National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Botswana 11843 T 13 13
1 Botswana 11844 C 13 13
2 Botswana 11845 T 13 13
3 Botswana 11846 A 13 13
4 Botswana 11847 A 13 13
5 Botswana 11848 A 13 13
6 Botswana 11849 A 13 13
7 Botswana 11850 T 13 13
8 Botswana 11851 G 13 13
9 Botswana 11852 T 13 13
10 Botswana 11853 C 13 13
11 Botswana 11854 A 13 13
12 Botswana 11855 G 13 13
13 Botswana 11856 A 13 13
14 Botswana 11857 T 13 13
15 Botswana 11858 G 13 13
16 Botswana 11859 T 13 13
17 Botswana 11860 A 13 13
18 Botswana 11861 A 13 13
19 Botswana 11862 A 13 13
20 Botswana 11863 G 13 13
21 Botswana 11864 T 13 13
22 Botswana 11865 G 13 13
23 Botswana 11866 C 13 13
24 Botswana 11867 A 13 13
25 Botswana 11868 C 13 13
26 Botswana 11869 A 13 13
27 Botswana 11870 T 13 13
28 Botswana 11871 C 13 13
29 Botswana 11872 A 13 13
30 Botswana 11873 G 13 13
31 Botswana 11874 T 13 13
32 Botswana 11875 A 13 13
33 Botswana 11876 G 13 13
34 Botswana 11877 T 13 13
35 Botswana 11878 C 13 13
36 Botswana 11879 T 13 13
37 Botswana 11880 T 13 13
38 Botswana 11881 A 13 13
39 Botswana 11882 C 13 13
40 Botswana 11883 T 13 13
41 Botswana 11884 C 13 13
42 Botswana 11885 T 13 13
43 Botswana 11886 C 13 13
44 Botswana 11887 A 13 13
45 Botswana 11888 G 13 13
46 Botswana 11889 T 13 13
47 Botswana 11890 T 13 13
48 Botswana 11891 T 13 13
49 Botswana 11892 T 13 13
50 Botswana 11893 G 13 13
51 Botswana 11894 C 13 13
52 Botswana 11895 A 13 13
53 Botswana 11896 A 13 13
54 Botswana 11897 C 13 13
55 Botswana 11898 A 13 13
56 Botswana 11899 A 13 13
57 Botswana 11900 C 13 13
58 Botswana 11901 T 13 13
59 Botswana 11902 C 13 13
60 Botswana 11903 A 13 13
61 Botswana 11904 G 13 13
62 Botswana 11905 A 13 13
63 Botswana 11906 G 13 13
64 Botswana 11907 T 13 13
65 Botswana 11908 A 13 13
66 Botswana 11909 G 13 13
67 Botswana 11910 A 13 13
68 Botswana 11911 A 13 13
69 Botswana 11912 T 13 13
70 Botswana 11913 C 13 13
71 Botswana 11914 A 13 13
72 Botswana 11915 T 13 13
73 Botswana 11916 C 13 13
74 Botswana 11917 A 13 13
75 Botswana 11918 T 13 13
76 Botswana 11919 C 13 13
77 Botswana 11920 T 13 13
78 Botswana 11921 A 13 13
79 Botswana 11922 A 13 13
80 Botswana 11923 A 13 13
81 Botswana 11924 T 13 13
82 Botswana 11925 T 13 13
83 Botswana 11926 G 13 13
84 Botswana 11927 T 13 13
85 Botswana 11928 G 13 13
86 Botswana 11929 G 13 13
87 Botswana 11930 G 13 13
88 Botswana 11931 C 13 13
89 Botswana 11932 T 13 13
90 Botswana 11933 C 13 13
91 Botswana 11934 A 13 13
92 Botswana 11935 A 13 13
93 Botswana 11936 T 13 13
94 Botswana 11937 G 13 13
95 Botswana 11938 T 13 13
96 Botswana 11939 G 13 13
97 Botswana 11940 T 13 13
98 Botswana 11941 C 13 13
99 Botswana 11942 C 13 13
100 Botswana 11943 A 13 13
101 Botswana 11944 G 13 13
102 Botswana 11945 T 13 13
103 Botswana 11946 T 13 13
104 Botswana 11947 A 13 13
105 Botswana 11948 C 13 13
106 Botswana 11949 A 13 13
107 Botswana 11950 C 13 13
108 Botswana 11951 A 13 13
109 Botswana 11952 A 13 13
110 Botswana 11953 T 13 13
111 Botswana 11954 G 13 13
112 Botswana 11955 A 13 13
113 Botswana 11956 C 13 13
114 Botswana 11957 A 13 13
115 Botswana 11958 T 13 13
116 Botswana 11959 T 13 13
117 Botswana 11960 C 13 13
118 Botswana 11961 T 13 13
119 Botswana 11962 C 13 13
120 Botswana 11963 T 13 13
121 Botswana 11964 T 13 13
122 Botswana 11965 A 13 13
123 Botswana 11966 G 13 13
124 Botswana 11967 C 13 13
125 Botswana 11968 T 13 13
126 Botswana 11969 A 13 13
127 Botswana 11970 A 13 13
128 Botswana 11971 A 13 13
129 Botswana 11972 G 13 13
130 Botswana 11973 A 13 13
131 Botswana 11974 T 13 13
132 Botswana 11975 A 13 13
133 Botswana 11976 C 13 13
134 Botswana 11977 T 13 13
135 Botswana 11978 A 13 13
136 Botswana 11979 C 13 13
137 Botswana 11980 T 13 13
138 Botswana 11981 G 13 13
139 Botswana 11982 A 13 13
140 Botswana 11983 A 13 13
141 Botswana 11984 G 13 13
142 Botswana 11985 C 13 13
143 Botswana 11986 C 13 13
144 Botswana 11987 T 13 13
145 Botswana 11988 T 13 13
146 Botswana 11989 T 13 13
147 Botswana 11990 G 13 13
148 Botswana 11991 A 13 13
149 Botswana 11992 A 13 13
150 Botswana 11993 A 13 13
151 Botswana 11994 A 13 13
152 Botswana 11995 A 13 13
153 Botswana 11996 A 13 13
154 Botswana 11997 T 13 13
155 Botswana 11998 G 13 13
156 Botswana 11999 G 13 13
157 Botswana 12000 T 13 13
158 Botswana 12001 T 13 13
159 Botswana 12002 T 13 13
160 Botswana 12003 C 13 13
161 Botswana 12004 A 13 13
162 Botswana 12005 C 13 13
163 Botswana 12006 T 13 13
164 Botswana 12007 A 13 13
165 Botswana 12008 C 13 13
166 Botswana 12009 T 13 13
167 Botswana 12010 T 13 13
168 Botswana 12011 T 13 13
169 Botswana 12012 C 13 13
170 Botswana 12013 T 13 13
171 Botswana 12014 G 13 13
172 Botswana 12015 T 13 13
173 Botswana 12016 T 13 13
174 Botswana 12017 T 13 13
175 Botswana 12018 T 13 13
176 Botswana 12019 G 13 13
177 Botswana 12020 C 13 13
178 Botswana 12021 T 13 13
179 Botswana 12022 T 13 13
180 Botswana 12023 T 13 13
181 Botswana 12024 C 13 13
182 Botswana 12025 C 13 13
183 Botswana 12026 A 13 13
184 Botswana 12027 T 13 13
185 Botswana 12028 G 13 13
186 Botswana 12029 C 13 13
187 Botswana 12030 A 13 13
188 Botswana 12031 G 13 13
189 Botswana 12032 G 13 13
190 Botswana 12033 G 13 13
191 Botswana 12034 T 13 13
192 Botswana 12035 G 13 13
193 Botswana 12036 C 13 13
194 Botswana 12037 T 13 13
195 Botswana 12038 G 13 13
196 Botswana 12039 T 13 13
197 Botswana 12040 A 13 13
198 Botswana 12041 G 13 13
199 Botswana 12042 A 13 13
200 Botswana 12043 C 13 13
201 Botswana 12044 A 13 13
202 Botswana 12045 T 13 13
203 Botswana 12046 A 13 13
204 Botswana 12047 A 13 13
205 Botswana 12048 A 13 13
206 Botswana 12049 C 13 13
207 Botswana 12050 A 13 13
208 Botswana 12051 A 13 13
209 Botswana 12052 G 13 13
210 Botswana 12053 C 13 13
211 Botswana 12054 T 13 13
212 Botswana 12055 T 13 13
213 Botswana 12056 T 13 13
214 Botswana 12057 G 13 13
215 Botswana 12058 T 13 13
216 Botswana 12059 G 13 13
217 Botswana 12060 A 13 13
218 Botswana 12061 A 13 13
219 Botswana 12062 G 13 13
220 Botswana 12063 A 13 13
221 Botswana 12064 A 13 13
222 Botswana 12065 A 13 13
223 Botswana 12066 T 13 13
224 Botswana 12067 G 13 13
225 Botswana 12068 C 13 13
226 Botswana 12069 T 13 13
227 Botswana 12070 G 13 13
228 Botswana 12071 G 13 13
229 Botswana 12072 A 13 13
230 Botswana 12073 C 13 13
231 Botswana 12074 A 13 13
232 Botswana 12075 A 13 13
233 Botswana 12076 C 13 13
234 Botswana 12077 A 13 13
235 Botswana 12078 G 13 13
236 Botswana 12079 G 13 13
237 Botswana 12080 G 13 13
238 Botswana 12081 C 13 13
239 Botswana 12082 A 13 13
240 Botswana 12083 A 13 13
241 Botswana 12084 C 13 13
242 Botswana 12085 C 13 13
243 Botswana 12086 T 13 13
244 Botswana 12087 T 13 13
245 Botswana 12088 A 13 13
246 Botswana 12089 C 13 13
247 Botswana 12090 A 13 13
248 Botswana 12091 A 13 13