National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15 1                                  
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                       1            
Q   18                                    
R   6                                    
S   30                   2         1      
T   12               1               1    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Chile 11843 T 959 959
1 Chile 11844 C 959 959
2 Chile 11845 T 959 959
3 Chile 11846 A 960 960
4 Chile 11847 A 960 960
5 Chile 11848 A 960 960
6 Chile 11849 A 960 960
7 Chile 11850 T 960 960
8 Chile 11851 G 960 960
9 Chile 11852 T 960 960
10 Chile 11853 C 960 960
11 Chile 11854 A 960 960
12 Chile 11855 G 960 960
13 Chile 11856 A 960 960
14 Chile 11857 T 960 960
15 Chile 11858 G 960 960
16 Chile 11859 T 960 960
17 Chile 11860 A 960 960
18 Chile 11861 A 961 961
19 Chile 11862 A 962 962
20 Chile 11863 G 965 965
21 Chile 11864 T 966 966
22 Chile 11865 G 966 966
23 Chile 11866 C 966 966
24 Chile 11867 A 966 966
25 Chile 11868 C 966 966
26 Chile 11869 A 966 966
27 Chile 11870 T 966 966
28 Chile 11871 C 966 966
29 Chile 11872 A T 966 965 Ser3869Ser
30 Chile 11873 G 966 966
31 Chile 11874 T 966 966
32 Chile 11875 A 966 966
33 Chile 11876 G 966 966
34 Chile 11877 T 966 966
35 Chile 11878 C 966 966
36 Chile 11879 T 966 966
37 Chile 11880 T 966 966
38 Chile 11881 A 966 966
39 Chile 11882 C 966 966
40 Chile 11883 T 966 966
41 Chile 11884 C 966 966
42 Chile 11885 T 966 966
43 Chile 11886 C T 966 965 Ser3874Leu
44 Chile 11887 A 966 966
45 Chile 11888 G 966 966
46 Chile 11889 T 966 966
47 Chile 11890 T 966 966
48 Chile 11891 T 966 966
49 Chile 11892 T 966 966
50 Chile 11893 G 966 966
51 Chile 11894 C 966 966
52 Chile 11895 A 966 966
53 Chile 11896 A 966 966
54 Chile 11897 C 966 966
55 Chile 11898 A 966 966
56 Chile 11899 A 966 966
57 Chile 11900 C 966 966
58 Chile 11901 T 966 966
59 Chile 11902 C 966 966
60 Chile 11903 A 966 966
61 Chile 11904 G 966 966
62 Chile 11905 A 966 966
63 Chile 11906 G 966 966
64 Chile 11907 T 966 966
65 Chile 11908 A 966 966
66 Chile 11909 G 966 966
67 Chile 11910 A 966 966
68 Chile 11911 A 966 966
69 Chile 11912 T 966 966
70 Chile 11913 C 966 966
71 Chile 11914 A 966 966
72 Chile 11915 T 966 966
73 Chile 11916 C T 966 964 Ser3884Leu
74 Chile 11917 A 966 966
75 Chile 11918 T 966 966
76 Chile 11919 C 966 966
77 Chile 11920 T 966 966
78 Chile 11921 A 966 966
79 Chile 11922 A 966 966
80 Chile 11923 A 966 966
81 Chile 11924 T 966 966
82 Chile 11925 T 966 966
83 Chile 11926 G 966 966
84 Chile 11927 T 966 966
85 Chile 11928 G 966 966
86 Chile 11929 G 966 966
87 Chile 11930 G 966 966
88 Chile 11931 C 966 966
89 Chile 11932 T 966 966
90 Chile 11933 C 966 966
91 Chile 11934 A 966 966
92 Chile 11935 A 966 966
93 Chile 11936 T 966 966
94 Chile 11937 G 966 966
95 Chile 11938 T 966 966
96 Chile 11939 G 966 966
97 Chile 11940 T 966 966
98 Chile 11941 C 966 966
99 Chile 11942 C 966 966
100 Chile 11943 A 966 966
101 Chile 11944 G 966 966
102 Chile 11945 T 966 966
103 Chile 11946 T 966 966
104 Chile 11947 A 966 966
105 Chile 11948 C 966 966
106 Chile 11949 A 966 966
107 Chile 11950 C 966 966
108 Chile 11951 A 966 966
109 Chile 11952 A 966 966
110 Chile 11953 T 966 966
111 Chile 11954 G 966 966
112 Chile 11955 A 966 966
113 Chile 11956 C 966 966
114 Chile 11957 A 966 966
115 Chile 11958 T 966 966
116 Chile 11959 T 966 966
117 Chile 11960 C 966 966
118 Chile 11961 T 966 966
119 Chile 11962 C 966 966
120 Chile 11963 T 966 966
121 Chile 11964 T 966 966
122 Chile 11965 A 966 966
123 Chile 11966 G 966 966
124 Chile 11967 C 966 966
125 Chile 11968 T 966 966
126 Chile 11969 A 966 966
127 Chile 11970 A 966 966
128 Chile 11971 A 966 966
129 Chile 11972 G 966 966
130 Chile 11973 A 966 966
131 Chile 11974 T 966 966
132 Chile 11975 A 966 966
133 Chile 11976 C T 966 965 Thr3904Ile
134 Chile 11977 T 966 966
135 Chile 11978 A 966 966
136 Chile 11979 C 966 966
137 Chile 11980 T 966 966
138 Chile 11981 G 966 966
139 Chile 11982 A 966 966
140 Chile 11983 A 966 966
141 Chile 11984 G 966 966
142 Chile 11985 C 966 966
143 Chile 11986 C T 966 965 Ala3907Ala
144 Chile 11987 T 966 966
145 Chile 11988 T 966 966
146 Chile 11989 T 966 966
147 Chile 11990 G 966 966
148 Chile 11991 A 966 966
149 Chile 11992 A 966 966
150 Chile 11993 A 966 966
151 Chile 11994 A 966 966
152 Chile 11995 A 966 966
153 Chile 11996 A 966 966
154 Chile 11997 T 966 966
155 Chile 11998 G 966 966
156 Chile 11999 G 966 966
157 Chile 12000 T 966 966
158 Chile 12001 T 966 966
159 Chile 12002 T 966 966
160 Chile 12003 C 966 966
161 Chile 12004 A 966 966
162 Chile 12005 C 966 966
163 Chile 12006 T 966 966
164 Chile 12007 A 966 966
165 Chile 12008 C 966 966
166 Chile 12009 T 966 966
167 Chile 12010 T 966 966
168 Chile 12011 T 966 966
169 Chile 12012 C 966 966
170 Chile 12013 T 966 966
171 Chile 12014 G 966 966
172 Chile 12015 T 966 966
173 Chile 12016 T 966 966
174 Chile 12017 T 966 966
175 Chile 12018 T 966 966
176 Chile 12019 G 966 966
177 Chile 12020 C 966 966
178 Chile 12021 T 966 966
179 Chile 12022 T 966 966
180 Chile 12023 T 966 966
181 Chile 12024 C 966 966
182 Chile 12025 C 966 966
183 Chile 12026 A 966 966
184 Chile 12027 T 966 966
185 Chile 12028 G 966 966
186 Chile 12029 C 966 966
187 Chile 12030 A 966 966
188 Chile 12031 G 966 966
189 Chile 12032 G 966 966
190 Chile 12033 G 966 966
191 Chile 12034 T 966 966
192 Chile 12035 G 966 966
193 Chile 12036 C 966 966
194 Chile 12037 T 966 966
195 Chile 12038 G 966 966
196 Chile 12039 T 966 966
197 Chile 12040 A 966 966
198 Chile 12041 G 966 966
199 Chile 12042 A 966 966
200 Chile 12043 C 966 966
201 Chile 12044 A 966 966
202 Chile 12045 T 966 966
203 Chile 12046 A 966 966
204 Chile 12047 A 966 966
205 Chile 12048 A 966 966
206 Chile 12049 C 966 966
207 Chile 12050 A 966 966
208 Chile 12051 A 966 966
209 Chile 12052 G 966 966
210 Chile 12053 C 966 966
211 Chile 12054 T 966 966
212 Chile 12055 T 966 966
213 Chile 12056 T 966 966
214 Chile 12057 G 966 966
215 Chile 12058 T 966 966
216 Chile 12059 G 966 966
217 Chile 12060 A 966 966
218 Chile 12061 A 966 966
219 Chile 12062 G 966 966
220 Chile 12063 A 966 966
221 Chile 12064 A 966 966
222 Chile 12065 A 966 966
223 Chile 12066 T 966 966
224 Chile 12067 G 966 966
225 Chile 12068 C 966 966
226 Chile 12069 T 966 966
227 Chile 12070 G 966 966
228 Chile 12071 G 966 966
229 Chile 12072 A 966 966
230 Chile 12073 C 966 966
231 Chile 12074 A 966 966
232 Chile 12075 A 966 966
233 Chile 12076 C T 966 965 Asn3937Asn
234 Chile 12077 A 966 966
235 Chile 12078 G 966 966
236 Chile 12079 G 966 966
237 Chile 12080 G 966 966
238 Chile 12081 C 966 966
239 Chile 12082 A 966 966
240 Chile 12083 A 966 966
241 Chile 12084 C 966 966
242 Chile 12085 C T 966 954 Thr3940Thr
243 Chile 12086 T 966 966
244 Chile 12087 T 966 966
245 Chile 12088 A 966 966
246 Chile 12089 C 966 966
247 Chile 12090 A 966 966
248 Chile 12091 A 966 966