National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15     2                              
E   15       1                            
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                   3                
M   12               2                    
N   9                       1            
Q   18                                    
R   6                                    
S   30                             1      
T   12 1             1               1    
V   27                                 1  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Bangladesh 11843 T 659 659
1 Bangladesh 11844 C 659 659
2 Bangladesh 11845 T 659 659
3 Bangladesh 11846 A 659 659
4 Bangladesh 11847 A 659 659
5 Bangladesh 11848 A 659 659
6 Bangladesh 11849 A 659 659
7 Bangladesh 11850 T 659 659
8 Bangladesh 11851 G T 659 658 Met3862Ile
9 Bangladesh 11852 T 659 659
10 Bangladesh 11853 C 659 659
11 Bangladesh 11854 A 659 659
12 Bangladesh 11855 G 659 659
13 Bangladesh 11856 A 659 659
14 Bangladesh 11857 T 659 659
15 Bangladesh 11858 G 659 659
16 Bangladesh 11859 T 659 659
17 Bangladesh 11860 A 659 659
18 Bangladesh 11861 A 659 658
19 Bangladesh 11862 A 659 659
20 Bangladesh 11863 G 659 659
21 Bangladesh 11864 T 659 659
22 Bangladesh 11865 G 659 659
23 Bangladesh 11866 C 659 659
24 Bangladesh 11867 A 659 659
25 Bangladesh 11868 C 659 659
26 Bangladesh 11869 A 659 659
27 Bangladesh 11870 T 659 659
28 Bangladesh 11871 C 659 659
29 Bangladesh 11872 A 659 659
30 Bangladesh 11873 G 659 659
31 Bangladesh 11874 T 659 659
32 Bangladesh 11875 A 659 659
33 Bangladesh 11876 G 659 659
34 Bangladesh 11877 T 659 659
35 Bangladesh 11878 C 659 659
36 Bangladesh 11879 T 659 659
37 Bangladesh 11880 T 659 659
38 Bangladesh 11881 A 659 659
39 Bangladesh 11882 C 659 659
40 Bangladesh 11883 T 659 659
41 Bangladesh 11884 C 659 659
42 Bangladesh 11885 T 659 659
43 Bangladesh 11886 C 659 659
44 Bangladesh 11887 A 659 659
45 Bangladesh 11888 G 659 659
46 Bangladesh 11889 T 659 659
47 Bangladesh 11890 T 675 675
48 Bangladesh 11891 T 675 675
49 Bangladesh 11892 T 675 675
50 Bangladesh 11893 G 675 675
51 Bangladesh 11894 C 675 675
52 Bangladesh 11895 A 675 675
53 Bangladesh 11896 A 675 675
54 Bangladesh 11897 C 675 675
55 Bangladesh 11898 A 675 675
56 Bangladesh 11899 A 675 675
57 Bangladesh 11900 C 675 675
58 Bangladesh 11901 T 675 675
59 Bangladesh 11902 C 675 675
60 Bangladesh 11903 A 675 675
61 Bangladesh 11904 G 676 676
62 Bangladesh 11905 A 676 675
63 Bangladesh 11906 G 676 676
64 Bangladesh 11907 T 676 676
65 Bangladesh 11908 A 675 675
66 Bangladesh 11909 G 675 675
67 Bangladesh 11910 A 675 675
68 Bangladesh 11911 A 675 675
69 Bangladesh 11912 T 675 675
70 Bangladesh 11913 C 675 674
71 Bangladesh 11914 A 675 674
72 Bangladesh 11915 T 675 674
73 Bangladesh 11916 C 675 674
74 Bangladesh 11917 A 675 674
75 Bangladesh 11918 T 675 674
76 Bangladesh 11919 C 675 674
77 Bangladesh 11920 T 675 674
78 Bangladesh 11921 A 675 674
79 Bangladesh 11922 A 675 674
80 Bangladesh 11923 A 675 675
81 Bangladesh 11924 T 675 675
82 Bangladesh 11925 T 675 675
83 Bangladesh 11926 G 675 674
84 Bangladesh 11927 T 675 674
85 Bangladesh 11928 G 673 672
86 Bangladesh 11929 G 673 672
87 Bangladesh 11930 G 673 672
88 Bangladesh 11931 C 673 672
89 Bangladesh 11932 T 673 671
90 Bangladesh 11933 C 673 671
91 Bangladesh 11934 A 673 671
92 Bangladesh 11935 A 673 671
93 Bangladesh 11936 T 673 671
94 Bangladesh 11937 G 673 672
95 Bangladesh 11938 T 673 672
96 Bangladesh 11939 G 673 672
97 Bangladesh 11940 T 673 671
98 Bangladesh 11941 C T 673 670 Val3892Val
99 Bangladesh 11942 C 673 672
100 Bangladesh 11943 A 673 672
101 Bangladesh 11944 G 673 673
102 Bangladesh 11945 T 673 673
103 Bangladesh 11946 T 673 673
104 Bangladesh 11947 A 673 673
105 Bangladesh 11948 C 673 673
106 Bangladesh 11949 A 673 673
107 Bangladesh 11950 C 673 673
108 Bangladesh 11951 A 673 673
109 Bangladesh 11952 A 673 673
110 Bangladesh 11953 T 673 673
111 Bangladesh 11954 G 673 673
112 Bangladesh 11955 A 673 673
113 Bangladesh 11956 C T 673 671 Asp3897Asp
114 Bangladesh 11957 A 673 672
115 Bangladesh 11958 T 673 672
116 Bangladesh 11959 T 673 672
117 Bangladesh 11960 C 673 672
118 Bangladesh 11961 T 673 672
119 Bangladesh 11962 C 673 672
120 Bangladesh 11963 T 673 672
121 Bangladesh 11964 T 673 672
122 Bangladesh 11965 A 673 672
123 Bangladesh 11966 G 673 672
124 Bangladesh 11967 C 673 672
125 Bangladesh 11968 T 673 671
126 Bangladesh 11969 A 673 672
127 Bangladesh 11970 A 673 672
128 Bangladesh 11971 A 673 672
129 Bangladesh 11972 G 673 672
130 Bangladesh 11973 A 673 671
131 Bangladesh 11974 T 673 671
132 Bangladesh 11975 A 673 671
133 Bangladesh 11976 C 673 671
134 Bangladesh 11977 T 673 671
135 Bangladesh 11978 A 673 671
136 Bangladesh 11979 C 674 673
137 Bangladesh 11980 T 674 673
138 Bangladesh 11981 G 674 673
139 Bangladesh 11982 A 674 673
140 Bangladesh 11983 A 674 673
141 Bangladesh 11984 G 674 673
142 Bangladesh 11985 C 674 673
143 Bangladesh 11986 C 674 673
144 Bangladesh 11987 T 674 673
145 Bangladesh 11988 T 674 673
146 Bangladesh 11989 T 674 673
147 Bangladesh 11990 G 674 673
148 Bangladesh 11991 A 674 673
149 Bangladesh 11992 A 674 673
150 Bangladesh 11993 A 674 672
151 Bangladesh 11994 A 674 673
152 Bangladesh 11995 A 674 673
153 Bangladesh 11996 A 674 673
154 Bangladesh 11997 T 674 673
155 Bangladesh 11998 G 674 673
156 Bangladesh 11999 G 674 673
157 Bangladesh 12000 T 674 672
158 Bangladesh 12001 T 674 673
159 Bangladesh 12002 T 674 673
160 Bangladesh 12003 C 674 673
161 Bangladesh 12004 A 674 673
162 Bangladesh 12005 C 674 673
163 Bangladesh 12006 T 674 673
164 Bangladesh 12007 A 674 673
165 Bangladesh 12008 C 674 673
166 Bangladesh 12009 T 674 674
167 Bangladesh 12010 T 674 674
168 Bangladesh 12011 T 674 674
169 Bangladesh 12012 C 674 674
170 Bangladesh 12013 T 674 674
171 Bangladesh 12014 G 674 674
172 Bangladesh 12015 T 674 674
173 Bangladesh 12016 T 674 674
174 Bangladesh 12017 T 674 674
175 Bangladesh 12018 T 674 674
176 Bangladesh 12019 G 674 674
177 Bangladesh 12020 C 674 674
178 Bangladesh 12021 T 674 674
179 Bangladesh 12022 T 674 674
180 Bangladesh 12023 T 674 674
181 Bangladesh 12024 C 674 674
182 Bangladesh 12025 C T 674 672 Ser3920Ser
183 Bangladesh 12026 A 674 674
184 Bangladesh 12027 T 674 674
185 Bangladesh 12028 G 674 674
186 Bangladesh 12029 C 674 674
187 Bangladesh 12030 A 674 674
188 Bangladesh 12031 G 674 674
189 Bangladesh 12032 G 674 674
190 Bangladesh 12033 G 674 674
191 Bangladesh 12034 T 674 674
192 Bangladesh 12035 G 674 674
193 Bangladesh 12036 C 674 674
194 Bangladesh 12037 T 674 674
195 Bangladesh 12038 G 674 674
196 Bangladesh 12039 T 674 674
197 Bangladesh 12040 A 674 674
198 Bangladesh 12041 G 674 674
199 Bangladesh 12042 A 674 674
200 Bangladesh 12043 C T 674 673 Asp3926Asp
201 Bangladesh 12044 A 674 674
202 Bangladesh 12045 T 674 674
203 Bangladesh 12046 A 674 674
204 Bangladesh 12047 A 674 674
205 Bangladesh 12048 A 674 674
206 Bangladesh 12049 C 674 674
207 Bangladesh 12050 A 674 673
208 Bangladesh 12051 A 674 673
209 Bangladesh 12052 G 674 673
210 Bangladesh 12053 C 674 673
211 Bangladesh 12054 T 674 673
212 Bangladesh 12055 T 674 672
213 Bangladesh 12056 T 674 673
214 Bangladesh 12057 G 674 673
215 Bangladesh 12058 T 674 673
216 Bangladesh 12059 G 674 673
217 Bangladesh 12060 A 674 673
218 Bangladesh 12061 A G 674 671 Glu3932Glu
219 Bangladesh 12062 G 674 673
220 Bangladesh 12063 A 674 673
221 Bangladesh 12064 A 674 673
222 Bangladesh 12065 A 674 673
223 Bangladesh 12066 T 674 673
224 Bangladesh 12067 G T 674 672 Met3934Ile
225 Bangladesh 12068 C T 674 673 Leu3935Leu
226 Bangladesh 12069 T 674 674
227 Bangladesh 12070 G T 674 672 Leu3935Leu
228 Bangladesh 12071 G 674 674
229 Bangladesh 12072 A 674 674
230 Bangladesh 12073 C 674 674
231 Bangladesh 12074 A 674 674
232 Bangladesh 12075 A 674 674
233 Bangladesh 12076 C T 674 673 Asn3937Asn
234 Bangladesh 12077 A 674 674
235 Bangladesh 12078 G 674 674
236 Bangladesh 12079 G 674 674
237 Bangladesh 12080 G 674 674
238 Bangladesh 12081 C 674 674
239 Bangladesh 12082 A 674 674
240 Bangladesh 12083 A G 674 673 Thr3940Ala
241 Bangladesh 12084 C T 674 673 Thr3940Ile
242 Bangladesh 12085 C T 674 673 Thr3940Thr
243 Bangladesh 12086 T C 674 672 Leu3941Leu
244 Bangladesh 12087 T 674 674
245 Bangladesh 12088 A 674 674
246 Bangladesh 12089 C 674 674
247 Bangladesh 12090 A 674 674
248 Bangladesh 12091 A 674 674