National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                   1                
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bolivia 11843 T 27 27
1 Bolivia 11844 C 27 27
2 Bolivia 11845 T 27 27
3 Bolivia 11846 A 27 27
4 Bolivia 11847 A 27 27
5 Bolivia 11848 A 27 27
6 Bolivia 11849 A 27 27
7 Bolivia 11850 T 27 27
8 Bolivia 11851 G 27 27
9 Bolivia 11852 T 27 27
10 Bolivia 11853 C 27 27
11 Bolivia 11854 A 27 27
12 Bolivia 11855 G 27 27
13 Bolivia 11856 A 27 27
14 Bolivia 11857 T 27 27
15 Bolivia 11858 G 27 27
16 Bolivia 11859 T 27 27
17 Bolivia 11860 A 27 27
18 Bolivia 11861 A 27 27
19 Bolivia 11862 A 27 27
20 Bolivia 11863 G 27 27
21 Bolivia 11864 T 27 27
22 Bolivia 11865 G 27 27
23 Bolivia 11866 C 27 27
24 Bolivia 11867 A 27 27
25 Bolivia 11868 C 27 27
26 Bolivia 11869 A 27 27
27 Bolivia 11870 T 27 27
28 Bolivia 11871 C 27 27
29 Bolivia 11872 A 27 27
30 Bolivia 11873 G 27 27
31 Bolivia 11874 T 27 27
32 Bolivia 11875 A 27 27
33 Bolivia 11876 G 27 27
34 Bolivia 11877 T 27 27
35 Bolivia 11878 C 27 27
36 Bolivia 11879 T 27 27
37 Bolivia 11880 T 27 27
38 Bolivia 11881 A 27 27
39 Bolivia 11882 C 27 27
40 Bolivia 11883 T 27 27
41 Bolivia 11884 C 27 27
42 Bolivia 11885 T 27 27
43 Bolivia 11886 C 27 27
44 Bolivia 11887 A 27 27
45 Bolivia 11888 G 27 27
46 Bolivia 11889 T 27 27
47 Bolivia 11890 T 27 27
48 Bolivia 11891 T 27 27
49 Bolivia 11892 T 27 27
50 Bolivia 11893 G 27 27
51 Bolivia 11894 C 27 27
52 Bolivia 11895 A 27 27
53 Bolivia 11896 A 27 27
54 Bolivia 11897 C 27 27
55 Bolivia 11898 A 27 27
56 Bolivia 11899 A 27 27
57 Bolivia 11900 C 27 27
58 Bolivia 11901 T 27 27
59 Bolivia 11902 C 27 27
60 Bolivia 11903 A 27 27
61 Bolivia 11904 G 27 27
62 Bolivia 11905 A 27 27
63 Bolivia 11906 G 27 27
64 Bolivia 11907 T 27 27
65 Bolivia 11908 A 27 27
66 Bolivia 11909 G 27 27
67 Bolivia 11910 A 27 27
68 Bolivia 11911 A 27 27
69 Bolivia 11912 T 27 27
70 Bolivia 11913 C 27 27
71 Bolivia 11914 A 27 27
72 Bolivia 11915 T 27 27
73 Bolivia 11916 C T 27 26 Ser3884Leu
74 Bolivia 11917 A 27 27
75 Bolivia 11918 T 27 27
76 Bolivia 11919 C 27 27
77 Bolivia 11920 T 27 27
78 Bolivia 11921 A 27 27
79 Bolivia 11922 A 27 27
80 Bolivia 11923 A 27 27
81 Bolivia 11924 T 27 27
82 Bolivia 11925 T 27 27
83 Bolivia 11926 G 27 27
84 Bolivia 11927 T 27 27
85 Bolivia 11928 G 27 27
86 Bolivia 11929 G 27 27
87 Bolivia 11930 G 27 27
88 Bolivia 11931 C 27 27
89 Bolivia 11932 T 27 27
90 Bolivia 11933 C 27 27
91 Bolivia 11934 A 27 27
92 Bolivia 11935 A 27 27
93 Bolivia 11936 T 27 27
94 Bolivia 11937 G 27 27
95 Bolivia 11938 T 27 27
96 Bolivia 11939 G 27 27
97 Bolivia 11940 T 27 27
98 Bolivia 11941 C 27 27
99 Bolivia 11942 C 27 27
100 Bolivia 11943 A 27 27
101 Bolivia 11944 G 27 27
102 Bolivia 11945 T 27 27
103 Bolivia 11946 T 27 27
104 Bolivia 11947 A 27 27
105 Bolivia 11948 C 27 27
106 Bolivia 11949 A 27 27
107 Bolivia 11950 C 27 27
108 Bolivia 11951 A 27 27
109 Bolivia 11952 A 27 27
110 Bolivia 11953 T 27 27
111 Bolivia 11954 G 27 27
112 Bolivia 11955 A 27 27
113 Bolivia 11956 C 27 27
114 Bolivia 11957 A 27 27
115 Bolivia 11958 T 27 27
116 Bolivia 11959 T 27 27
117 Bolivia 11960 C 27 27
118 Bolivia 11961 T 27 27
119 Bolivia 11962 C 27 27
120 Bolivia 11963 T 27 27
121 Bolivia 11964 T 27 27
122 Bolivia 11965 A 27 27
123 Bolivia 11966 G 27 27
124 Bolivia 11967 C 27 27
125 Bolivia 11968 T 27 27
126 Bolivia 11969 A 27 27
127 Bolivia 11970 A 27 27
128 Bolivia 11971 A 27 27
129 Bolivia 11972 G 27 27
130 Bolivia 11973 A 27 27
131 Bolivia 11974 T 27 27
132 Bolivia 11975 A 27 27
133 Bolivia 11976 C 27 27
134 Bolivia 11977 T 27 27
135 Bolivia 11978 A 27 27
136 Bolivia 11979 C 27 27
137 Bolivia 11980 T 27 27
138 Bolivia 11981 G 27 27
139 Bolivia 11982 A 27 27
140 Bolivia 11983 A 27 27
141 Bolivia 11984 G 27 27
142 Bolivia 11985 C 27 27
143 Bolivia 11986 C 27 27
144 Bolivia 11987 T 27 27
145 Bolivia 11988 T 27 27
146 Bolivia 11989 T 27 27
147 Bolivia 11990 G 27 27
148 Bolivia 11991 A 27 27
149 Bolivia 11992 A 27 27
150 Bolivia 11993 A 27 27
151 Bolivia 11994 A 27 27
152 Bolivia 11995 A 27 27
153 Bolivia 11996 A 27 27
154 Bolivia 11997 T 27 27
155 Bolivia 11998 G 27 27
156 Bolivia 11999 G 27 27
157 Bolivia 12000 T 27 27
158 Bolivia 12001 T 27 27
159 Bolivia 12002 T 27 27
160 Bolivia 12003 C 27 27
161 Bolivia 12004 A 27 27
162 Bolivia 12005 C 27 27
163 Bolivia 12006 T 27 27
164 Bolivia 12007 A 27 27
165 Bolivia 12008 C 27 27
166 Bolivia 12009 T 27 27
167 Bolivia 12010 T 27 27
168 Bolivia 12011 T 27 27
169 Bolivia 12012 C 27 27
170 Bolivia 12013 T 27 27
171 Bolivia 12014 G 27 27
172 Bolivia 12015 T 27 27
173 Bolivia 12016 T 27 27
174 Bolivia 12017 T 27 27
175 Bolivia 12018 T 27 27
176 Bolivia 12019 G 27 27
177 Bolivia 12020 C 27 27
178 Bolivia 12021 T 27 27
179 Bolivia 12022 T 27 27
180 Bolivia 12023 T 27 27
181 Bolivia 12024 C 27 27
182 Bolivia 12025 C 27 27
183 Bolivia 12026 A 27 27
184 Bolivia 12027 T 27 27
185 Bolivia 12028 G 27 27
186 Bolivia 12029 C 27 27
187 Bolivia 12030 A 27 27
188 Bolivia 12031 G 27 27
189 Bolivia 12032 G 27 27
190 Bolivia 12033 G 27 27
191 Bolivia 12034 T 27 27
192 Bolivia 12035 G 27 27
193 Bolivia 12036 C 27 27
194 Bolivia 12037 T 27 27
195 Bolivia 12038 G 27 27
196 Bolivia 12039 T 27 27
197 Bolivia 12040 A 27 27
198 Bolivia 12041 G 27 27
199 Bolivia 12042 A 27 27
200 Bolivia 12043 C 27 27
201 Bolivia 12044 A 27 27
202 Bolivia 12045 T 27 27
203 Bolivia 12046 A 27 27
204 Bolivia 12047 A 27 27
205 Bolivia 12048 A 27 27
206 Bolivia 12049 C 27 27
207 Bolivia 12050 A 27 27
208 Bolivia 12051 A 27 27
209 Bolivia 12052 G 27 27
210 Bolivia 12053 C 27 27
211 Bolivia 12054 T 27 27
212 Bolivia 12055 T 27 27
213 Bolivia 12056 T 27 27
214 Bolivia 12057 G 27 27
215 Bolivia 12058 T 27 27
216 Bolivia 12059 G 27 27
217 Bolivia 12060 A 27 27
218 Bolivia 12061 A 27 27
219 Bolivia 12062 G 27 27
220 Bolivia 12063 A 27 27
221 Bolivia 12064 A 27 27
222 Bolivia 12065 A 27 27
223 Bolivia 12066 T 27 27
224 Bolivia 12067 G 27 27
225 Bolivia 12068 C 27 27
226 Bolivia 12069 T 27 27
227 Bolivia 12070 G 27 27
228 Bolivia 12071 G 27 27
229 Bolivia 12072 A 27 27
230 Bolivia 12073 C 27 27
231 Bolivia 12074 A 27 27
232 Bolivia 12075 A 27 27
233 Bolivia 12076 C 27 27
234 Bolivia 12077 A 27 27
235 Bolivia 12078 G 27 27
236 Bolivia 12079 G 27 27
237 Bolivia 12080 G 27 27
238 Bolivia 12081 C 27 27
239 Bolivia 12082 A 27 27
240 Bolivia 12083 A 27 27
241 Bolivia 12084 C 27 27
242 Bolivia 12085 C 27 27
243 Bolivia 12086 T 27 27
244 Bolivia 12087 T 27 27
245 Bolivia 12088 A 27 27
246 Bolivia 12089 C 27 27
247 Bolivia 12090 A 27 27
248 Bolivia 12091 A 27 27