National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3           1                        
H   3                                    
I   6                                    
K   18                           1        
L   45                   1                
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                 1  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Cambodia 11843 T 4 4
1 Cambodia 11844 C 4 4
2 Cambodia 11845 T 4 4
3 Cambodia 11846 A 4 4
4 Cambodia 11847 A 4 4
5 Cambodia 11848 A 4 4
6 Cambodia 11849 A 4 4
7 Cambodia 11850 T 4 4
8 Cambodia 11851 G 4 4
9 Cambodia 11852 T 4 4
10 Cambodia 11853 C 4 4
11 Cambodia 11854 A 4 4
12 Cambodia 11855 G 4 4
13 Cambodia 11856 A 4 4
14 Cambodia 11857 T 4 4
15 Cambodia 11858 G 4 4
16 Cambodia 11859 T 4 4
17 Cambodia 11860 A 4 4
18 Cambodia 11861 A 4 4
19 Cambodia 11862 A 4 4
20 Cambodia 11863 G 4 4
21 Cambodia 11864 T 4 4
22 Cambodia 11865 G 4 4
23 Cambodia 11866 C 4 4
24 Cambodia 11867 A 4 4
25 Cambodia 11868 C 4 4
26 Cambodia 11869 A 4 4
27 Cambodia 11870 T 4 4
28 Cambodia 11871 C 4 4
29 Cambodia 11872 A 4 4
30 Cambodia 11873 G 4 4
31 Cambodia 11874 T 4 4
32 Cambodia 11875 A 4 4
33 Cambodia 11876 G 4 4
34 Cambodia 11877 T 4 4
35 Cambodia 11878 C 4 4
36 Cambodia 11879 T 4 4
37 Cambodia 11880 T 4 4
38 Cambodia 11881 A 4 4
39 Cambodia 11882 C 4 4
40 Cambodia 11883 T 4 4
41 Cambodia 11884 C 4 4
42 Cambodia 11885 T 4 4
43 Cambodia 11886 C 4 4
44 Cambodia 11887 A 4 4
45 Cambodia 11888 G 4 4
46 Cambodia 11889 T 4 4
47 Cambodia 11890 T 4 4
48 Cambodia 11891 T 4 4
49 Cambodia 11892 T 4 4
50 Cambodia 11893 G 4 4
51 Cambodia 11894 C 4 4
52 Cambodia 11895 A 4 4
53 Cambodia 11896 A 4 4
54 Cambodia 11897 C 4 4
55 Cambodia 11898 A 4 4
56 Cambodia 11899 A 4 4
57 Cambodia 11900 C 4 4
58 Cambodia 11901 T 4 4
59 Cambodia 11902 C 4 4
60 Cambodia 11903 A 4 4
61 Cambodia 11904 G 4 4
62 Cambodia 11905 A 4 4
63 Cambodia 11906 G 4 4
64 Cambodia 11907 T 4 4
65 Cambodia 11908 A 4 4
66 Cambodia 11909 G 4 4
67 Cambodia 11910 A 4 4
68 Cambodia 11911 A 4 4
69 Cambodia 11912 T 4 4
70 Cambodia 11913 C 4 4
71 Cambodia 11914 A 4 4
72 Cambodia 11915 T 4 4
73 Cambodia 11916 C 4 4
74 Cambodia 11917 A 4 4
75 Cambodia 11918 T 4 4
76 Cambodia 11919 C 4 4
77 Cambodia 11920 T 4 4
78 Cambodia 11921 A 4 4
79 Cambodia 11922 A 4 4
80 Cambodia 11923 A 4 4
81 Cambodia 11924 T 4 4
82 Cambodia 11925 T 4 4
83 Cambodia 11926 G 4 4
84 Cambodia 11927 T 4 4
85 Cambodia 11928 G 4 4
86 Cambodia 11929 G 4 4
87 Cambodia 11930 G 4 4
88 Cambodia 11931 C 4 4
89 Cambodia 11932 T 4 4
90 Cambodia 11933 C 4 4
91 Cambodia 11934 A 4 4
92 Cambodia 11935 A 4 4
93 Cambodia 11936 T 4 4
94 Cambodia 11937 G 4 4
95 Cambodia 11938 T 4 4
96 Cambodia 11939 G 4 4
97 Cambodia 11940 T 4 4
98 Cambodia 11941 C T 4 2 Val3892Val
99 Cambodia 11942 C 4 4
100 Cambodia 11943 A 4 4
101 Cambodia 11944 G 4 4
102 Cambodia 11945 T 4 4
103 Cambodia 11946 T 4 4
104 Cambodia 11947 A 4 4
105 Cambodia 11948 C 4 4
106 Cambodia 11949 A 4 4
107 Cambodia 11950 C 4 4
108 Cambodia 11951 A 4 4
109 Cambodia 11952 A 4 4
110 Cambodia 11953 T 4 4
111 Cambodia 11954 G 4 4
112 Cambodia 11955 A 4 4
113 Cambodia 11956 C 4 4
114 Cambodia 11957 A 4 4
115 Cambodia 11958 T 4 4
116 Cambodia 11959 T 4 4
117 Cambodia 11960 C 4 4
118 Cambodia 11961 T 4 4
119 Cambodia 11962 C 4 4
120 Cambodia 11963 T 4 4
121 Cambodia 11964 T 4 4
122 Cambodia 11965 A 4 4
123 Cambodia 11966 G 4 4
124 Cambodia 11967 C 4 4
125 Cambodia 11968 T 4 4
126 Cambodia 11969 A 4 4
127 Cambodia 11970 A 4 4
128 Cambodia 11971 A 4 4
129 Cambodia 11972 G 4 4
130 Cambodia 11973 A 4 4
131 Cambodia 11974 T 4 4
132 Cambodia 11975 A 4 4
133 Cambodia 11976 C 4 4
134 Cambodia 11977 T 4 4
135 Cambodia 11978 A 4 4
136 Cambodia 11979 C 4 4
137 Cambodia 11980 T 4 4
138 Cambodia 11981 G 4 4
139 Cambodia 11982 A 4 4
140 Cambodia 11983 A 4 4
141 Cambodia 11984 G 4 4
142 Cambodia 11985 C 4 4
143 Cambodia 11986 C 4 4
144 Cambodia 11987 T 4 4
145 Cambodia 11988 T 4 4
146 Cambodia 11989 T 4 4
147 Cambodia 11990 G 4 4
148 Cambodia 11991 A 4 4
149 Cambodia 11992 A 4 4
150 Cambodia 11993 A 4 4
151 Cambodia 11994 A G 4 2 Lys3910Arg
152 Cambodia 11995 A 4 4
153 Cambodia 11996 A 4 4
154 Cambodia 11997 T 4 4
155 Cambodia 11998 G 4 4
156 Cambodia 11999 G 4 4
157 Cambodia 12000 T 4 4
158 Cambodia 12001 T 4 4
159 Cambodia 12002 T 4 4
160 Cambodia 12003 C 4 4
161 Cambodia 12004 A 4 4
162 Cambodia 12005 C 4 4
163 Cambodia 12006 T 4 4
164 Cambodia 12007 A 4 4
165 Cambodia 12008 C 4 4
166 Cambodia 12009 T 4 4
167 Cambodia 12010 T 4 4
168 Cambodia 12011 T 4 4
169 Cambodia 12012 C 4 4
170 Cambodia 12013 T 4 4
171 Cambodia 12014 G 4 4
172 Cambodia 12015 T 4 4
173 Cambodia 12016 T 4 4
174 Cambodia 12017 T 4 4
175 Cambodia 12018 T 4 4
176 Cambodia 12019 G 4 4
177 Cambodia 12020 C 4 4
178 Cambodia 12021 T 4 4
179 Cambodia 12022 T 4 4
180 Cambodia 12023 T 4 4
181 Cambodia 12024 C 4 4
182 Cambodia 12025 C 4 4
183 Cambodia 12026 A 4 4
184 Cambodia 12027 T 4 4
185 Cambodia 12028 G 4 4
186 Cambodia 12029 C 4 4
187 Cambodia 12030 A 4 4
188 Cambodia 12031 G 4 4
189 Cambodia 12032 G 4 4
190 Cambodia 12033 G 4 4
191 Cambodia 12034 T C 4 2 Gly3923Gly
192 Cambodia 12035 G 4 4
193 Cambodia 12036 C 4 4
194 Cambodia 12037 T 4 4
195 Cambodia 12038 G 4 4
196 Cambodia 12039 T 4 4
197 Cambodia 12040 A 4 4
198 Cambodia 12041 G 4 4
199 Cambodia 12042 A 4 4
200 Cambodia 12043 C 4 4
201 Cambodia 12044 A 4 4
202 Cambodia 12045 T 4 4
203 Cambodia 12046 A 4 4
204 Cambodia 12047 A 4 4
205 Cambodia 12048 A 4 4
206 Cambodia 12049 C 4 4
207 Cambodia 12050 A 4 4
208 Cambodia 12051 A 4 4
209 Cambodia 12052 G 4 4
210 Cambodia 12053 C 4 4
211 Cambodia 12054 T 4 4
212 Cambodia 12055 T 4 4
213 Cambodia 12056 T 4 4
214 Cambodia 12057 G 4 4
215 Cambodia 12058 T 4 4
216 Cambodia 12059 G 4 4
217 Cambodia 12060 A 4 4
218 Cambodia 12061 A 4 4
219 Cambodia 12062 G 4 4
220 Cambodia 12063 A 4 4
221 Cambodia 12064 A 4 4
222 Cambodia 12065 A 4 4
223 Cambodia 12066 T 4 4
224 Cambodia 12067 G 4 4
225 Cambodia 12068 C 4 4
226 Cambodia 12069 T 4 4
227 Cambodia 12070 G T 4 2 Leu3935Leu
228 Cambodia 12071 G 4 4
229 Cambodia 12072 A 4 4
230 Cambodia 12073 C 4 4
231 Cambodia 12074 A 4 4
232 Cambodia 12075 A 4 4
233 Cambodia 12076 C 4 4
234 Cambodia 12077 A 4 4
235 Cambodia 12078 G 4 4
236 Cambodia 12079 G 4 4
237 Cambodia 12080 G 4 4
238 Cambodia 12081 C 4 4
239 Cambodia 12082 A 4 4
240 Cambodia 12083 A 4 4
241 Cambodia 12084 C 4 4
242 Cambodia 12085 C 4 4
243 Cambodia 12086 T 4 4
244 Cambodia 12087 T 4 4
245 Cambodia 12088 A 4 4
246 Cambodia 12089 C 4 4
247 Cambodia 12090 A 4 4
248 Cambodia 12091 A 4 4