National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                 1  
C   9                                    
D   15     4                              
E   15           1                        
F   3                                    
G   3           1                        
H   3                                    
I   6                                    
K   18                       1   1        
L   45                                    
M   12               1                    
N   9                                    
Q   18                         1          
R   6                                    
S   30                   1                
T   12 1                                  
V   27                                 1  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Austria 11843 T 1339 1339
1 Austria 11844 C 1339 1339
2 Austria 11845 T 1339 1339
3 Austria 11846 A 1339 1339
4 Austria 11847 A 1339 1339
5 Austria 11848 A 1339 1339
6 Austria 11849 A 1339 1339
7 Austria 11850 T 1339 1339
8 Austria 11851 G T 1339 1338 Met3862Ile
9 Austria 11852 T 1339 1339
10 Austria 11853 C 1339 1339
11 Austria 11854 A 1339 1339
12 Austria 11855 G 1339 1339
13 Austria 11856 A 1339 1339
14 Austria 11857 T 1339 1339
15 Austria 11858 G 1339 1339
16 Austria 11859 T 1339 1339
17 Austria 11860 A 1339 1339
18 Austria 11861 A 1339 1339
19 Austria 11862 A 1339 1339
20 Austria 11863 G 1339 1339
21 Austria 11864 T 1339 1339
22 Austria 11865 G 1339 1339
23 Austria 11866 C 1339 1338
24 Austria 11867 A G 1339 1338 Thr3868Ala
25 Austria 11868 C 1339 1339
26 Austria 11869 A 1339 1339
27 Austria 11870 T 1339 1339
28 Austria 11871 C 1339 1339
29 Austria 11872 A 1339 1339
30 Austria 11873 G 1339 1339
31 Austria 11874 T 1339 1339
32 Austria 11875 A 1339 1339
33 Austria 11876 G 1339 1339
34 Austria 11877 T 1339 1339
35 Austria 11878 C 1339 1339
36 Austria 11879 T 1339 1339
37 Austria 11880 T 1339 1339
38 Austria 11881 A 1339 1339
39 Austria 11882 C 1339 1339
40 Austria 11883 T 1339 1339
41 Austria 11884 C 1339 1339
42 Austria 11885 T 1339 1339
43 Austria 11886 C 1339 1339
44 Austria 11887 A 1339 1339
45 Austria 11888 G 1339 1339
46 Austria 11889 T 1339 1339
47 Austria 11890 T 1344 1344
48 Austria 11891 T 1344 1344
49 Austria 11892 T 1344 1344
50 Austria 11893 G 1344 1344
51 Austria 11894 C 1344 1344
52 Austria 11895 A 1344 1344
53 Austria 11896 A 1344 1344
54 Austria 11897 C 1344 1344
55 Austria 11898 A 1344 1344
56 Austria 11899 A 1344 1344
57 Austria 11900 C 1344 1344
58 Austria 11901 T 1344 1344
59 Austria 11902 C 1344 1344
60 Austria 11903 A 1344 1344
61 Austria 11904 G 1344 1344
62 Austria 11905 A 1344 1344
63 Austria 11906 G 1344 1344
64 Austria 11907 T 1344 1344
65 Austria 11908 A 1344 1344
66 Austria 11909 G 1344 1344
67 Austria 11910 A 1344 1344
68 Austria 11911 A 1344 1344
69 Austria 11912 T 1344 1344
70 Austria 11913 C 1344 1344
71 Austria 11914 A 1344 1344
72 Austria 11915 T 1344 1344
73 Austria 11916 C T 1344 1342 Ser3884Leu
74 Austria 11917 A 1344 1344
75 Austria 11918 T 1344 1343
76 Austria 11919 C 1344 1344
77 Austria 11920 T 1344 1344
78 Austria 11921 A 1344 1344
79 Austria 11922 A 1344 1344
80 Austria 11923 A 1344 1344
81 Austria 11924 T 1344 1344
82 Austria 11925 T 1344 1344
83 Austria 11926 G 1344 1344
84 Austria 11927 T 1344 1344
85 Austria 11928 G 1343 1343
86 Austria 11929 G 1343 1343
87 Austria 11930 G 1343 1343
88 Austria 11931 C 1343 1343
89 Austria 11932 T 1343 1343
90 Austria 11933 C 1343 1343
91 Austria 11934 A 1343 1343
92 Austria 11935 A 1343 1343
93 Austria 11936 T 1343 1343
94 Austria 11937 G 1343 1343
95 Austria 11938 T 1343 1343
96 Austria 11939 G 1343 1343
97 Austria 11940 T 1343 1343
98 Austria 11941 C T 1343 1340 Val3892Val
99 Austria 11942 C 1343 1343
100 Austria 11943 A 1343 1343
101 Austria 11944 G 1343 1343
102 Austria 11945 T 1343 1343
103 Austria 11946 T 1343 1343
104 Austria 11947 A 1343 1343
105 Austria 11948 C 1343 1343
106 Austria 11949 A 1343 1343
107 Austria 11950 C 1343 1343
108 Austria 11951 A 1343 1343
109 Austria 11952 A 1343 1343
110 Austria 11953 T 1343 1343
111 Austria 11954 G 1343 1343
112 Austria 11955 A 1343 1343
113 Austria 11956 C T 1343 1341 Asp3897Asp
114 Austria 11957 A 1343 1343
115 Austria 11958 T 1343 1343
116 Austria 11959 T 1343 1343
117 Austria 11960 C 1343 1343
118 Austria 11961 T 1343 1343
119 Austria 11962 C 1343 1343
120 Austria 11963 T 1343 1343
121 Austria 11964 T 1343 1343
122 Austria 11965 A 1343 1343
123 Austria 11966 G 1343 1343
124 Austria 11967 C 1343 1343
125 Austria 11968 T 1343 1343
126 Austria 11969 A 1343 1343
127 Austria 11970 A 1343 1343
128 Austria 11971 A C 1343 1342 Lys3902Asn
129 Austria 11972 G 1343 1343
130 Austria 11973 A 1343 1343
131 Austria 11974 T C 1343 1335 Asp3903Asp
132 Austria 11975 A 1343 1343
133 Austria 11976 C 1343 1343
134 Austria 11977 T 1343 1343
135 Austria 11978 A 1343 1343
136 Austria 11979 C 1343 1343
137 Austria 11980 T 1343 1343
138 Austria 11981 G 1343 1343
139 Austria 11982 A 1343 1343
140 Austria 11983 A 1343 1343
141 Austria 11984 G 1343 1343
142 Austria 11985 C 1343 1343
143 Austria 11986 C 1343 1343
144 Austria 11987 T 1343 1343
145 Austria 11988 T 1343 1343
146 Austria 11989 T 1343 1343
147 Austria 11990 G 1343 1343
148 Austria 11991 A G 1343 1342 Glu3909Gly
149 Austria 11992 A 1343 1343
150 Austria 11993 A 1343 1343
151 Austria 11994 A 1343 1343
152 Austria 11995 A 1343 1343
153 Austria 11996 A 1343 1343
154 Austria 11997 T 1343 1343
155 Austria 11998 G 1343 1343
156 Austria 11999 G 1343 1342
157 Austria 12000 T 1343 1343
158 Austria 12001 T 1343 1343
159 Austria 12002 T 1343 1342
160 Austria 12003 C 1343 1343
161 Austria 12004 A 1343 1343
162 Austria 12005 C 1343 1343
163 Austria 12006 T 1343 1343
164 Austria 12007 A 1343 1343
165 Austria 12008 C 1343 1343
166 Austria 12009 T 1343 1343
167 Austria 12010 T 1343 1343
168 Austria 12011 T 1343 1343
169 Austria 12012 C 1343 1343
170 Austria 12013 T 1343 1342
171 Austria 12014 G 1343 1342
172 Austria 12015 T 1343 1343
173 Austria 12016 T 1343 1343
174 Austria 12017 T 1343 1343
175 Austria 12018 T 1343 1343
176 Austria 12019 G 1343 1343
177 Austria 12020 C 1343 1342
178 Austria 12021 T 1343 1343
179 Austria 12022 T 1343 1343
180 Austria 12023 T 1343 1343
181 Austria 12024 C 1343 1343
182 Austria 12025 C 1343 1343
183 Austria 12026 A 1343 1343
184 Austria 12027 T 1343 1343
185 Austria 12028 G 1343 1343
186 Austria 12029 C 1343 1343
187 Austria 12030 A 1343 1343
188 Austria 12031 G A 1343 1342 Gln3922Gln
189 Austria 12032 G 1343 1343
190 Austria 12033 G 1343 1343
191 Austria 12034 T C 1343 1342 Gly3923Gly
192 Austria 12035 G 1343 1343
193 Austria 12036 C 1343 1343
194 Austria 12037 T 1343 1343
195 Austria 12038 G 1343 1343
196 Austria 12039 T 1343 1343
197 Austria 12040 A 1343 1343
198 Austria 12041 G 1343 1343
199 Austria 12042 A 1343 1343
200 Austria 12043 C T 1343 1341 Asp3926Asp
201 Austria 12044 A 1343 1343
202 Austria 12045 T 1343 1343
203 Austria 12046 A 1343 1343
204 Austria 12047 A 1343 1343
205 Austria 12048 A 1343 1343
206 Austria 12049 C 1343 1343
207 Austria 12050 A 1343 1343
208 Austria 12051 A G 1343 1342 Lys3929Arg
209 Austria 12052 G 1343 1343
210 Austria 12053 C 1343 1343
211 Austria 12054 T 1343 1343
212 Austria 12055 T 1343 1343
213 Austria 12056 T 1343 1343
214 Austria 12057 G 1343 1343
215 Austria 12058 T 1343 1343
216 Austria 12059 G 1343 1343
217 Austria 12060 A 1343 1343
218 Austria 12061 A 1343 1343
219 Austria 12062 G 1343 1343
220 Austria 12063 A 1343 1343
221 Austria 12064 A 1343 1343
222 Austria 12065 A 1343 1343
223 Austria 12066 T 1343 1343
224 Austria 12067 G 1343 1343
225 Austria 12068 C 1343 1343
226 Austria 12069 T 1343 1342
227 Austria 12070 G 1343 1343
228 Austria 12071 G 1343 1343
229 Austria 12072 A 1343 1343
230 Austria 12073 C T 1343 1336 Asp3936Asp
231 Austria 12074 A 1343 1343
232 Austria 12075 A 1343 1343
233 Austria 12076 C 1343 1342
234 Austria 12077 A 1343 1343
235 Austria 12078 G 1343 1343
236 Austria 12079 G 1343 1343
237 Austria 12080 G 1343 1343
238 Austria 12081 C T 1343 1342 Ala3939Val
239 Austria 12082 A 1343 1343
240 Austria 12083 A 1343 1343
241 Austria 12084 C 1343 1343
242 Austria 12085 C 1343 1343
243 Austria 12086 T 1343 1343
244 Austria 12087 T 1343 1343
245 Austria 12088 A 1343 1343
246 Austria 12089 C 1343 1343
247 Austria 12090 A 1343 1343
248 Austria 12091 A 1343 1343