National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cameroon 11843 T 20 20
1 Cameroon 11844 C 20 20
2 Cameroon 11845 T 20 20
3 Cameroon 11846 A 20 20
4 Cameroon 11847 A 20 20
5 Cameroon 11848 A 20 20
6 Cameroon 11849 A 20 20
7 Cameroon 11850 T 20 20
8 Cameroon 11851 G 20 20
9 Cameroon 11852 T 20 20
10 Cameroon 11853 C 20 20
11 Cameroon 11854 A 20 20
12 Cameroon 11855 G 20 20
13 Cameroon 11856 A 20 20
14 Cameroon 11857 T 20 20
15 Cameroon 11858 G 21 21
16 Cameroon 11859 T 21 21
17 Cameroon 11860 A 21 21
18 Cameroon 11861 A 21 21
19 Cameroon 11862 A 21 21
20 Cameroon 11863 G 21 21
21 Cameroon 11864 T 21 21
22 Cameroon 11865 G 21 21
23 Cameroon 11866 C 21 21
24 Cameroon 11867 A 21 21
25 Cameroon 11868 C 21 21
26 Cameroon 11869 A 21 21
27 Cameroon 11870 T 21 21
28 Cameroon 11871 C 21 21
29 Cameroon 11872 A 21 21
30 Cameroon 11873 G 21 21
31 Cameroon 11874 T 21 21
32 Cameroon 11875 A 21 21
33 Cameroon 11876 G 21 21
34 Cameroon 11877 T 21 21
35 Cameroon 11878 C 21 21
36 Cameroon 11879 T 21 21
37 Cameroon 11880 T 21 21
38 Cameroon 11881 A 21 21
39 Cameroon 11882 C 21 21
40 Cameroon 11883 T 21 21
41 Cameroon 11884 C 21 21
42 Cameroon 11885 T 21 21
43 Cameroon 11886 C 21 21
44 Cameroon 11887 A 21 21
45 Cameroon 11888 G 21 21
46 Cameroon 11889 T 21 21
47 Cameroon 11890 T 21 21
48 Cameroon 11891 T 21 21
49 Cameroon 11892 T 21 21
50 Cameroon 11893 G 21 21
51 Cameroon 11894 C 21 21
52 Cameroon 11895 A 21 21
53 Cameroon 11896 A 21 21
54 Cameroon 11897 C 21 21
55 Cameroon 11898 A 21 21
56 Cameroon 11899 A 21 21
57 Cameroon 11900 C 21 21
58 Cameroon 11901 T 21 21
59 Cameroon 11902 C 21 21
60 Cameroon 11903 A 21 21
61 Cameroon 11904 G 21 21
62 Cameroon 11905 A 21 21
63 Cameroon 11906 G 21 21
64 Cameroon 11907 T 21 21
65 Cameroon 11908 A 21 21
66 Cameroon 11909 G 21 21
67 Cameroon 11910 A 21 21
68 Cameroon 11911 A 21 21
69 Cameroon 11912 T 21 21
70 Cameroon 11913 C 21 21
71 Cameroon 11914 A 21 21
72 Cameroon 11915 T 21 21
73 Cameroon 11916 C 21 21
74 Cameroon 11917 A 21 21
75 Cameroon 11918 T 21 21
76 Cameroon 11919 C 21 21
77 Cameroon 11920 T 21 21
78 Cameroon 11921 A 21 21
79 Cameroon 11922 A 21 21
80 Cameroon 11923 A 21 21
81 Cameroon 11924 T 22 22
82 Cameroon 11925 T 22 22
83 Cameroon 11926 G 22 22
84 Cameroon 11927 T 22 22
85 Cameroon 11928 G 22 22
86 Cameroon 11929 G 22 22
87 Cameroon 11930 G 22 22
88 Cameroon 11931 C 22 22
89 Cameroon 11932 T 22 22
90 Cameroon 11933 C 22 22
91 Cameroon 11934 A 22 22
92 Cameroon 11935 A 22 22
93 Cameroon 11936 T 22 22
94 Cameroon 11937 G 22 22
95 Cameroon 11938 T 22 22
96 Cameroon 11939 G 22 22
97 Cameroon 11940 T 22 22
98 Cameroon 11941 C 22 22
99 Cameroon 11942 C 22 22
100 Cameroon 11943 A 22 22
101 Cameroon 11944 G 22 22
102 Cameroon 11945 T 22 22
103 Cameroon 11946 T 22 22
104 Cameroon 11947 A 22 22
105 Cameroon 11948 C 22 22
106 Cameroon 11949 A 22 22
107 Cameroon 11950 C 22 22
108 Cameroon 11951 A 22 22
109 Cameroon 11952 A 22 22
110 Cameroon 11953 T 22 22
111 Cameroon 11954 G 22 22
112 Cameroon 11955 A 22 22
113 Cameroon 11956 C 22 22
114 Cameroon 11957 A 22 22
115 Cameroon 11958 T 22 22
116 Cameroon 11959 T 22 22
117 Cameroon 11960 C 22 22
118 Cameroon 11961 T 22 22
119 Cameroon 11962 C 22 22
120 Cameroon 11963 T 22 22
121 Cameroon 11964 T 22 22
122 Cameroon 11965 A 22 22
123 Cameroon 11966 G 22 22
124 Cameroon 11967 C 22 22
125 Cameroon 11968 T 22 22
126 Cameroon 11969 A 22 22
127 Cameroon 11970 A 22 22
128 Cameroon 11971 A 22 22
129 Cameroon 11972 G 22 22
130 Cameroon 11973 A 22 22
131 Cameroon 11974 T 22 22
132 Cameroon 11975 A 22 22
133 Cameroon 11976 C 22 22
134 Cameroon 11977 T 22 22
135 Cameroon 11978 A 22 22
136 Cameroon 11979 C 22 22
137 Cameroon 11980 T 22 22
138 Cameroon 11981 G 22 22
139 Cameroon 11982 A 22 22
140 Cameroon 11983 A 22 22
141 Cameroon 11984 G 22 22
142 Cameroon 11985 C 22 22
143 Cameroon 11986 C 22 22
144 Cameroon 11987 T 22 22
145 Cameroon 11988 T 22 22
146 Cameroon 11989 T 22 22
147 Cameroon 11990 G 22 22
148 Cameroon 11991 A 22 22
149 Cameroon 11992 A 22 22
150 Cameroon 11993 A 22 22
151 Cameroon 11994 A 22 22
152 Cameroon 11995 A 22 22
153 Cameroon 11996 A 22 22
154 Cameroon 11997 T 22 22
155 Cameroon 11998 G 22 22
156 Cameroon 11999 G 22 22
157 Cameroon 12000 T 22 22
158 Cameroon 12001 T 22 22
159 Cameroon 12002 T 22 22
160 Cameroon 12003 C 22 22
161 Cameroon 12004 A 22 22
162 Cameroon 12005 C 22 22
163 Cameroon 12006 T 22 22
164 Cameroon 12007 A 22 22
165 Cameroon 12008 C 22 22
166 Cameroon 12009 T 22 22
167 Cameroon 12010 T 22 22
168 Cameroon 12011 T 22 22
169 Cameroon 12012 C 22 22
170 Cameroon 12013 T 22 22
171 Cameroon 12014 G 22 22
172 Cameroon 12015 T 22 22
173 Cameroon 12016 T 22 22
174 Cameroon 12017 T 22 22
175 Cameroon 12018 T 22 22
176 Cameroon 12019 G 22 22
177 Cameroon 12020 C 22 22
178 Cameroon 12021 T 21 21
179 Cameroon 12022 T 21 21
180 Cameroon 12023 T 21 21
181 Cameroon 12024 C 21 21
182 Cameroon 12025 C 21 21
183 Cameroon 12026 A 21 21
184 Cameroon 12027 T 21 21
185 Cameroon 12028 G 21 21
186 Cameroon 12029 C 21 21
187 Cameroon 12030 A 21 21
188 Cameroon 12031 G 21 21
189 Cameroon 12032 G 21 21
190 Cameroon 12033 G 21 21
191 Cameroon 12034 T 21 21
192 Cameroon 12035 G 21 21
193 Cameroon 12036 C 21 21
194 Cameroon 12037 T 21 21
195 Cameroon 12038 G 21 21
196 Cameroon 12039 T 21 21
197 Cameroon 12040 A 21 21
198 Cameroon 12041 G 21 21
199 Cameroon 12042 A 20 20
200 Cameroon 12043 C 20 20
201 Cameroon 12044 A 20 20
202 Cameroon 12045 T 20 20
203 Cameroon 12046 A 20 20
204 Cameroon 12047 A 20 20
205 Cameroon 12048 A 20 20
206 Cameroon 12049 C 20 20
207 Cameroon 12050 A 20 20
208 Cameroon 12051 A 20 20
209 Cameroon 12052 G 20 20
210 Cameroon 12053 C 20 20
211 Cameroon 12054 T 20 20
212 Cameroon 12055 T 20 20
213 Cameroon 12056 T 20 20
214 Cameroon 12057 G 20 20
215 Cameroon 12058 T 20 20
216 Cameroon 12059 G 20 20
217 Cameroon 12060 A 20 20
218 Cameroon 12061 A 20 20
219 Cameroon 12062 G 20 20
220 Cameroon 12063 A 20 20
221 Cameroon 12064 A 20 20
222 Cameroon 12065 A 20 20
223 Cameroon 12066 T 20 20
224 Cameroon 12067 G 20 20
225 Cameroon 12068 C 20 20
226 Cameroon 12069 T 20 20
227 Cameroon 12070 G 20 20
228 Cameroon 12071 G 20 20
229 Cameroon 12072 A 20 20
230 Cameroon 12073 C 20 20
231 Cameroon 12074 A 20 20
232 Cameroon 12075 A 20 20
233 Cameroon 12076 C 20 20
234 Cameroon 12077 A 20 20
235 Cameroon 12078 G 20 20
236 Cameroon 12079 G 20 20
237 Cameroon 12080 G 20 20
238 Cameroon 12081 C 20 20
239 Cameroon 12082 A 20 20
240 Cameroon 12083 A 20 20
241 Cameroon 12084 C 20 20
242 Cameroon 12085 C 20 20
243 Cameroon 12086 T 20 20
244 Cameroon 12087 T 20 20
245 Cameroon 12088 A 20 20
246 Cameroon 12089 C 20 20
247 Cameroon 12090 A 20 20
248 Cameroon 12091 A 20 20