National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W Y
-   249                                      
?                                          
A   15 2                               1    
C   9   1                                  
D   15     2     1           1             1
E   15           1                          
F   3                                      
G   3                                      
H   3             1                        
I   6                                      
K   18                 1     1   1          
L   45         3         4                  
M   12               3                      
N   9                       2     1        
Q   18                                      
R   6                                      
S   30         1         2         2 1      
T   12               2               1      
V   27           1   1                 4    
W   3                                      
Y                                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Canada 11843 T 8551 8551
1 Canada 11844 C 8551 8551
2 Canada 11845 T 8551 8551
3 Canada 11846 A 8551 8551
4 Canada 11847 A 8551 8551
5 Canada 11848 A 8551 8551
6 Canada 11849 A 8551 8551
7 Canada 11850 T 8551 8551
8 Canada 11851 G T 8551 8550 Met3862Ile
9 Canada 11852 T 8551 8551
10 Canada 11853 C 8552 8552
11 Canada 11854 A 8552 8552
12 Canada 11855 G 8552 8552
13 Canada 11856 A 8552 8552
14 Canada 11857 T 8552 8552
15 Canada 11858 G A 8552 8551 Val3865Ile
16 Canada 11859 T 8552 8552
17 Canada 11860 A G 8552 8551 Val3865Val
18 Canada 11861 A 8552 8552
19 Canada 11862 A G 8552 8551 Lys3866Arg
20 Canada 11863 G 8552 8552
21 Canada 11864 T 8552 8547
22 Canada 11865 G 8552 8547
23 Canada 11866 C T 8552 8545 Cys3867Cys
24 Canada 11867 A 8552 8547
25 Canada 11868 C T 8553 8549 Thr3868Ile
26 Canada 11869 A 8553 8551
27 Canada 11870 T 8555 8555
28 Canada 11871 C 8555 8555
29 Canada 11872 A G 8555 8549 Ser3869Ser
30 Canada 11873 G 8555 8555
31 Canada 11874 T 8555 8555
32 Canada 11875 A 8555 8555
33 Canada 11876 G 8555 8555
34 Canada 11877 T 8555 8555
35 Canada 11878 C T 8555 8554 Val3871Val
36 Canada 11879 T 8555 8555
37 Canada 11880 T 8555 8555
38 Canada 11881 A 8555 8555
39 Canada 11882 C 8555 8555
40 Canada 11883 T 8555 8555
41 Canada 11884 C T 8555 8554 Leu3873Leu
42 Canada 11885 T A 8555 8541 Ser3874Thr
43 Canada 11886 C T 8555 8553 Ser3874Leu
44 Canada 11887 A 8555 8555
45 Canada 11888 G 8555 8555
46 Canada 11889 T 8555 8555
47 Canada 11890 T C 8560 8555 Val3875Val
48 Canada 11891 T 8560 8560
49 Canada 11892 T 8560 8560
50 Canada 11893 G 8560 8560
51 Canada 11894 C 8560 8560
52 Canada 11895 A 8560 8560
53 Canada 11896 A 8560 8560
54 Canada 11897 C 8560 8560
55 Canada 11898 A 8560 8560
56 Canada 11899 A 8560 8560
57 Canada 11900 C T 8560 8559 Leu3879Phe
58 Canada 11901 T 8560 8560
59 Canada 11902 C T 8560 8559 Leu3879Leu
60 Canada 11903 A 8560 8560
61 Canada 11904 G 8560 8560
62 Canada 11905 A 8560 8560
63 Canada 11906 G 8560 8560
64 Canada 11907 T 8560 8560
65 Canada 11908 A 8560 8560
66 Canada 11909 G 8560 8560
67 Canada 11910 A 8560 8560
68 Canada 11911 A 8560 8560
69 Canada 11912 T 8560 8560
70 Canada 11913 C 8560 8560
71 Canada 11914 A 8560 8560
72 Canada 11915 T 8560 8560
73 Canada 11916 C T 8560 8369 Ser3884Leu
74 Canada 11917 A 8560 8560
75 Canada 11918 T 8560 8560
76 Canada 11919 C T 8560 8555 Ser3885Phe
77 Canada 11920 T 8560 8560
78 Canada 11921 A 8560 8560
79 Canada 11922 A 8560 8560
80 Canada 11923 A G 8560 8559 Lys3886Lys
81 Canada 11924 T 8560 8560
82 Canada 11925 T 8560 8560
83 Canada 11926 G 8560 8560
84 Canada 11927 T 8560 8560
85 Canada 11928 G 8533 8533
86 Canada 11929 G 8533 8533
87 Canada 11930 G 8533 8533
88 Canada 11931 C 8533 8533
89 Canada 11932 T 8533 8533
90 Canada 11933 C 8533 8533
91 Canada 11934 A 8533 8533
92 Canada 11935 A 8533 8533
93 Canada 11936 T 8533 8533
94 Canada 11937 G 8533 8533
95 Canada 11938 T 8533 8533
96 Canada 11939 G 8533 8533
97 Canada 11940 T 8533 8533
98 Canada 11941 C T 8533 8508 Val3892Val
99 Canada 11942 C 8533 8533
100 Canada 11943 A 8533 8532
101 Canada 11944 G 8533 8532
102 Canada 11945 T 8533 8533
103 Canada 11946 T 8533 8533
104 Canada 11947 A 8533 8533
105 Canada 11948 C 8533 8533
106 Canada 11949 A 8533 8533
107 Canada 11950 C T 8533 8532 His3895His
108 Canada 11951 A 8533 8533
109 Canada 11952 A 8533 8533
110 Canada 11953 T 8533 8533
111 Canada 11954 G 8533 8533
112 Canada 11955 A 8533 8533
113 Canada 11956 C T 8533 8521 Asp3897Asp
114 Canada 11957 A 8533 8533
115 Canada 11958 T 8533 8533
116 Canada 11959 T 8533 8533
117 Canada 11960 C 8533 8533
118 Canada 11961 T 8533 8533
119 Canada 11962 C T 8533 8528 Leu3899Leu
120 Canada 11963 T 8533 8533
121 Canada 11964 T 8533 8533
122 Canada 11965 A 8533 8533
123 Canada 11966 G 8533 8533
124 Canada 11967 C T 8533 8513 Ala3901Val
125 Canada 11968 T 8533 8533
126 Canada 11969 A 8533 8533
127 Canada 11970 A 8533 8533
128 Canada 11971 A 8533 8533
129 Canada 11972 G 8533 8532
130 Canada 11973 A 8533 8533
131 Canada 11974 T 8533 8533
132 Canada 11975 A 8533 8533
133 Canada 11976 C T 8533 8532 Thr3904Ile
134 Canada 11977 T 8533 8533
135 Canada 11978 A 8533 8533
136 Canada 11979 C 8533 8533
137 Canada 11980 T 8533 8533
138 Canada 11981 G 8533 8533
139 Canada 11982 A 8533 8533
140 Canada 11983 A 8533 8533
141 Canada 11984 G 8533 8533
142 Canada 11985 C 8533 8533
143 Canada 11986 C T,A 8533 8524 Ala3907Ala-p.Ala3907Ala
144 Canada 11987 T 8533 8533
145 Canada 11988 T 8533 8533
146 Canada 11989 T 8533 8533
147 Canada 11990 G 8533 8533
148 Canada 11991 A G 8533 8528 Glu3909Gly
149 Canada 11992 A 8533 8533
150 Canada 11993 A 8533 8533
151 Canada 11994 A 8533 8533
152 Canada 11995 A 8533 8533
153 Canada 11996 A 8533 8533
154 Canada 11997 T 8533 8533
155 Canada 11998 G T 8533 8526 Met3911Ile
156 Canada 11999 G 8533 8533
157 Canada 12000 T 8533 8533
158 Canada 12001 T 8533 8533
159 Canada 12002 T 8533 8533
160 Canada 12003 C 8533 8533
161 Canada 12004 A 8533 8533
162 Canada 12005 C 8533 8533
163 Canada 12006 T 8533 8533
164 Canada 12007 A 8533 8533
165 Canada 12008 C 8533 8533
166 Canada 12009 T 8533 8533
167 Canada 12010 T 8533 8533
168 Canada 12011 T 8533 8533
169 Canada 12012 C 8533 8533
170 Canada 12013 T 8533 8533
171 Canada 12014 G 8533 8533
172 Canada 12015 T G 8533 8531 Val3917Gly
173 Canada 12016 T 8533 8533
174 Canada 12017 T 8533 8533
175 Canada 12018 T 8533 8533
176 Canada 12019 G 8533 8533
177 Canada 12020 C T 8533 8532 Leu3919Phe
178 Canada 12021 T 8533 8533
179 Canada 12022 T 8533 8533
180 Canada 12023 T 8533 8533
181 Canada 12024 C 8533 8533
182 Canada 12025 C T 8533 8493 Ser3920Ser
183 Canada 12026 A 8533 8533
184 Canada 12027 T 8533 8533
185 Canada 12028 G 8533 8533
186 Canada 12029 C 8533 8533
187 Canada 12030 A 8533 8533
188 Canada 12031 G 8533 8533
189 Canada 12032 G 8533 8533
190 Canada 12033 G 8533 8532
191 Canada 12034 T 8533 8533
192 Canada 12035 G 8533 8533
193 Canada 12036 C 8533 8533
194 Canada 12037 T 8533 8533
195 Canada 12038 G 8533 8533
196 Canada 12039 T 8533 8533
197 Canada 12040 A 8533 8533
198 Canada 12041 G T 8533 8532 Asp3926Tyr
199 Canada 12042 A 8533 8533
200 Canada 12043 C 8533 8533
201 Canada 12044 A 8533 8533
202 Canada 12045 T 8533 8533
203 Canada 12046 A 8533 8533
204 Canada 12047 A 8533 8533
205 Canada 12048 A 8533 8533
206 Canada 12049 C T 8533 8532 Asn3928Asn
207 Canada 12050 A 8533 8533
208 Canada 12051 A 8533 8533
209 Canada 12052 G T 8533 8532 Lys3929Asn
210 Canada 12053 C T 8533 8518 Leu3930Phe
211 Canada 12054 T 8533 8533
212 Canada 12055 T 8533 8533
213 Canada 12056 T 8533 8533
214 Canada 12057 G 8533 8533
215 Canada 12058 T 8533 8533
216 Canada 12059 G 8533 8533
217 Canada 12060 A 8533 8533
218 Canada 12061 A 8533 8533
219 Canada 12062 G 8533 8533
220 Canada 12063 A 8533 8533
221 Canada 12064 A 8533 8533
222 Canada 12065 A 8533 8533
223 Canada 12066 T 8533 8533
224 Canada 12067 G T 8533 8532 Met3934Ile
225 Canada 12068 C 8533 8532
226 Canada 12069 T 8533 8533
227 Canada 12070 G T 8533 8530 Leu3935Leu
228 Canada 12071 G A 8533 8532 Asp3936Asn
229 Canada 12072 A G 8533 8531 Asp3936Gly
230 Canada 12073 C T 8533 8528 Asp3936Asp
231 Canada 12074 A 8533 8533
232 Canada 12075 A G 8533 8531 Asn3937Ser
233 Canada 12076 C T 8533 8530 Asn3937Asn
234 Canada 12077 A 8533 8533
235 Canada 12078 G 8533 8533
236 Canada 12079 G 8533 8533
237 Canada 12080 G 8533 8533
238 Canada 12081 C 8533 8533
239 Canada 12082 A 8533 8533
240 Canada 12083 A 8533 8533
241 Canada 12084 C 8533 8533
242 Canada 12085 C T 8533 8532 Thr3940Thr
243 Canada 12086 T 8533 8533
244 Canada 12087 T 8533 8533
245 Canada 12088 A 8533 8533
246 Canada 12089 C 8533 8533
247 Canada 12090 A 8533 8533
248 Canada 12091 A 8533 8533