National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N Q R S T V W Y
*                                            
-     249                                      
?                                            
A     15     1                           1    
C     9   1                       1          
D     15     4                 1              
E     15                                      
F     3                                      
G     3                           1 1        
H     3             1                        
I     6               1                      
K     18                 1     2              
L     45         4     1   8 1           1    
M     12               1               1 1    
N     9                       2     1       1
Q 1   18             1                        
R     6                                      
S     30         1         2         1        
T     12 1             1               1      
V     27 1       1 1                     3    
W     3                                      
Y                                            

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Australia 11843 T 17227 17227
1 Australia 11844 C 17229 17227
2 Australia 11845 T 17229 17227
3 Australia 11846 A 17229 17226
4 Australia 11847 A 17229 17229
5 Australia 11848 A 17229 17227
6 Australia 11849 A G 17229 17227 Met3862Val
7 Australia 11850 T 17229 17229
8 Australia 11851 G 17229 17226
9 Australia 11852 T 17229 17228
10 Australia 11853 C 17229 17228
11 Australia 11854 A 17229 17228
12 Australia 11855 G 17229 17226
13 Australia 11856 A 17229 17229
14 Australia 11857 T C 17229 17227 Asp3864Asp
15 Australia 11858 G 17229 17228
16 Australia 11859 T 17229 17229
17 Australia 11860 A 17229 17226
18 Australia 11861 A 17229 17229
19 Australia 11862 A 17229 17224
20 Australia 11863 G T 17229 17226 Lys3866Asn
21 Australia 11864 T C 17229 17228 Cys3867Arg
22 Australia 11865 G 17229 17228
23 Australia 11866 C T 17229 17224 Cys3867Cys
24 Australia 11867 A 17230 17229
25 Australia 11868 C T 17230 17227 Thr3868Ile
26 Australia 11869 A 17231 17230
27 Australia 11870 T 17247 17247
28 Australia 11871 C 17262 17260
29 Australia 11872 A 17262 17262
30 Australia 11873 G 17264 17264
31 Australia 11874 T 17264 17264
32 Australia 11875 A 17264 17264
33 Australia 11876 G T 17267 17264 Val3871Phe
34 Australia 11877 T 17268 17268
35 Australia 11878 C 17268 17267
36 Australia 11879 T 17268 17268
37 Australia 11880 T 17268 17268
38 Australia 11881 A 17268 17268
39 Australia 11882 C T 17268 17264 Leu3873Phe
40 Australia 11883 T 17268 17268
41 Australia 11884 C A 17268 17265 Leu3873Leu
42 Australia 11885 T 17268 17266
43 Australia 11886 C T 17268 17262 Ser3874Leu
44 Australia 11887 A 17268 17266
45 Australia 11888 G 17268 17264
46 Australia 11889 T 17268 17263
47 Australia 11890 T 17275 17275
48 Australia 11891 T 17275 17275
49 Australia 11892 T 17275 17274
50 Australia 11893 G A 17275 17264 Leu3876Leu
51 Australia 11894 C 17276 17273
52 Australia 11895 A 17276 17276
53 Australia 11896 A 17276 17276
54 Australia 11897 C T 17276 17272 Gln3878*
55 Australia 11898 A 17276 17276
56 Australia 11899 A 17276 17276
57 Australia 11900 C A 17276 17275 Leu3879Ile
58 Australia 11901 T 17276 17276
59 Australia 11902 C T 17276 17252 Leu3879Leu
60 Australia 11903 A 17276 17276
61 Australia 11904 G 17276 17275
62 Australia 11905 A 17276 17276
63 Australia 11906 G 17276 17275
64 Australia 11907 T 17276 17276
65 Australia 11908 A G 17276 17271 Val3881Val
66 Australia 11909 G 17276 17275
67 Australia 11910 A 17276 17276
68 Australia 11911 A 17276 17276
69 Australia 11912 T 17276 17276
70 Australia 11913 C 17276 17275
71 Australia 11914 A 17276 17276
72 Australia 11915 T 17276 17275
73 Australia 11916 C T 17276 17256 Ser3884Leu
74 Australia 11917 A 17276 17276
75 Australia 11918 T 17276 17276
76 Australia 11919 C T 17276 17267 Ser3885Phe
77 Australia 11920 T 17276 17276
78 Australia 11921 A 17276 17275
79 Australia 11922 A 17276 17276
80 Australia 11923 A 17276 17275
81 Australia 11924 T 17276 17276
82 Australia 11925 T 17276 17276
83 Australia 11926 G A 17276 17270 Leu3887Leu
84 Australia 11927 T 17276 17275
85 Australia 11928 G 17274 17272
86 Australia 11929 G 17274 17271
87 Australia 11930 G 17274 17272
88 Australia 11931 C A 17274 17255 Ala3889Asp
89 Australia 11932 T 17274 17273
90 Australia 11933 C 17274 17271
91 Australia 11934 A 17274 17273
92 Australia 11935 A 17274 17273
93 Australia 11936 T 17273 17268
94 Australia 11937 G 17273 17265
95 Australia 11938 T 17268 17265
96 Australia 11939 G 17268 17263
97 Australia 11940 T C 17266 17260 Val3892Ala
98 Australia 11941 C T 17260 17229 Val3892Val
99 Australia 11942 C 17175 17139
100 Australia 11943 A 17160 17126
101 Australia 11944 G T 17158 17118 Gln3893His
102 Australia 11945 T G 17157 17125 Leu3894Val
103 Australia 11946 T 17157 17130
104 Australia 11947 A 17157 17134
105 Australia 11948 C 17157 17136
106 Australia 11949 A 17157 17137
107 Australia 11950 C T 17157 17135 His3895His
108 Australia 11951 A 17157 17138
109 Australia 11952 A 17157 17135
110 Australia 11953 T 17157 17139
111 Australia 11954 G 17157 17137
112 Australia 11955 A 17157 17140
113 Australia 11956 C T 17156 17127 Asp3897Asp
114 Australia 11957 A 17154 17134
115 Australia 11958 T 17153 17133
116 Australia 11959 T C 17152 17131 Ile3898Ile
117 Australia 11960 C 17152 17129
118 Australia 11961 T 17151 17133
119 Australia 11962 C T 17151 17132 Leu3899Leu
120 Australia 11963 T 17151 17138
121 Australia 11964 T 17150 17137
122 Australia 11965 A 17150 17139
123 Australia 11966 G 17150 17139
124 Australia 11967 C 17150 17132
125 Australia 11968 T 17150 17139
126 Australia 11969 A 17150 17134
127 Australia 11970 A 17150 17139
128 Australia 11971 A 17150 17140
129 Australia 11972 G 17150 17140
130 Australia 11973 A 17150 17140
131 Australia 11974 T 17150 17138
132 Australia 11975 A 17150 17140
133 Australia 11976 C 17150 17142
134 Australia 11977 T 17150 17143
135 Australia 11978 A 17150 17142
136 Australia 11979 C 17150 17144
137 Australia 11980 T 17150 17145
138 Australia 11981 G 17150 17143
139 Australia 11982 A 17150 17143
140 Australia 11983 A 17150 17145
141 Australia 11984 G 17150 17147
142 Australia 11985 C 17150 17147
143 Australia 11986 C 17150 17148
144 Australia 11987 T 17150 17144
145 Australia 11988 T 17150 17147
146 Australia 11989 T 17150 17147
147 Australia 11990 G 17150 17149
148 Australia 11991 A 17150 17141
149 Australia 11992 A 17151 17148
150 Australia 11993 A 17151 17151
151 Australia 11994 A 17151 17151
152 Australia 11995 A G 17150 17149 Lys3910Lys
153 Australia 11996 A 17150 17149
154 Australia 11997 T 17150 17148
155 Australia 11998 G 17150 17146
156 Australia 11999 G 17150 17148
157 Australia 12000 T 17150 17149
158 Australia 12001 T 17150 17150
159 Australia 12002 T 17150 17149
160 Australia 12003 C 17150 17150
161 Australia 12004 A 17150 17150
162 Australia 12005 C 17150 17146
163 Australia 12006 T 17150 17150
164 Australia 12007 A 17150 17149
165 Australia 12008 C T 17150 17143 Leu3915Phe
166 Australia 12009 T 17150 17150
167 Australia 12010 T A 17150 17148 Leu3915Leu
168 Australia 12011 T 17150 17148
169 Australia 12012 C 17150 17147
170 Australia 12013 T 17150 17148
171 Australia 12014 G 17149 17147
172 Australia 12015 T G 17149 17146 Val3917Gly
173 Australia 12016 T 17149 17147
174 Australia 12017 T 17149 17147
175 Australia 12018 T 17149 17147
176 Australia 12019 G A 17149 17143 Leu3918Leu
177 Australia 12020 C T 17149 17144 Leu3919Phe
178 Australia 12021 T 17149 17141
179 Australia 12022 T 17149 17148
180 Australia 12023 T 17149 17148
181 Australia 12024 C 17149 17148
182 Australia 12025 C T 17149 17141 Ser3920Ser
183 Australia 12026 A 17149 17148
184 Australia 12027 T 17149 17148
185 Australia 12028 G 17148 17145
186 Australia 12029 C 17148 17146
187 Australia 12030 A 17147 17146
188 Australia 12031 G 17147 17143
189 Australia 12032 G C,A 17146 17137 Gly3923Arg-p.Gly3923Ser
190 Australia 12033 G 17145 17140
191 Australia 12034 T 17145 17144
192 Australia 12035 G 17145 17142
193 Australia 12036 C T 17145 17141 Ala3924Val
194 Australia 12037 T 17145 17143
195 Australia 12038 G 17145 17141
196 Australia 12039 T 17144 17142
197 Australia 12040 A G 17144 17140 Val3925Val
198 Australia 12041 G 17144 17107
199 Australia 12042 A 17144 17142
200 Australia 12043 C T 17144 17122 Asp3926Asp
201 Australia 12044 A 17144 17142
202 Australia 12045 T 17144 17142
203 Australia 12046 A 17144 17141
204 Australia 12047 A 17144 17142
205 Australia 12048 A 17144 17141
206 Australia 12049 C T 17144 17138 Asn3928Asn
207 Australia 12050 A 17143 17141
208 Australia 12051 A 17143 17141
209 Australia 12052 G T 17143 17133 Lys3929Asn
210 Australia 12053 C T 17143 17123 Leu3930Phe
211 Australia 12054 T 17143 17137
212 Australia 12055 T 17143 17141
213 Australia 12056 T 17143 17140
214 Australia 12057 G 17143 17139
215 Australia 12058 T 17143 17141
216 Australia 12059 G 17143 17140
217 Australia 12060 A 17143 17143
218 Australia 12061 A 17142 17141
219 Australia 12062 G 17142 17138
220 Australia 12063 A 17142 17139
221 Australia 12064 A 17142 17142
222 Australia 12065 A 17142 17141
223 Australia 12066 T C 17141 17140 Met3934Thr
224 Australia 12067 G T 17141 17088 Met3934Ile
225 Australia 12068 C A 17141 17133 Leu3935Met
226 Australia 12069 T 17141 17140
227 Australia 12070 G T 17140 17133 Leu3935Leu
228 Australia 12071 G A 17140 17132 Asp3936Asn
229 Australia 12072 A 17140 17140
230 Australia 12073 C T 17139 17131 Asp3936Asp
231 Australia 12074 A T 17139 17137 Asn3937Tyr
232 Australia 12075 A G 17139 17136 Asn3937Ser
233 Australia 12076 C T 17139 17129 Asn3937Asn
234 Australia 12077 A 17139 17139
235 Australia 12078 G 17139 17139
236 Australia 12079 G 17139 17138
237 Australia 12080 G 17139 17138
238 Australia 12081 C 17139 17138
239 Australia 12082 A 17139 17139
240 Australia 12083 A G 17139 17137 Thr3940Ala
241 Australia 12084 C 17139 17135
242 Australia 12085 C T 17139 17135 Thr3940Thr
243 Australia 12086 T 17139 17139
244 Australia 12087 T 17139 17139
245 Australia 12088 A 17139 17139
246 Australia 12089 C 17139 17137
247 Australia 12090 A 17139 17139
248 Australia 12091 A 17139 17139