National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Aruba 11843 T 11 11
1 Aruba 11844 C 11 11
2 Aruba 11845 T 11 11
3 Aruba 11846 A 11 11
4 Aruba 11847 A 11 11
5 Aruba 11848 A 11 11
6 Aruba 11849 A 11 11
7 Aruba 11850 T 11 11
8 Aruba 11851 G 11 11
9 Aruba 11852 T 11 11
10 Aruba 11853 C 11 11
11 Aruba 11854 A 11 11
12 Aruba 11855 G 11 11
13 Aruba 11856 A 11 11
14 Aruba 11857 T 11 11
15 Aruba 11858 G 11 11
16 Aruba 11859 T 11 11
17 Aruba 11860 A 11 11
18 Aruba 11861 A 11 11
19 Aruba 11862 A 11 11
20 Aruba 11863 G 11 11
21 Aruba 11864 T 11 11
22 Aruba 11865 G 11 11
23 Aruba 11866 C 11 11
24 Aruba 11867 A 11 11
25 Aruba 11868 C 11 11
26 Aruba 11869 A 11 11
27 Aruba 11870 T 11 11
28 Aruba 11871 C 11 11
29 Aruba 11872 A 11 11
30 Aruba 11873 G 11 11
31 Aruba 11874 T 11 11
32 Aruba 11875 A 11 11
33 Aruba 11876 G 11 11
34 Aruba 11877 T 11 11
35 Aruba 11878 C 11 11
36 Aruba 11879 T 11 11
37 Aruba 11880 T 11 11
38 Aruba 11881 A 11 11
39 Aruba 11882 C 11 11
40 Aruba 11883 T 11 11
41 Aruba 11884 C 11 11
42 Aruba 11885 T 11 11
43 Aruba 11886 C 11 11
44 Aruba 11887 A 11 11
45 Aruba 11888 G 11 11
46 Aruba 11889 T 11 11
47 Aruba 11890 T 11 11
48 Aruba 11891 T 11 11
49 Aruba 11892 T 11 11
50 Aruba 11893 G 11 11
51 Aruba 11894 C 11 11
52 Aruba 11895 A 11 11
53 Aruba 11896 A 11 11
54 Aruba 11897 C 11 11
55 Aruba 11898 A 11 11
56 Aruba 11899 A 11 11
57 Aruba 11900 C 11 11
58 Aruba 11901 T 11 11
59 Aruba 11902 C 11 11
60 Aruba 11903 A 11 11
61 Aruba 11904 G 11 11
62 Aruba 11905 A 11 11
63 Aruba 11906 G 11 11
64 Aruba 11907 T 11 11
65 Aruba 11908 A 11 11
66 Aruba 11909 G 11 11
67 Aruba 11910 A 11 11
68 Aruba 11911 A 11 11
69 Aruba 11912 T 11 11
70 Aruba 11913 C 11 11
71 Aruba 11914 A 11 11
72 Aruba 11915 T 11 11
73 Aruba 11916 C 11 11
74 Aruba 11917 A 11 11
75 Aruba 11918 T 11 11
76 Aruba 11919 C 11 11
77 Aruba 11920 T 11 11
78 Aruba 11921 A 11 11
79 Aruba 11922 A 11 11
80 Aruba 11923 A 11 11
81 Aruba 11924 T 11 11
82 Aruba 11925 T 11 11
83 Aruba 11926 G 11 11
84 Aruba 11927 T 11 11
85 Aruba 11928 G 11 11
86 Aruba 11929 G 11 11
87 Aruba 11930 G 11 11
88 Aruba 11931 C 11 11
89 Aruba 11932 T 11 11
90 Aruba 11933 C 11 11
91 Aruba 11934 A 11 11
92 Aruba 11935 A 11 11
93 Aruba 11936 T 11 11
94 Aruba 11937 G 11 11
95 Aruba 11938 T 11 11
96 Aruba 11939 G 11 11
97 Aruba 11940 T 11 11
98 Aruba 11941 C 11 11
99 Aruba 11942 C 11 11
100 Aruba 11943 A 11 11
101 Aruba 11944 G 11 11
102 Aruba 11945 T 11 11
103 Aruba 11946 T 11 11
104 Aruba 11947 A 11 11
105 Aruba 11948 C 11 11
106 Aruba 11949 A 11 11
107 Aruba 11950 C 11 11
108 Aruba 11951 A 11 11
109 Aruba 11952 A 11 11
110 Aruba 11953 T 11 11
111 Aruba 11954 G 11 11
112 Aruba 11955 A 11 11
113 Aruba 11956 C 11 11
114 Aruba 11957 A 11 11
115 Aruba 11958 T 11 11
116 Aruba 11959 T 11 11
117 Aruba 11960 C 11 11
118 Aruba 11961 T 11 11
119 Aruba 11962 C 11 11
120 Aruba 11963 T 11 11
121 Aruba 11964 T 11 11
122 Aruba 11965 A 11 11
123 Aruba 11966 G 11 11
124 Aruba 11967 C 11 11
125 Aruba 11968 T 11 11
126 Aruba 11969 A 11 11
127 Aruba 11970 A 11 11
128 Aruba 11971 A 11 11
129 Aruba 11972 G 11 11
130 Aruba 11973 A 11 11
131 Aruba 11974 T 11 11
132 Aruba 11975 A 11 11
133 Aruba 11976 C 11 11
134 Aruba 11977 T 11 11
135 Aruba 11978 A 11 11
136 Aruba 11979 C 11 11
137 Aruba 11980 T 11 11
138 Aruba 11981 G 11 11
139 Aruba 11982 A 11 11
140 Aruba 11983 A 11 11
141 Aruba 11984 G 11 11
142 Aruba 11985 C 11 11
143 Aruba 11986 C 11 11
144 Aruba 11987 T 11 11
145 Aruba 11988 T 11 11
146 Aruba 11989 T 11 11
147 Aruba 11990 G 11 11
148 Aruba 11991 A 11 11
149 Aruba 11992 A 11 11
150 Aruba 11993 A 11 11
151 Aruba 11994 A 11 11
152 Aruba 11995 A 11 11
153 Aruba 11996 A 11 11
154 Aruba 11997 T 11 11
155 Aruba 11998 G 11 11
156 Aruba 11999 G 11 11
157 Aruba 12000 T 11 11
158 Aruba 12001 T 11 11
159 Aruba 12002 T 11 11
160 Aruba 12003 C 11 11
161 Aruba 12004 A 11 11
162 Aruba 12005 C 11 11
163 Aruba 12006 T 11 11
164 Aruba 12007 A 11 11
165 Aruba 12008 C 11 11
166 Aruba 12009 T 11 11
167 Aruba 12010 T 11 11
168 Aruba 12011 T 11 11
169 Aruba 12012 C 11 11
170 Aruba 12013 T 11 11
171 Aruba 12014 G 11 11
172 Aruba 12015 T 11 11
173 Aruba 12016 T 11 11
174 Aruba 12017 T 11 11
175 Aruba 12018 T 11 11
176 Aruba 12019 G 11 11
177 Aruba 12020 C 11 11
178 Aruba 12021 T 11 11
179 Aruba 12022 T 11 11
180 Aruba 12023 T 11 11
181 Aruba 12024 C 11 11
182 Aruba 12025 C 11 11
183 Aruba 12026 A 11 11
184 Aruba 12027 T 11 11
185 Aruba 12028 G 11 11
186 Aruba 12029 C 11 11
187 Aruba 12030 A 11 11
188 Aruba 12031 G 11 11
189 Aruba 12032 G 11 11
190 Aruba 12033 G 11 11
191 Aruba 12034 T 11 11
192 Aruba 12035 G 11 11
193 Aruba 12036 C 11 11
194 Aruba 12037 T 11 11
195 Aruba 12038 G 11 11
196 Aruba 12039 T 11 11
197 Aruba 12040 A 11 11
198 Aruba 12041 G 11 11
199 Aruba 12042 A 11 11
200 Aruba 12043 C 11 11
201 Aruba 12044 A 11 11
202 Aruba 12045 T 11 11
203 Aruba 12046 A 11 11
204 Aruba 12047 A 11 11
205 Aruba 12048 A 11 11
206 Aruba 12049 C 11 11
207 Aruba 12050 A 11 11
208 Aruba 12051 A 11 11
209 Aruba 12052 G 11 11
210 Aruba 12053 C 11 11
211 Aruba 12054 T 11 11
212 Aruba 12055 T 11 11
213 Aruba 12056 T 11 11
214 Aruba 12057 G 11 11
215 Aruba 12058 T 11 11
216 Aruba 12059 G 11 11
217 Aruba 12060 A 11 11
218 Aruba 12061 A 11 11
219 Aruba 12062 G 11 11
220 Aruba 12063 A 11 11
221 Aruba 12064 A 11 11
222 Aruba 12065 A 11 11
223 Aruba 12066 T 11 11
224 Aruba 12067 G 11 11
225 Aruba 12068 C 11 11
226 Aruba 12069 T 11 11
227 Aruba 12070 G 11 11
228 Aruba 12071 G 11 11
229 Aruba 12072 A 11 11
230 Aruba 12073 C 11 11
231 Aruba 12074 A 11 11
232 Aruba 12075 A 11 11
233 Aruba 12076 C 11 11
234 Aruba 12077 A 11 11
235 Aruba 12078 G 11 11
236 Aruba 12079 G 11 11
237 Aruba 12080 G 11 11
238 Aruba 12081 C 11 11
239 Aruba 12082 A 11 11
240 Aruba 12083 A 11 11
241 Aruba 12084 C 11 11
242 Aruba 12085 C 11 11
243 Aruba 12086 T 11 11
244 Aruba 12087 T 11 11
245 Aruba 12088 A 11 11
246 Aruba 12089 C 11 11
247 Aruba 12090 A 11 11
248 Aruba 12091 A 11 11