National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15     1                              
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                   1                
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bahrain 11843 T 150 150
1 Bahrain 11844 C 150 150
2 Bahrain 11845 T 150 150
3 Bahrain 11846 A 150 150
4 Bahrain 11847 A 150 150
5 Bahrain 11848 A 150 150
6 Bahrain 11849 A 150 150
7 Bahrain 11850 T 150 150
8 Bahrain 11851 G 150 150
9 Bahrain 11852 T 150 150
10 Bahrain 11853 C 150 150
11 Bahrain 11854 A 150 150
12 Bahrain 11855 G 150 150
13 Bahrain 11856 A 150 150
14 Bahrain 11857 T 150 150
15 Bahrain 11858 G 150 150
16 Bahrain 11859 T 150 150
17 Bahrain 11860 A 150 150
18 Bahrain 11861 A 150 150
19 Bahrain 11862 A 150 150
20 Bahrain 11863 G 150 150
21 Bahrain 11864 T 150 150
22 Bahrain 11865 G 150 150
23 Bahrain 11866 C 150 149
24 Bahrain 11867 A 150 150
25 Bahrain 11868 C 150 150
26 Bahrain 11869 A 150 150
27 Bahrain 11870 T 150 150
28 Bahrain 11871 C 150 150
29 Bahrain 11872 A 150 150
30 Bahrain 11873 G 150 150
31 Bahrain 11874 T 150 150
32 Bahrain 11875 A 150 150
33 Bahrain 11876 G 150 150
34 Bahrain 11877 T 150 150
35 Bahrain 11878 C 150 150
36 Bahrain 11879 T 150 150
37 Bahrain 11880 T 150 150
38 Bahrain 11881 A 150 150
39 Bahrain 11882 C 150 150
40 Bahrain 11883 T 150 150
41 Bahrain 11884 C 150 150
42 Bahrain 11885 T 150 150
43 Bahrain 11886 C 150 150
44 Bahrain 11887 A 150 150
45 Bahrain 11888 G 150 150
46 Bahrain 11889 T 150 150
47 Bahrain 11890 T 150 150
48 Bahrain 11891 T 150 150
49 Bahrain 11892 T 150 150
50 Bahrain 11893 G 150 150
51 Bahrain 11894 C 150 150
52 Bahrain 11895 A 150 150
53 Bahrain 11896 A 150 150
54 Bahrain 11897 C 150 150
55 Bahrain 11898 A 150 150
56 Bahrain 11899 A 150 150
57 Bahrain 11900 C 150 150
58 Bahrain 11901 T 150 150
59 Bahrain 11902 C 150 150
60 Bahrain 11903 A 150 150
61 Bahrain 11904 G 150 150
62 Bahrain 11905 A 150 150
63 Bahrain 11906 G 150 150
64 Bahrain 11907 T 150 150
65 Bahrain 11908 A 150 150
66 Bahrain 11909 G 150 150
67 Bahrain 11910 A 150 150
68 Bahrain 11911 A 150 150
69 Bahrain 11912 T 150 150
70 Bahrain 11913 C 150 150
71 Bahrain 11914 A 150 150
72 Bahrain 11915 T 150 150
73 Bahrain 11916 C 150 150
74 Bahrain 11917 A 150 150
75 Bahrain 11918 T 150 150
76 Bahrain 11919 C 150 150
77 Bahrain 11920 T 150 150
78 Bahrain 11921 A 150 150
79 Bahrain 11922 A 150 150
80 Bahrain 11923 A 150 150
81 Bahrain 11924 T 150 150
82 Bahrain 11925 T 150 150
83 Bahrain 11926 G 150 150
84 Bahrain 11927 T 150 150
85 Bahrain 11928 G 150 150
86 Bahrain 11929 G 150 150
87 Bahrain 11930 G 150 150
88 Bahrain 11931 C 150 150
89 Bahrain 11932 T 150 150
90 Bahrain 11933 C 150 150
91 Bahrain 11934 A 150 150
92 Bahrain 11935 A 150 150
93 Bahrain 11936 T 150 150
94 Bahrain 11937 G 150 150
95 Bahrain 11938 T 150 150
96 Bahrain 11939 G 150 150
97 Bahrain 11940 T 150 150
98 Bahrain 11941 C 150 150
99 Bahrain 11942 C 150 150
100 Bahrain 11943 A 150 150
101 Bahrain 11944 G 150 150
102 Bahrain 11945 T 150 150
103 Bahrain 11946 T 150 150
104 Bahrain 11947 A 150 150
105 Bahrain 11948 C 150 150
106 Bahrain 11949 A 150 150
107 Bahrain 11950 C 150 150
108 Bahrain 11951 A 150 150
109 Bahrain 11952 A 150 150
110 Bahrain 11953 T 150 150
111 Bahrain 11954 G 150 150
112 Bahrain 11955 A 150 150
113 Bahrain 11956 C 150 150
114 Bahrain 11957 A 150 150
115 Bahrain 11958 T 150 150
116 Bahrain 11959 T 150 150
117 Bahrain 11960 C 150 150
118 Bahrain 11961 T 150 150
119 Bahrain 11962 C 150 150
120 Bahrain 11963 T 150 150
121 Bahrain 11964 T 150 150
122 Bahrain 11965 A 150 150
123 Bahrain 11966 G 150 150
124 Bahrain 11967 C 150 150
125 Bahrain 11968 T 150 150
126 Bahrain 11969 A 150 150
127 Bahrain 11970 A 150 150
128 Bahrain 11971 A 150 150
129 Bahrain 11972 G 150 150
130 Bahrain 11973 A 150 150
131 Bahrain 11974 T C 150 149 Asp3903Asp
132 Bahrain 11975 A 150 150
133 Bahrain 11976 C 150 150
134 Bahrain 11977 T 150 150
135 Bahrain 11978 A 150 150
136 Bahrain 11979 C 150 150
137 Bahrain 11980 T 150 150
138 Bahrain 11981 G 150 150
139 Bahrain 11982 A 150 150
140 Bahrain 11983 A 150 150
141 Bahrain 11984 G 150 150
142 Bahrain 11985 C 150 150
143 Bahrain 11986 C 150 150
144 Bahrain 11987 T 150 150
145 Bahrain 11988 T 150 150
146 Bahrain 11989 T 150 150
147 Bahrain 11990 G 150 150
148 Bahrain 11991 A 150 150
149 Bahrain 11992 A 150 150
150 Bahrain 11993 A 150 150
151 Bahrain 11994 A 150 150
152 Bahrain 11995 A 150 150
153 Bahrain 11996 A 150 150
154 Bahrain 11997 T 150 150
155 Bahrain 11998 G 150 150
156 Bahrain 11999 G 150 150
157 Bahrain 12000 T 150 150
158 Bahrain 12001 T 150 150
159 Bahrain 12002 T 150 150
160 Bahrain 12003 C 150 150
161 Bahrain 12004 A 150 150
162 Bahrain 12005 C T 150 149 Leu3914Leu
163 Bahrain 12006 T 150 150
164 Bahrain 12007 A 150 150
165 Bahrain 12008 C 150 150
166 Bahrain 12009 T 150 150
167 Bahrain 12010 T 150 150
168 Bahrain 12011 T 150 150
169 Bahrain 12012 C 150 150
170 Bahrain 12013 T 150 150
171 Bahrain 12014 G 150 150
172 Bahrain 12015 T 150 150
173 Bahrain 12016 T 150 150
174 Bahrain 12017 T 150 150
175 Bahrain 12018 T 150 150
176 Bahrain 12019 G 150 150
177 Bahrain 12020 C 150 150
178 Bahrain 12021 T 150 150
179 Bahrain 12022 T 150 150
180 Bahrain 12023 T 150 150
181 Bahrain 12024 C 150 150
182 Bahrain 12025 C 150 150
183 Bahrain 12026 A 150 150
184 Bahrain 12027 T 150 150
185 Bahrain 12028 G 150 150
186 Bahrain 12029 C 150 150
187 Bahrain 12030 A 150 150
188 Bahrain 12031 G 150 150
189 Bahrain 12032 G 150 150
190 Bahrain 12033 G 150 150
191 Bahrain 12034 T 150 150
192 Bahrain 12035 G 150 150
193 Bahrain 12036 C 150 150
194 Bahrain 12037 T 150 150
195 Bahrain 12038 G 150 150
196 Bahrain 12039 T 150 150
197 Bahrain 12040 A 150 150
198 Bahrain 12041 G 150 150
199 Bahrain 12042 A 150 150
200 Bahrain 12043 C 150 150
201 Bahrain 12044 A 150 150
202 Bahrain 12045 T 150 150
203 Bahrain 12046 A 150 150
204 Bahrain 12047 A 150 150
205 Bahrain 12048 A 150 150
206 Bahrain 12049 C 150 150
207 Bahrain 12050 A 150 150
208 Bahrain 12051 A 150 150
209 Bahrain 12052 G 150 150
210 Bahrain 12053 C 150 150
211 Bahrain 12054 T 150 150
212 Bahrain 12055 T 150 150
213 Bahrain 12056 T 150 150
214 Bahrain 12057 G 150 150
215 Bahrain 12058 T 150 150
216 Bahrain 12059 G 150 150
217 Bahrain 12060 A 150 150
218 Bahrain 12061 A 150 150
219 Bahrain 12062 G 150 150
220 Bahrain 12063 A 150 150
221 Bahrain 12064 A 150 150
222 Bahrain 12065 A 150 150
223 Bahrain 12066 T 150 150
224 Bahrain 12067 G 150 150
225 Bahrain 12068 C 150 150
226 Bahrain 12069 T 150 150
227 Bahrain 12070 G 150 150
228 Bahrain 12071 G 150 150
229 Bahrain 12072 A 150 150
230 Bahrain 12073 C 150 150
231 Bahrain 12074 A 150 150
232 Bahrain 12075 A 150 150
233 Bahrain 12076 C 150 150
234 Bahrain 12077 A 150 150
235 Bahrain 12078 G 150 150
236 Bahrain 12079 G 150 150
237 Bahrain 12080 G 150 150
238 Bahrain 12081 C 150 150
239 Bahrain 12082 A 150 150
240 Bahrain 12083 A 150 150
241 Bahrain 12084 C 150 150
242 Bahrain 12085 C 150 150
243 Bahrain 12086 T 150 150
244 Bahrain 12087 T 150 150
245 Bahrain 12088 A 150 150
246 Bahrain 12089 C 150 150
247 Bahrain 12090 A 150 150
248 Bahrain 12091 A 150 150