National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                 2  
C   9   1                                
D   15     2                              
E   15       1   1                        
F   3         1                          
G   3                                    
H   3             1                      
I   6                                 1  
K   18                       1            
L   45         3     1   5                
M   12               4   1           1    
N   9                       1     1      
Q   18                                    
R   6                                    
S   30         1                   1      
T   12               1               1    
V   27                                 3  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Belgium 11843 T 3693 3693
1 Belgium 11844 C 3693 3693
2 Belgium 11845 T A 3693 3692 Ser3860Ser
3 Belgium 11846 A 3693 3693
4 Belgium 11847 A 3693 3693
5 Belgium 11848 A 3693 3693
6 Belgium 11849 A 3693 3693
7 Belgium 11850 T 3693 3693
8 Belgium 11851 G T 3693 3667 Met3862Ile
9 Belgium 11852 T 3693 3693
10 Belgium 11853 C 3693 3693
11 Belgium 11854 A 3693 3693
12 Belgium 11855 G 3693 3693
13 Belgium 11856 A 3693 3693
14 Belgium 11857 T 3693 3693
15 Belgium 11858 G 3693 3693
16 Belgium 11859 T 3693 3693
17 Belgium 11860 A 3693 3693
18 Belgium 11861 A 3693 3693
19 Belgium 11862 A 3693 3693
20 Belgium 11863 G 3693 3693
21 Belgium 11864 T 3693 3693
22 Belgium 11865 G 3693 3693
23 Belgium 11866 C T 3693 3692 Cys3867Cys
24 Belgium 11867 A 3693 3693
25 Belgium 11868 C 3693 3693
26 Belgium 11869 A 3693 3692
27 Belgium 11870 T 3693 3693
28 Belgium 11871 C 3693 3693
29 Belgium 11872 A 3693 3693
30 Belgium 11873 G 3693 3693
31 Belgium 11874 T 3693 3693
32 Belgium 11875 A G 3693 3692 Val3870Val
33 Belgium 11876 G 3693 3693
34 Belgium 11877 T 3693 3693
35 Belgium 11878 C 3693 3693
36 Belgium 11879 T 3693 3693
37 Belgium 11880 T 3693 3693
38 Belgium 11881 A 3693 3693
39 Belgium 11882 C 3693 3693
40 Belgium 11883 T 3693 3693
41 Belgium 11884 C T 3693 3692 Leu3873Leu
42 Belgium 11885 T 3693 3693
43 Belgium 11886 C 3693 3693
44 Belgium 11887 A 3693 3693
45 Belgium 11888 G 3693 3693
46 Belgium 11889 T 3693 3693
47 Belgium 11890 T 3696 3696
48 Belgium 11891 T 3696 3696
49 Belgium 11892 T 3696 3696
50 Belgium 11893 G T 3696 3692 Leu3876Phe
51 Belgium 11894 C 3696 3696
52 Belgium 11895 A 3696 3696
53 Belgium 11896 A 3696 3696
54 Belgium 11897 C 3696 3696
55 Belgium 11898 A 3696 3696
56 Belgium 11899 A 3696 3696
57 Belgium 11900 C 3696 3696
58 Belgium 11901 T 3696 3696
59 Belgium 11902 C 3696 3696
60 Belgium 11903 A 3696 3696
61 Belgium 11904 G 3696 3696
62 Belgium 11905 A 3696 3696
63 Belgium 11906 G 3696 3696
64 Belgium 11907 T 3696 3696
65 Belgium 11908 A 3696 3696
66 Belgium 11909 G 3696 3696
67 Belgium 11910 A 3696 3696
68 Belgium 11911 A 3696 3696
69 Belgium 11912 T 3696 3696
70 Belgium 11913 C 3696 3696
71 Belgium 11914 A 3696 3696
72 Belgium 11915 T 3696 3696
73 Belgium 11916 C 3696 3696
74 Belgium 11917 A 3696 3696
75 Belgium 11918 T 3696 3696
76 Belgium 11919 C T 3696 3695 Ser3885Phe
77 Belgium 11920 T 3696 3696
78 Belgium 11921 A 3696 3696
79 Belgium 11922 A 3696 3696
80 Belgium 11923 A 3696 3696
81 Belgium 11924 T 3696 3696
82 Belgium 11925 T 3696 3696
83 Belgium 11926 G 3696 3696
84 Belgium 11927 T 3696 3696
85 Belgium 11928 G 3696 3696
86 Belgium 11929 G 3696 3696
87 Belgium 11930 G 3696 3696
88 Belgium 11931 C 3696 3696
89 Belgium 11932 T 3696 3696
90 Belgium 11933 C 3696 3696
91 Belgium 11934 A 3696 3696
92 Belgium 11935 A 3696 3696
93 Belgium 11936 T 3696 3696
94 Belgium 11937 G 3696 3696
95 Belgium 11938 T 3696 3696
96 Belgium 11939 G 3696 3696
97 Belgium 11940 T 3696 3696
98 Belgium 11941 C 3696 3696
99 Belgium 11942 C 3696 3696
100 Belgium 11943 A 3696 3696
101 Belgium 11944 G 3696 3696
102 Belgium 11945 T 3696 3696
103 Belgium 11946 T 3696 3696
104 Belgium 11947 A 3696 3695
105 Belgium 11948 C 3696 3696
106 Belgium 11949 A 3696 3696
107 Belgium 11950 C T 3696 3692 His3895His
108 Belgium 11951 A 3696 3696
109 Belgium 11952 A 3696 3696
110 Belgium 11953 T 3696 3696
111 Belgium 11954 G 3696 3696
112 Belgium 11955 A 3696 3696
113 Belgium 11956 C T 3696 3694 Asp3897Asp
114 Belgium 11957 A 3696 3696
115 Belgium 11958 T 3696 3696
116 Belgium 11959 T 3696 3696
117 Belgium 11960 C A 3696 3695 Leu3899Ile
118 Belgium 11961 T 3696 3696
119 Belgium 11962 C T,A 3696 3688 Leu3899Leu-p.Leu3899Leu
120 Belgium 11963 T 3696 3696
121 Belgium 11964 T 3696 3696
122 Belgium 11965 A 3696 3696
123 Belgium 11966 G 3696 3696
124 Belgium 11967 C T 3696 3695 Ala3901Val
125 Belgium 11968 T 3696 3696
126 Belgium 11969 A 3696 3696
127 Belgium 11970 A 3696 3696
128 Belgium 11971 A C 3696 3693 Lys3902Asn
129 Belgium 11972 G 3696 3696
130 Belgium 11973 A 3696 3696
131 Belgium 11974 T 3696 3696
132 Belgium 11975 A 3696 3696
133 Belgium 11976 C 3696 3696
134 Belgium 11977 T 3696 3696
135 Belgium 11978 A 3696 3696
136 Belgium 11979 C 3696 3696
137 Belgium 11980 T 3696 3696
138 Belgium 11981 G 3696 3696
139 Belgium 11982 A 3696 3696
140 Belgium 11983 A 3696 3696
141 Belgium 11984 G 3696 3696
142 Belgium 11985 C 3696 3696
143 Belgium 11986 C 3696 3696
144 Belgium 11987 T 3696 3696
145 Belgium 11988 T 3696 3696
146 Belgium 11989 T C 3696 3695 Phe3908Phe
147 Belgium 11990 G 3696 3696
148 Belgium 11991 A G 3696 3694 Glu3909Gly
149 Belgium 11992 A 3696 3696
150 Belgium 11993 A 3696 3696
151 Belgium 11994 A 3696 3696
152 Belgium 11995 A 3696 3696
153 Belgium 11996 A 3696 3696
154 Belgium 11997 T 3696 3696
155 Belgium 11998 G T 3696 3695 Met3911Ile
156 Belgium 11999 G 3696 3696
157 Belgium 12000 T 3696 3696
158 Belgium 12001 T A 3696 3695 Val3912Val
159 Belgium 12002 T 3696 3696
160 Belgium 12003 C 3696 3696
161 Belgium 12004 A 3696 3696
162 Belgium 12005 C 3696 3696
163 Belgium 12006 T 3696 3696
164 Belgium 12007 A 3696 3696
165 Belgium 12008 C T 3696 3695 Leu3915Phe
166 Belgium 12009 T 3696 3696
167 Belgium 12010 T 3696 3695
168 Belgium 12011 T 3696 3696
169 Belgium 12012 C 3696 3696
170 Belgium 12013 T 3696 3696
171 Belgium 12014 G 3696 3696
172 Belgium 12015 T 3696 3696
173 Belgium 12016 T A 3696 3695 Val3917Val
174 Belgium 12017 T 3696 3696
175 Belgium 12018 T 3696 3696
176 Belgium 12019 G 3696 3696
177 Belgium 12020 C 3696 3696
178 Belgium 12021 T 3696 3696
179 Belgium 12022 T 3696 3696
180 Belgium 12023 T 3696 3696
181 Belgium 12024 C 3696 3696
182 Belgium 12025 C 3696 3696
183 Belgium 12026 A 3696 3696
184 Belgium 12027 T 3696 3696
185 Belgium 12028 G T 3696 3688 Met3921Ile
186 Belgium 12029 C 3696 3696
187 Belgium 12030 A 3696 3696
188 Belgium 12031 G 3696 3696
189 Belgium 12032 G 3696 3696
190 Belgium 12033 G 3696 3696
191 Belgium 12034 T 3696 3696
192 Belgium 12035 G 3696 3696
193 Belgium 12036 C T 3696 3695 Ala3924Val
194 Belgium 12037 T 3696 3696
195 Belgium 12038 G 3696 3696
196 Belgium 12039 T 3696 3696
197 Belgium 12040 A 3696 3696
198 Belgium 12041 G 3696 3696
199 Belgium 12042 A 3696 3696
200 Belgium 12043 C 3696 3696
201 Belgium 12044 A G 3698 3696 Ile3927Val
202 Belgium 12045 T 3698 3698
203 Belgium 12046 A 3698 3698
204 Belgium 12047 A 3698 3698
205 Belgium 12048 A 3698 3698
206 Belgium 12049 C 3698 3698
207 Belgium 12050 A 3699 3699
208 Belgium 12051 A 3699 3699
209 Belgium 12052 G 3699 3699
210 Belgium 12053 C T 3699 3698 Leu3930Phe
211 Belgium 12054 T 3699 3699
212 Belgium 12055 T 3699 3699
213 Belgium 12056 T 3699 3699
214 Belgium 12057 G 3699 3699
215 Belgium 12058 T 3699 3699
216 Belgium 12059 G 3699 3699
217 Belgium 12060 A 3699 3699
218 Belgium 12061 A G 3699 3698 Glu3932Glu
219 Belgium 12062 G 3699 3699
220 Belgium 12063 A 3699 3699
221 Belgium 12064 A 3699 3699
222 Belgium 12065 A T 3699 3698 Met3934Leu
223 Belgium 12066 T C 3699 3662 Met3934Thr
224 Belgium 12067 G T 3699 3692 Met3934Ile
225 Belgium 12068 C T 3699 3697 Leu3935Leu
226 Belgium 12069 T 3699 3699
227 Belgium 12070 G T 3699 3697 Leu3935Leu
228 Belgium 12071 G 3699 3699
229 Belgium 12072 A 3699 3699
230 Belgium 12073 C T 3699 3697 Asp3936Asp
231 Belgium 12074 A 3699 3699
232 Belgium 12075 A G 3699 3673 Asn3937Ser
233 Belgium 12076 C T 3699 3696 Asn3937Asn
234 Belgium 12077 A 3699 3699
235 Belgium 12078 G 3699 3699
236 Belgium 12079 G 3699 3699
237 Belgium 12080 G 3699 3699
238 Belgium 12081 C 3699 3699
239 Belgium 12082 A 3699 3699
240 Belgium 12083 A 3699 3699
241 Belgium 12084 C T 3699 3697 Thr3940Ile
242 Belgium 12085 C T 3699 3697 Thr3940Thr
243 Belgium 12086 T 3699 3699
244 Belgium 12087 T 3699 3699
245 Belgium 12088 A 3699 3699
246 Belgium 12089 C 3699 3699
247 Belgium 12090 A 3699 3699
248 Belgium 12091 A 3699 3699