National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Armenia 11843 T 3 3
1 Armenia 11844 C 3 3
2 Armenia 11845 T 3 3
3 Armenia 11846 A 3 3
4 Armenia 11847 A 3 3
5 Armenia 11848 A 3 3
6 Armenia 11849 A 3 3
7 Armenia 11850 T 3 3
8 Armenia 11851 G 3 3
9 Armenia 11852 T 3 3
10 Armenia 11853 C 3 3
11 Armenia 11854 A 3 3
12 Armenia 11855 G 3 3
13 Armenia 11856 A 3 3
14 Armenia 11857 T 3 3
15 Armenia 11858 G 3 3
16 Armenia 11859 T 3 3
17 Armenia 11860 A 3 3
18 Armenia 11861 A 3 3
19 Armenia 11862 A 3 3
20 Armenia 11863 G 3 3
21 Armenia 11864 T 3 3
22 Armenia 11865 G 3 3
23 Armenia 11866 C 3 3
24 Armenia 11867 A 3 3
25 Armenia 11868 C 3 3
26 Armenia 11869 A 3 3
27 Armenia 11870 T 3 3
28 Armenia 11871 C 3 3
29 Armenia 11872 A 3 3
30 Armenia 11873 G 3 3
31 Armenia 11874 T 3 3
32 Armenia 11875 A 3 3
33 Armenia 11876 G 3 3
34 Armenia 11877 T 3 3
35 Armenia 11878 C 3 3
36 Armenia 11879 T 3 3
37 Armenia 11880 T 3 3
38 Armenia 11881 A 3 3
39 Armenia 11882 C 3 3
40 Armenia 11883 T 3 3
41 Armenia 11884 C 3 3
42 Armenia 11885 T 3 3
43 Armenia 11886 C 3 3
44 Armenia 11887 A 3 3
45 Armenia 11888 G 3 3
46 Armenia 11889 T 3 3
47 Armenia 11890 T 3 3
48 Armenia 11891 T 3 3
49 Armenia 11892 T 3 3
50 Armenia 11893 G 3 3
51 Armenia 11894 C 3 3
52 Armenia 11895 A 3 3
53 Armenia 11896 A 3 3
54 Armenia 11897 C 3 3
55 Armenia 11898 A 3 3
56 Armenia 11899 A 3 3
57 Armenia 11900 C 3 3
58 Armenia 11901 T 3 3
59 Armenia 11902 C 3 3
60 Armenia 11903 A 3 3
61 Armenia 11904 G 3 3
62 Armenia 11905 A 3 3
63 Armenia 11906 G 3 3
64 Armenia 11907 T 3 3
65 Armenia 11908 A 3 3
66 Armenia 11909 G 3 3
67 Armenia 11910 A 3 3
68 Armenia 11911 A 3 3
69 Armenia 11912 T 3 3
70 Armenia 11913 C 3 3
71 Armenia 11914 A 3 3
72 Armenia 11915 T 3 3
73 Armenia 11916 C 3 3
74 Armenia 11917 A 3 3
75 Armenia 11918 T 3 3
76 Armenia 11919 C 3 3
77 Armenia 11920 T 3 3
78 Armenia 11921 A 3 3
79 Armenia 11922 A 3 3
80 Armenia 11923 A 3 3
81 Armenia 11924 T 3 3
82 Armenia 11925 T 3 3
83 Armenia 11926 G 3 3
84 Armenia 11927 T 3 3
85 Armenia 11928 G 3 3
86 Armenia 11929 G 3 3
87 Armenia 11930 G 3 3
88 Armenia 11931 C 3 3
89 Armenia 11932 T 3 3
90 Armenia 11933 C 3 3
91 Armenia 11934 A 3 3
92 Armenia 11935 A 3 3
93 Armenia 11936 T 3 3
94 Armenia 11937 G 3 3
95 Armenia 11938 T 3 3
96 Armenia 11939 G 3 3
97 Armenia 11940 T 3 3
98 Armenia 11941 C 3 3
99 Armenia 11942 C 3 3
100 Armenia 11943 A 3 3
101 Armenia 11944 G 3 3
102 Armenia 11945 T 3 3
103 Armenia 11946 T 3 3
104 Armenia 11947 A 3 3
105 Armenia 11948 C 3 3
106 Armenia 11949 A 3 3
107 Armenia 11950 C 3 3
108 Armenia 11951 A 3 3
109 Armenia 11952 A 3 3
110 Armenia 11953 T 3 3
111 Armenia 11954 G 3 3
112 Armenia 11955 A 3 3
113 Armenia 11956 C 3 3
114 Armenia 11957 A 3 3
115 Armenia 11958 T 3 3
116 Armenia 11959 T 3 3
117 Armenia 11960 C 3 3
118 Armenia 11961 T 3 3
119 Armenia 11962 C 3 3
120 Armenia 11963 T 3 3
121 Armenia 11964 T 3 3
122 Armenia 11965 A 3 3
123 Armenia 11966 G 3 3
124 Armenia 11967 C 3 3
125 Armenia 11968 T 3 3
126 Armenia 11969 A 3 3
127 Armenia 11970 A 3 3
128 Armenia 11971 A 3 3
129 Armenia 11972 G 3 3
130 Armenia 11973 A 3 3
131 Armenia 11974 T 3 3
132 Armenia 11975 A 3 3
133 Armenia 11976 C 3 3
134 Armenia 11977 T 3 3
135 Armenia 11978 A 3 3
136 Armenia 11979 C 3 3
137 Armenia 11980 T 3 3
138 Armenia 11981 G 3 3
139 Armenia 11982 A 3 3
140 Armenia 11983 A 3 3
141 Armenia 11984 G 3 3
142 Armenia 11985 C 3 3
143 Armenia 11986 C 3 3
144 Armenia 11987 T 3 3
145 Armenia 11988 T 3 3
146 Armenia 11989 T 3 3
147 Armenia 11990 G 3 3
148 Armenia 11991 A 3 3
149 Armenia 11992 A 3 3
150 Armenia 11993 A 3 3
151 Armenia 11994 A 3 3
152 Armenia 11995 A 3 3
153 Armenia 11996 A 3 3
154 Armenia 11997 T 3 3
155 Armenia 11998 G 3 3
156 Armenia 11999 G 3 3
157 Armenia 12000 T 3 3
158 Armenia 12001 T 3 3
159 Armenia 12002 T 3 3
160 Armenia 12003 C 3 3
161 Armenia 12004 A 3 3
162 Armenia 12005 C 3 3
163 Armenia 12006 T 3 3
164 Armenia 12007 A 3 3
165 Armenia 12008 C 3 3
166 Armenia 12009 T 3 3
167 Armenia 12010 T 3 3
168 Armenia 12011 T 3 3
169 Armenia 12012 C 3 3
170 Armenia 12013 T 3 3
171 Armenia 12014 G 3 3
172 Armenia 12015 T 3 3
173 Armenia 12016 T 3 3
174 Armenia 12017 T 3 3
175 Armenia 12018 T 3 3
176 Armenia 12019 G 3 3
177 Armenia 12020 C 3 3
178 Armenia 12021 T 3 3
179 Armenia 12022 T 3 3
180 Armenia 12023 T 3 3
181 Armenia 12024 C 3 3
182 Armenia 12025 C 3 3
183 Armenia 12026 A 3 3
184 Armenia 12027 T 3 3
185 Armenia 12028 G 3 3
186 Armenia 12029 C 3 3
187 Armenia 12030 A 3 3
188 Armenia 12031 G 3 3
189 Armenia 12032 G 3 3
190 Armenia 12033 G 3 3
191 Armenia 12034 T 3 3
192 Armenia 12035 G 3 3
193 Armenia 12036 C 3 3
194 Armenia 12037 T 3 3
195 Armenia 12038 G 3 3
196 Armenia 12039 T 3 3
197 Armenia 12040 A 3 3
198 Armenia 12041 G 3 3
199 Armenia 12042 A 3 3
200 Armenia 12043 C 3 3
201 Armenia 12044 A 3 3
202 Armenia 12045 T 3 3
203 Armenia 12046 A 3 3
204 Armenia 12047 A 3 3
205 Armenia 12048 A 3 3
206 Armenia 12049 C 3 3
207 Armenia 12050 A 3 3
208 Armenia 12051 A 3 3
209 Armenia 12052 G 3 3
210 Armenia 12053 C 3 3
211 Armenia 12054 T 3 3
212 Armenia 12055 T 3 3
213 Armenia 12056 T 3 3
214 Armenia 12057 G 3 3
215 Armenia 12058 T 3 3
216 Armenia 12059 G 3 3
217 Armenia 12060 A 3 3
218 Armenia 12061 A 3 3
219 Armenia 12062 G 3 3
220 Armenia 12063 A 3 3
221 Armenia 12064 A 3 3
222 Armenia 12065 A 3 3
223 Armenia 12066 T 3 3
224 Armenia 12067 G 3 3
225 Armenia 12068 C 3 3
226 Armenia 12069 T 3 3
227 Armenia 12070 G 3 3
228 Armenia 12071 G 3 3
229 Armenia 12072 A 3 3
230 Armenia 12073 C 3 3
231 Armenia 12074 A 3 3
232 Armenia 12075 A 3 3
233 Armenia 12076 C 3 3
234 Armenia 12077 A 3 3
235 Armenia 12078 G 3 3
236 Armenia 12079 G 3 3
237 Armenia 12080 G 3 3
238 Armenia 12081 C 3 3
239 Armenia 12082 A 3 3
240 Armenia 12083 A 3 3
241 Armenia 12084 C 3 3
242 Armenia 12085 C 3 3
243 Armenia 12086 T 3 3
244 Armenia 12087 T 3 3
245 Armenia 12088 A 3 3
246 Armenia 12089 C 3 3
247 Armenia 12090 A 3 3
248 Armenia 12091 A 3 3