National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9   1                                
D   15     2                              
E   15     1                              
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45         2     1   6                
M   12               1                    
N   9                       2            
Q   18                                    
R   6                                    
S   30         1         2                
T   12               2                    
V   27               1                 1  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Brazil 11843 T 2194 2194
1 Brazil 11844 C 2194 2194
2 Brazil 11845 T 2194 2193
3 Brazil 11846 A 2194 2194
4 Brazil 11847 A 2194 2194
5 Brazil 11848 A 2194 2194
6 Brazil 11849 A 2194 2194
7 Brazil 11850 T 2194 2194
8 Brazil 11851 G 2194 2194
9 Brazil 11852 T 2194 2194
10 Brazil 11853 C 2194 2194
11 Brazil 11854 A 2194 2194
12 Brazil 11855 G 2194 2194
13 Brazil 11856 A 2194 2194
14 Brazil 11857 T 2194 2194
15 Brazil 11858 G 2194 2194
16 Brazil 11859 T 2194 2194
17 Brazil 11860 A 2194 2194
18 Brazil 11861 A 2194 2194
19 Brazil 11862 A 2194 2194
20 Brazil 11863 G 2194 2194
21 Brazil 11864 T 2195 2195
22 Brazil 11865 G 2195 2195
23 Brazil 11866 C T 2195 2187 Cys3867Cys
24 Brazil 11867 A 2195 2195
25 Brazil 11868 C 2195 2195
26 Brazil 11869 A 2195 2195
27 Brazil 11870 T 2195 2195
28 Brazil 11871 C 2195 2195
29 Brazil 11872 A 2195 2195
30 Brazil 11873 G 2195 2195
31 Brazil 11874 T 2195 2195
32 Brazil 11875 A 2195 2195
33 Brazil 11876 G 2195 2195
34 Brazil 11877 T 2195 2195
35 Brazil 11878 C 2195 2195
36 Brazil 11879 T 2195 2195
37 Brazil 11880 T 2195 2195
38 Brazil 11881 A 2195 2195
39 Brazil 11882 C 2195 2195
40 Brazil 11883 T 2195 2195
41 Brazil 11884 C T 2195 2194 Leu3873Leu
42 Brazil 11885 T 2195 2195
43 Brazil 11886 C 2195 2195
44 Brazil 11887 A 2195 2195
45 Brazil 11888 G 2195 2195
46 Brazil 11889 T 2195 2195
47 Brazil 11890 T 2197 2197
48 Brazil 11891 T 2197 2197
49 Brazil 11892 T 2197 2197
50 Brazil 11893 G 2197 2197
51 Brazil 11894 C 2197 2197
52 Brazil 11895 A 2197 2197
53 Brazil 11896 A 2197 2197
54 Brazil 11897 C 2197 2197
55 Brazil 11898 A 2197 2197
56 Brazil 11899 A 2197 2197
57 Brazil 11900 C 2197 2197
58 Brazil 11901 T 2197 2197
59 Brazil 11902 C 2197 2197
60 Brazil 11903 A 2197 2197
61 Brazil 11904 G 2197 2197
62 Brazil 11905 A 2197 2197
63 Brazil 11906 G 2197 2197
64 Brazil 11907 T 2197 2197
65 Brazil 11908 A 2197 2197
66 Brazil 11909 G 2197 2197
67 Brazil 11910 A 2197 2197
68 Brazil 11911 A 2197 2197
69 Brazil 11912 T 2197 2197
70 Brazil 11913 C 2197 2197
71 Brazil 11914 A 2197 2197
72 Brazil 11915 T 2197 2197
73 Brazil 11916 C T 2197 2189 Ser3884Leu
74 Brazil 11917 A 2197 2197
75 Brazil 11918 T 2197 2197
76 Brazil 11919 C T 2197 2196 Ser3885Phe
77 Brazil 11920 T 2197 2197
78 Brazil 11921 A 2197 2197
79 Brazil 11922 A 2197 2197
80 Brazil 11923 A 2197 2197
81 Brazil 11924 T 2197 2197
82 Brazil 11925 T 2197 2197
83 Brazil 11926 G 2197 2197
84 Brazil 11927 T 2197 2197
85 Brazil 11928 G 2196 2196
86 Brazil 11929 G 2196 2196
87 Brazil 11930 G 2196 2196
88 Brazil 11931 C 2196 2196
89 Brazil 11932 T 2196 2196
90 Brazil 11933 C 2196 2196
91 Brazil 11934 A 2196 2196
92 Brazil 11935 A 2196 2196
93 Brazil 11936 T 2196 2196
94 Brazil 11937 G 2196 2196
95 Brazil 11938 T 2196 2196
96 Brazil 11939 G 2196 2196
97 Brazil 11940 T 2196 2196
98 Brazil 11941 C T 2196 2194 Val3892Val
99 Brazil 11942 C 2196 2195
100 Brazil 11943 A 2196 2195
101 Brazil 11944 G 2196 2195
102 Brazil 11945 T 2196 2195
103 Brazil 11946 T 2196 2195
104 Brazil 11947 A G 2196 2192 Leu3894Leu
105 Brazil 11948 C 2196 2195
106 Brazil 11949 A 2196 2195
107 Brazil 11950 C 2195 2194
108 Brazil 11951 A 2195 2194
109 Brazil 11952 A 2195 2194
110 Brazil 11953 T 2195 2193
111 Brazil 11954 G 2195 2193
112 Brazil 11955 A 2195 2193
113 Brazil 11956 C T 2195 2184 Asp3897Asp
114 Brazil 11957 A 2195 2193
115 Brazil 11958 T 2195 2193
116 Brazil 11959 T 2195 2193
117 Brazil 11960 C 2195 2193
118 Brazil 11961 T 2195 2193
119 Brazil 11962 C 2195 2193
120 Brazil 11963 T C 2195 2192 Leu3900Leu
121 Brazil 11964 T 2195 2193
122 Brazil 11965 A 2195 2194
123 Brazil 11966 G 2195 2194
124 Brazil 11967 C 2195 2194
125 Brazil 11968 T 2195 2194
126 Brazil 11969 A 2194 2193
127 Brazil 11970 A 2194 2193
128 Brazil 11971 A 2194 2193
129 Brazil 11972 G 2193 2192
130 Brazil 11973 A 2193 2192
131 Brazil 11974 T 2193 2192
132 Brazil 11975 A 2193 2192
133 Brazil 11976 C 2193 2192
134 Brazil 11977 T 2193 2192
135 Brazil 11978 A 2193 2192
136 Brazil 11979 C T 2193 2191 Thr3905Ile
137 Brazil 11980 T 2193 2192
138 Brazil 11981 G 2193 2192
139 Brazil 11982 A 2193 2192
140 Brazil 11983 A 2193 2192
141 Brazil 11984 G 2193 2191
142 Brazil 11985 C 2193 2191
143 Brazil 11986 C 2193 2191
144 Brazil 11987 T 2193 2191
145 Brazil 11988 T 2193 2191
146 Brazil 11989 T 2193 2191
147 Brazil 11990 G 2193 2191
148 Brazil 11991 A 2193 2191
149 Brazil 11992 A 2193 2191
150 Brazil 11993 A 2193 2191
151 Brazil 11994 A 2193 2191
152 Brazil 11995 A 2193 2191
153 Brazil 11996 A 2193 2191
154 Brazil 11997 T 2193 2190
155 Brazil 11998 G 2193 2190
156 Brazil 11999 G 2193 2190
157 Brazil 12000 T 2193 2190
158 Brazil 12001 T 2193 2190
159 Brazil 12002 T 2193 2190
160 Brazil 12003 C T 2193 2189 Ser3913Leu
161 Brazil 12004 A 2193 2191
162 Brazil 12005 C T 2193 2188 Leu3914Leu
163 Brazil 12006 T 2193 2192
164 Brazil 12007 A 2193 2192
165 Brazil 12008 C T 2193 2191 Leu3915Phe
166 Brazil 12009 T 2193 2192
167 Brazil 12010 T 2193 2192
168 Brazil 12011 T 2193 2192
169 Brazil 12012 C 2193 2192
170 Brazil 12013 T 2193 2192
171 Brazil 12014 G 2193 2192
172 Brazil 12015 T 2193 2192
173 Brazil 12016 T 2193 2192
174 Brazil 12017 T 2193 2192
175 Brazil 12018 T 2193 2192
176 Brazil 12019 G 2193 2192
177 Brazil 12020 C A 2193 2191 Leu3919Ile
178 Brazil 12021 T 2193 2193
179 Brazil 12022 T 2193 2193
180 Brazil 12023 T 2193 2193
181 Brazil 12024 C 2193 2193
182 Brazil 12025 C 2193 2193
183 Brazil 12026 A 2193 2192
184 Brazil 12027 T 2193 2192
185 Brazil 12028 G 2193 2193
186 Brazil 12029 C 2193 2193
187 Brazil 12030 A 2193 2193
188 Brazil 12031 G 2193 2193
189 Brazil 12032 G 2193 2193
190 Brazil 12033 G 2193 2193
191 Brazil 12034 T 2193 2193
192 Brazil 12035 G 2193 2193
193 Brazil 12036 C 2193 2193
194 Brazil 12037 T 2193 2193
195 Brazil 12038 G A 2193 2192 Val3925Ile
196 Brazil 12039 T 2193 2193
197 Brazil 12040 A 2193 2193
198 Brazil 12041 G 2193 2193
199 Brazil 12042 A 2193 2193
200 Brazil 12043 C 2193 2193
201 Brazil 12044 A 2193 2193
202 Brazil 12045 T 2193 2193
203 Brazil 12046 A 2193 2193
204 Brazil 12047 A 2193 2193
205 Brazil 12048 A 2193 2193
206 Brazil 12049 C T 2193 2192 Asn3928Asn
207 Brazil 12050 A 2193 2193
208 Brazil 12051 A 2193 2193
209 Brazil 12052 G 2193 2193
210 Brazil 12053 C T 2193 1589 Leu3930Phe
211 Brazil 12054 T 2193 2193
212 Brazil 12055 T C 2193 2192 Leu3930Leu
213 Brazil 12056 T 2193 2193
214 Brazil 12057 G 2193 2193
215 Brazil 12058 T 2193 2193
216 Brazil 12059 G 2193 2193
217 Brazil 12060 A 2193 2193
218 Brazil 12061 A 2193 2193
219 Brazil 12062 G 2193 2193
220 Brazil 12063 A 2193 2193
221 Brazil 12064 A T 2193 2192 Glu3933Asp
222 Brazil 12065 A 2193 2193
223 Brazil 12066 T 2193 2193
224 Brazil 12067 G T 2193 2192 Met3934Ile
225 Brazil 12068 C 2193 2193
226 Brazil 12069 T 2193 2193
227 Brazil 12070 G C 2193 2192 Leu3935Leu
228 Brazil 12071 G 2193 2193
229 Brazil 12072 A 2193 2193
230 Brazil 12073 C T 2193 2192 Asp3936Asp
231 Brazil 12074 A 2193 2193
232 Brazil 12075 A 2193 2193
233 Brazil 12076 C T 2193 2190 Asn3937Asn
234 Brazil 12077 A 2193 2193
235 Brazil 12078 G 2193 2193
236 Brazil 12079 G 2193 2193
237 Brazil 12080 G 2193 2193
238 Brazil 12081 C 2193 2193
239 Brazil 12082 A 2193 2193
240 Brazil 12083 A 2193 2193
241 Brazil 12084 C T 2193 2192 Thr3940Ile
242 Brazil 12085 C 2193 2193
243 Brazil 12086 T 2193 2193
244 Brazil 12087 T 2193 2193
245 Brazil 12088 A 2193 2193
246 Brazil 12089 C 2193 2193
247 Brazil 12090 A 2193 2193
248 Brazil 12091 A 2193 2193