National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Andorra 11843 T 1 1
1 Andorra 11844 C 1 1
2 Andorra 11845 T 1 1
3 Andorra 11846 A 1 1
4 Andorra 11847 A 1 1
5 Andorra 11848 A 1 1
6 Andorra 11849 A 1 1
7 Andorra 11850 T 1 1
8 Andorra 11851 G 1 1
9 Andorra 11852 T 1 1
10 Andorra 11853 C 1 1
11 Andorra 11854 A 1 1
12 Andorra 11855 G 1 1
13 Andorra 11856 A 1 1
14 Andorra 11857 T 1 1
15 Andorra 11858 G 1 1
16 Andorra 11859 T 1 1
17 Andorra 11860 A 1 1
18 Andorra 11861 A 1 1
19 Andorra 11862 A 1 1
20 Andorra 11863 G 1 1
21 Andorra 11864 T 1 1
22 Andorra 11865 G 1 1
23 Andorra 11866 C 1 1
24 Andorra 11867 A 1 1
25 Andorra 11868 C 1 1
26 Andorra 11869 A 1 1
27 Andorra 11870 T 1 1
28 Andorra 11871 C 1 1
29 Andorra 11872 A 1 1
30 Andorra 11873 G 1 1
31 Andorra 11874 T 1 1
32 Andorra 11875 A 1 1
33 Andorra 11876 G 1 1
34 Andorra 11877 T 1 1
35 Andorra 11878 C 1 1
36 Andorra 11879 T 1 1
37 Andorra 11880 T 1 1
38 Andorra 11881 A 1 1
39 Andorra 11882 C 1 1
40 Andorra 11883 T 1 1
41 Andorra 11884 C 1 1
42 Andorra 11885 T 1 1
43 Andorra 11886 C 1 1
44 Andorra 11887 A 1 1
45 Andorra 11888 G 1 1
46 Andorra 11889 T 1 1
47 Andorra 11890 T 1 1
48 Andorra 11891 T 1 1
49 Andorra 11892 T 1 1
50 Andorra 11893 G 1 1
51 Andorra 11894 C 1 1
52 Andorra 11895 A 1 1
53 Andorra 11896 A 1 1
54 Andorra 11897 C 1 1
55 Andorra 11898 A 1 1
56 Andorra 11899 A 1 1
57 Andorra 11900 C 1 1
58 Andorra 11901 T 1 1
59 Andorra 11902 C 1 1
60 Andorra 11903 A 1 1
61 Andorra 11904 G 1 1
62 Andorra 11905 A 1 1
63 Andorra 11906 G 1 1
64 Andorra 11907 T 1 1
65 Andorra 11908 A 1 1
66 Andorra 11909 G 1 1
67 Andorra 11910 A 1 1
68 Andorra 11911 A 1 1
69 Andorra 11912 T 1 1
70 Andorra 11913 C 1 1
71 Andorra 11914 A 1 1
72 Andorra 11915 T 1 1
73 Andorra 11916 C 1 1
74 Andorra 11917 A 1 1
75 Andorra 11918 T 1 1
76 Andorra 11919 C 1 1
77 Andorra 11920 T 1 1
78 Andorra 11921 A 1 1
79 Andorra 11922 A 1 1
80 Andorra 11923 A 1 1
81 Andorra 11924 T 1 1
82 Andorra 11925 T 1 1
83 Andorra 11926 G 1 1
84 Andorra 11927 T 1 1
85 Andorra 11928 G 1 1
86 Andorra 11929 G 1 1
87 Andorra 11930 G 1 1
88 Andorra 11931 C 1 1
89 Andorra 11932 T 1 1
90 Andorra 11933 C 1 1
91 Andorra 11934 A 1 1
92 Andorra 11935 A 1 1
93 Andorra 11936 T 1 1
94 Andorra 11937 G 1 1
95 Andorra 11938 T 1 1
96 Andorra 11939 G 1 1
97 Andorra 11940 T 1 1
98 Andorra 11941 C 1 1
99 Andorra 11942 C 1 1
100 Andorra 11943 A 1 1
101 Andorra 11944 G 1 1
102 Andorra 11945 T 1 1
103 Andorra 11946 T 1 1
104 Andorra 11947 A 1 1
105 Andorra 11948 C 1 1
106 Andorra 11949 A 1 1
107 Andorra 11950 C 1 1
108 Andorra 11951 A 1 1
109 Andorra 11952 A 1 1
110 Andorra 11953 T 1 1
111 Andorra 11954 G 1 1
112 Andorra 11955 A 1 1
113 Andorra 11956 C 1 1
114 Andorra 11957 A 1 1
115 Andorra 11958 T 1 1
116 Andorra 11959 T 1 1
117 Andorra 11960 C 1 1
118 Andorra 11961 T 1 1
119 Andorra 11962 C 1 1
120 Andorra 11963 T 1 1
121 Andorra 11964 T 1 1
122 Andorra 11965 A 1 1
123 Andorra 11966 G 1 1
124 Andorra 11967 C 1 1
125 Andorra 11968 T 1 1
126 Andorra 11969 A 1 1
127 Andorra 11970 A 1 1
128 Andorra 11971 A 1 1
129 Andorra 11972 G 1 1
130 Andorra 11973 A 1 1
131 Andorra 11974 T 1 1
132 Andorra 11975 A 1 1
133 Andorra 11976 C 1 1
134 Andorra 11977 T 1 1
135 Andorra 11978 A 1 1
136 Andorra 11979 C 1 1
137 Andorra 11980 T 1 1
138 Andorra 11981 G 1 1
139 Andorra 11982 A 1 1
140 Andorra 11983 A 1 1
141 Andorra 11984 G 1 1
142 Andorra 11985 C 1 1
143 Andorra 11986 C 1 1
144 Andorra 11987 T 1 1
145 Andorra 11988 T 1 1
146 Andorra 11989 T 1 1
147 Andorra 11990 G 1 1
148 Andorra 11991 A 1 1
149 Andorra 11992 A 1 1
150 Andorra 11993 A 1 1
151 Andorra 11994 A 1 1
152 Andorra 11995 A 1 1
153 Andorra 11996 A 1 1
154 Andorra 11997 T 1 1
155 Andorra 11998 G 1 1
156 Andorra 11999 G 1 1
157 Andorra 12000 T 1 1
158 Andorra 12001 T 1 1
159 Andorra 12002 T 1 1
160 Andorra 12003 C 1 1
161 Andorra 12004 A 1 1
162 Andorra 12005 C 1 1
163 Andorra 12006 T 1 1
164 Andorra 12007 A 1 1
165 Andorra 12008 C 1 1
166 Andorra 12009 T 1 1
167 Andorra 12010 T 1 1
168 Andorra 12011 T 1 1
169 Andorra 12012 C 1 1
170 Andorra 12013 T 1 1
171 Andorra 12014 G 1 1
172 Andorra 12015 T 1 1
173 Andorra 12016 T 1 1
174 Andorra 12017 T 1 1
175 Andorra 12018 T 1 1
176 Andorra 12019 G 1 1
177 Andorra 12020 C 1 1
178 Andorra 12021 T 1 1
179 Andorra 12022 T 1 1
180 Andorra 12023 T 1 1
181 Andorra 12024 C 1 1
182 Andorra 12025 C 1 1
183 Andorra 12026 A 1 1
184 Andorra 12027 T 1 1
185 Andorra 12028 G 1 1
186 Andorra 12029 C 1 1
187 Andorra 12030 A 1 1
188 Andorra 12031 G 1 1
189 Andorra 12032 G 1 1
190 Andorra 12033 G 1 1
191 Andorra 12034 T 1 1
192 Andorra 12035 G 1 1
193 Andorra 12036 C 1 1
194 Andorra 12037 T 1 1
195 Andorra 12038 G 1 1
196 Andorra 12039 T 1 1
197 Andorra 12040 A 1 1
198 Andorra 12041 G 1 1
199 Andorra 12042 A 1 1
200 Andorra 12043 C 1 1
201 Andorra 12044 A 1 1
202 Andorra 12045 T 1 1
203 Andorra 12046 A 1 1
204 Andorra 12047 A 1 1
205 Andorra 12048 A 1 1
206 Andorra 12049 C 1 1
207 Andorra 12050 A 1 1
208 Andorra 12051 A 1 1
209 Andorra 12052 G 1 1
210 Andorra 12053 C 1 1
211 Andorra 12054 T 1 1
212 Andorra 12055 T 1 1
213 Andorra 12056 T 1 1
214 Andorra 12057 G 1 1
215 Andorra 12058 T 1 1
216 Andorra 12059 G 1 1
217 Andorra 12060 A 1 1
218 Andorra 12061 A 1 1
219 Andorra 12062 G 1 1
220 Andorra 12063 A 1 1
221 Andorra 12064 A 1 1
222 Andorra 12065 A 1 1
223 Andorra 12066 T 1 1
224 Andorra 12067 G 1 1
225 Andorra 12068 C 1 1
226 Andorra 12069 T 1 1
227 Andorra 12070 G 1 1
228 Andorra 12071 G 1 1
229 Andorra 12072 A 1 1
230 Andorra 12073 C 1 1
231 Andorra 12074 A 1 1
232 Andorra 12075 A 1 1
233 Andorra 12076 C 1 1
234 Andorra 12077 A 1 1
235 Andorra 12078 G 1 1
236 Andorra 12079 G 1 1
237 Andorra 12080 G 1 1
238 Andorra 12081 C 1 1
239 Andorra 12082 A 1 1
240 Andorra 12083 A 1 1
241 Andorra 12084 C 1 1
242 Andorra 12085 C 1 1
243 Andorra 12086 T 1 1
244 Andorra 12087 T 1 1
245 Andorra 12088 A 1 1
246 Andorra 12089 C 1 1
247 Andorra 12090 A 1 1
248 Andorra 12091 A 1 1