National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                   1                
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Bulgaria 11843 T 15 15
1 Bulgaria 11844 C 15 15
2 Bulgaria 11845 T 15 15
3 Bulgaria 11846 A 15 15
4 Bulgaria 11847 A 15 15
5 Bulgaria 11848 A 15 15
6 Bulgaria 11849 A 15 15
7 Bulgaria 11850 T 15 15
8 Bulgaria 11851 G 15 15
9 Bulgaria 11852 T 15 15
10 Bulgaria 11853 C 15 15
11 Bulgaria 11854 A 15 15
12 Bulgaria 11855 G 15 15
13 Bulgaria 11856 A 15 15
14 Bulgaria 11857 T 15 15
15 Bulgaria 11858 G 15 15
16 Bulgaria 11859 T 15 15
17 Bulgaria 11860 A 15 15
18 Bulgaria 11861 A 15 15
19 Bulgaria 11862 A 15 15
20 Bulgaria 11863 G 15 15
21 Bulgaria 11864 T 15 15
22 Bulgaria 11865 G 15 15
23 Bulgaria 11866 C 15 15
24 Bulgaria 11867 A 15 15
25 Bulgaria 11868 C 15 15
26 Bulgaria 11869 A 15 15
27 Bulgaria 11870 T 15 15
28 Bulgaria 11871 C 15 15
29 Bulgaria 11872 A 15 15
30 Bulgaria 11873 G 15 15
31 Bulgaria 11874 T 15 15
32 Bulgaria 11875 A 15 15
33 Bulgaria 11876 G 15 15
34 Bulgaria 11877 T 15 15
35 Bulgaria 11878 C 15 15
36 Bulgaria 11879 T 15 15
37 Bulgaria 11880 T 15 15
38 Bulgaria 11881 A 15 15
39 Bulgaria 11882 C 15 15
40 Bulgaria 11883 T 15 15
41 Bulgaria 11884 C 15 15
42 Bulgaria 11885 T 15 15
43 Bulgaria 11886 C 15 15
44 Bulgaria 11887 A 15 15
45 Bulgaria 11888 G 15 15
46 Bulgaria 11889 T 15 15
47 Bulgaria 11890 T 15 15
48 Bulgaria 11891 T 15 15
49 Bulgaria 11892 T 15 15
50 Bulgaria 11893 G 15 15
51 Bulgaria 11894 C 15 15
52 Bulgaria 11895 A 15 15
53 Bulgaria 11896 A 15 15
54 Bulgaria 11897 C 15 15
55 Bulgaria 11898 A 15 15
56 Bulgaria 11899 A 15 15
57 Bulgaria 11900 C 15 15
58 Bulgaria 11901 T 15 15
59 Bulgaria 11902 C 15 15
60 Bulgaria 11903 A 15 15
61 Bulgaria 11904 G 15 15
62 Bulgaria 11905 A 15 15
63 Bulgaria 11906 G 15 15
64 Bulgaria 11907 T 15 15
65 Bulgaria 11908 A 15 15
66 Bulgaria 11909 G 15 15
67 Bulgaria 11910 A 15 15
68 Bulgaria 11911 A 15 15
69 Bulgaria 11912 T 15 15
70 Bulgaria 11913 C 15 15
71 Bulgaria 11914 A 15 15
72 Bulgaria 11915 T 15 15
73 Bulgaria 11916 C 15 15
74 Bulgaria 11917 A 15 15
75 Bulgaria 11918 T 15 15
76 Bulgaria 11919 C 15 15
77 Bulgaria 11920 T 15 15
78 Bulgaria 11921 A 15 15
79 Bulgaria 11922 A 15 15
80 Bulgaria 11923 A 15 15
81 Bulgaria 11924 T 15 15
82 Bulgaria 11925 T 15 15
83 Bulgaria 11926 G 15 15
84 Bulgaria 11927 T 15 15
85 Bulgaria 11928 G 15 15
86 Bulgaria 11929 G 15 15
87 Bulgaria 11930 G 15 15
88 Bulgaria 11931 C 15 15
89 Bulgaria 11932 T 15 15
90 Bulgaria 11933 C 15 15
91 Bulgaria 11934 A 15 15
92 Bulgaria 11935 A 15 15
93 Bulgaria 11936 T 15 15
94 Bulgaria 11937 G 15 15
95 Bulgaria 11938 T 15 15
96 Bulgaria 11939 G 15 15
97 Bulgaria 11940 T 15 15
98 Bulgaria 11941 C 15 15
99 Bulgaria 11942 C 15 15
100 Bulgaria 11943 A 15 15
101 Bulgaria 11944 G 15 15
102 Bulgaria 11945 T 15 15
103 Bulgaria 11946 T 15 15
104 Bulgaria 11947 A 15 15
105 Bulgaria 11948 C 15 15
106 Bulgaria 11949 A 15 15
107 Bulgaria 11950 C 15 15
108 Bulgaria 11951 A 15 15
109 Bulgaria 11952 A 15 15
110 Bulgaria 11953 T 15 15
111 Bulgaria 11954 G 15 15
112 Bulgaria 11955 A 15 15
113 Bulgaria 11956 C 15 15
114 Bulgaria 11957 A 15 15
115 Bulgaria 11958 T 15 15
116 Bulgaria 11959 T 15 15
117 Bulgaria 11960 C 15 15
118 Bulgaria 11961 T 15 15
119 Bulgaria 11962 C 15 15
120 Bulgaria 11963 T 15 15
121 Bulgaria 11964 T 15 15
122 Bulgaria 11965 A 15 15
123 Bulgaria 11966 G 15 15
124 Bulgaria 11967 C 15 15
125 Bulgaria 11968 T 15 15
126 Bulgaria 11969 A 15 15
127 Bulgaria 11970 A 15 15
128 Bulgaria 11971 A 15 15
129 Bulgaria 11972 G 15 15
130 Bulgaria 11973 A 15 15
131 Bulgaria 11974 T 15 15
132 Bulgaria 11975 A 15 15
133 Bulgaria 11976 C 15 15
134 Bulgaria 11977 T 15 15
135 Bulgaria 11978 A 15 15
136 Bulgaria 11979 C 15 15
137 Bulgaria 11980 T 15 15
138 Bulgaria 11981 G 15 15
139 Bulgaria 11982 A 15 15
140 Bulgaria 11983 A 15 15
141 Bulgaria 11984 G 15 15
142 Bulgaria 11985 C 15 15
143 Bulgaria 11986 C 15 15
144 Bulgaria 11987 T 15 15
145 Bulgaria 11988 T 15 15
146 Bulgaria 11989 T 15 15
147 Bulgaria 11990 G 15 15
148 Bulgaria 11991 A 15 15
149 Bulgaria 11992 A 15 15
150 Bulgaria 11993 A 15 15
151 Bulgaria 11994 A 15 15
152 Bulgaria 11995 A 15 15
153 Bulgaria 11996 A 15 15
154 Bulgaria 11997 T 15 15
155 Bulgaria 11998 G 15 15
156 Bulgaria 11999 G 15 15
157 Bulgaria 12000 T 15 15
158 Bulgaria 12001 T 15 15
159 Bulgaria 12002 T 15 15
160 Bulgaria 12003 C 15 15
161 Bulgaria 12004 A 15 15
162 Bulgaria 12005 C 15 15
163 Bulgaria 12006 T 15 15
164 Bulgaria 12007 A 15 15
165 Bulgaria 12008 C 15 15
166 Bulgaria 12009 T 15 15
167 Bulgaria 12010 T 15 15
168 Bulgaria 12011 T 15 15
169 Bulgaria 12012 C 15 15
170 Bulgaria 12013 T 15 15
171 Bulgaria 12014 G 15 15
172 Bulgaria 12015 T 15 15
173 Bulgaria 12016 T 15 15
174 Bulgaria 12017 T 15 15
175 Bulgaria 12018 T 15 15
176 Bulgaria 12019 G 15 15
177 Bulgaria 12020 C 15 15
178 Bulgaria 12021 T 15 15
179 Bulgaria 12022 T 15 15
180 Bulgaria 12023 T 15 15
181 Bulgaria 12024 C 15 15
182 Bulgaria 12025 C 15 15
183 Bulgaria 12026 A 15 15
184 Bulgaria 12027 T 15 15
185 Bulgaria 12028 G 15 15
186 Bulgaria 12029 C 15 15
187 Bulgaria 12030 A 15 15
188 Bulgaria 12031 G 15 15
189 Bulgaria 12032 G 15 15
190 Bulgaria 12033 G 15 15
191 Bulgaria 12034 T 15 15
192 Bulgaria 12035 G 15 15
193 Bulgaria 12036 C 15 15
194 Bulgaria 12037 T 15 15
195 Bulgaria 12038 G 15 15
196 Bulgaria 12039 T 15 15
197 Bulgaria 12040 A 15 15
198 Bulgaria 12041 G 15 15
199 Bulgaria 12042 A 15 15
200 Bulgaria 12043 C 15 15
201 Bulgaria 12044 A 15 15
202 Bulgaria 12045 T 15 15
203 Bulgaria 12046 A 15 15
204 Bulgaria 12047 A 15 15
205 Bulgaria 12048 A 15 15
206 Bulgaria 12049 C 15 15
207 Bulgaria 12050 A 15 15
208 Bulgaria 12051 A 15 15
209 Bulgaria 12052 G 15 15
210 Bulgaria 12053 C 15 15
211 Bulgaria 12054 T 15 15
212 Bulgaria 12055 T 15 15
213 Bulgaria 12056 T 15 15
214 Bulgaria 12057 G 15 15
215 Bulgaria 12058 T 15 15
216 Bulgaria 12059 G 15 15
217 Bulgaria 12060 A 15 15
218 Bulgaria 12061 A 15 15
219 Bulgaria 12062 G 15 15
220 Bulgaria 12063 A 15 15
221 Bulgaria 12064 A 15 15
222 Bulgaria 12065 A 15 15
223 Bulgaria 12066 T 15 15
224 Bulgaria 12067 G 15 15
225 Bulgaria 12068 C T 15 14 Leu3935Leu
226 Bulgaria 12069 T 15 15
227 Bulgaria 12070 G 15 15
228 Bulgaria 12071 G 15 15
229 Bulgaria 12072 A 15 15
230 Bulgaria 12073 C 15 15
231 Bulgaria 12074 A 15 15
232 Bulgaria 12075 A 15 15
233 Bulgaria 12076 C 15 15
234 Bulgaria 12077 A 15 15
235 Bulgaria 12078 G 15 15
236 Bulgaria 12079 G 15 15
237 Bulgaria 12080 G 15 15
238 Bulgaria 12081 C 15 15
239 Bulgaria 12082 A 15 15
240 Bulgaria 12083 A 15 15
241 Bulgaria 12084 C 15 15
242 Bulgaria 12085 C 15 15
243 Bulgaria 12086 T 15 15
244 Bulgaria 12087 T 15 15
245 Bulgaria 12088 A 15 15
246 Bulgaria 12089 C 15 15
247 Bulgaria 12090 A 15 15
248 Bulgaria 12091 A 15 15