
150 Colombia 11993 A 287 287
151 Colombia 11994 A 287 287
152 Colombia 11995 A 287 287
153 Colombia 11996 A 287 287
154 Colombia 11997 T 287 287
155 Colombia 11998 G 287 287
156 Colombia 11999 G 287 287
157 Colombia 12000 T 287 287
158 Colombia 12001 T 287 287
159 Colombia 12002 T 287 287
160 Colombia 12003 C 287 287
161 Colombia 12004 A 287 287
162 Colombia 12005 C 287 287
163 Colombia 12006 T 287 287
164 Colombia 12007 A 287 287
165 Colombia 12008 C 287 287
166 Colombia 12009 T 287 287
167 Colombia 12010 T 287 287
168 Colombia 12011 T 287 287
169 Colombia 12012 C 287 287
170 Colombia 12013 T 287 287
171 Colombia 12014 G 287 287
172 Colombia 12015 T 287 287
173 Colombia 12016 T 287 287
174 Colombia 12017 T 287 287
175 Colombia 12018 T 287 287
176 Colombia 12019 G 287 287
177 Colombia 12020 C 287 287
178 Colombia 12021 T 287 287
179 Colombia 12022 T 287 287
180 Colombia 12023 T 287 287
181 Colombia 12024 C 287 287
182 Colombia 12025 C 287 287
183 Colombia 12026 A 287 287
184 Colombia 12027 T 287 287
185 Colombia 12028 G 287 287
186 Colombia 12029 C 287 287
187 Colombia 12030 A 287 287
188 Colombia 12031 G 287 287
189 Colombia 12032 G 287 287
190 Colombia 12033 G 287 287
191 Colombia 12034 T 287 287
192 Colombia 12035 G 287 287
193 Colombia 12036 C 287 287
194 Colombia 12037 T 287 287
195 Colombia 12038 G 287 287
196 Colombia 12039 T 287 287
197 Colombia 12040 A 287 287
198 Colombia 12041 G 287 287
199 Colombia 12042 A 287 287
200 Colombia 12043 C 287 287
201 Colombia 12044 A 287 287
202 Colombia 12045 T 287 287
203 Colombia 12046 A 287 287
204 Colombia 12047 A 287 287
205 Colombia 12048 A 287 287
206 Colombia 12049 C 287 287
207 Colombia 12050 A 287 287
208 Colombia 12051 A 287 287
209 Colombia 12052 G 287 287
210 Colombia 12053 C 287 287
211 Colombia 12054 T 287 287
212 Colombia 12055 T 287 287
213 Colombia 12056 T 287 287
214 Colombia 12057 G 287 287
215 Colombia 12058 T 287 287
216 Colombia 12059 G 287 287
217 Colombia 12060 A 287 287
218 Colombia 12061 A 287 287
219 Colombia 12062 G 287 287
220 Colombia 12063 A 287 287
221 Colombia 12064 A 287 287
222 Colombia 12065 A 287 287
223 Colombia 12066 T 287 287
224 Colombia 12067 G T 287 286 Met3934Ile
225 Colombia 12068 C 287 287
226 Colombia 12069 T 287 287
227 Colombia 12070 G 287 287
228 Colombia 12071 G 287 287
229 Colombia 12072 A 287 287
230 Colombia 12073 C 287 287
231 Colombia 12074 A 287 287
232 Colombia 12075 A 287 287
233 Colombia 12076 C 287 287
234 Colombia 12077 A 287 287
235 Colombia 12078 G 287 287
236 Colombia 12079 G 287 287
237 Colombia 12080 G 287 287
238 Colombia 12081 C T 287 286 Ala3939Val
239 Colombia 12082 A 287 287
240 Colombia 12083 A 287 287
241 Colombia 12084 C 287 287
242 Colombia 12085 C 287 287
243 Colombia 12086 T 287 287
244 Colombia 12087 T 287 287
245 Colombia 12088 A 287 287
246 Colombia 12089 C 287 287
247 Colombia 12090 A 287 287
248 Colombia 12091 A 287 287