National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                   1                
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Algeria 11843 T 18 18
1 Algeria 11844 C 18 18
2 Algeria 11845 T 18 18
3 Algeria 11846 A 18 18
4 Algeria 11847 A 18 18
5 Algeria 11848 A 18 18
6 Algeria 11849 A 18 18
7 Algeria 11850 T 18 18
8 Algeria 11851 G 18 18
9 Algeria 11852 T 18 18
10 Algeria 11853 C 18 18
11 Algeria 11854 A 18 18
12 Algeria 11855 G 18 18
13 Algeria 11856 A 18 18
14 Algeria 11857 T 18 18
15 Algeria 11858 G 18 18
16 Algeria 11859 T 18 18
17 Algeria 11860 A 18 18
18 Algeria 11861 A 18 18
19 Algeria 11862 A 18 18
20 Algeria 11863 G 18 18
21 Algeria 11864 T 18 18
22 Algeria 11865 G 18 18
23 Algeria 11866 C 18 18
24 Algeria 11867 A 18 18
25 Algeria 11868 C 18 18
26 Algeria 11869 A 18 18
27 Algeria 11870 T 18 18
28 Algeria 11871 C 18 18
29 Algeria 11872 A 18 18
30 Algeria 11873 G 18 18
31 Algeria 11874 T 18 18
32 Algeria 11875 A 18 18
33 Algeria 11876 G 18 18
34 Algeria 11877 T 18 18
35 Algeria 11878 C 18 18
36 Algeria 11879 T 18 18
37 Algeria 11880 T 18 18
38 Algeria 11881 A 18 18
39 Algeria 11882 C 18 18
40 Algeria 11883 T 18 18
41 Algeria 11884 C 18 18
42 Algeria 11885 T 18 18
43 Algeria 11886 C 18 18
44 Algeria 11887 A 18 18
45 Algeria 11888 G 18 18
46 Algeria 11889 T 18 18
47 Algeria 11890 T 18 18
48 Algeria 11891 T 18 18
49 Algeria 11892 T 18 18
50 Algeria 11893 G 18 18
51 Algeria 11894 C 18 18
52 Algeria 11895 A 18 18
53 Algeria 11896 A 18 18
54 Algeria 11897 C 18 18
55 Algeria 11898 A 18 18
56 Algeria 11899 A 18 18
57 Algeria 11900 C 18 18
58 Algeria 11901 T 18 18
59 Algeria 11902 C 18 18
60 Algeria 11903 A 18 18
61 Algeria 11904 G 18 18
62 Algeria 11905 A 18 18
63 Algeria 11906 G 18 18
64 Algeria 11907 T 18 18
65 Algeria 11908 A 18 18
66 Algeria 11909 G 18 18
67 Algeria 11910 A 18 18
68 Algeria 11911 A 18 18
69 Algeria 11912 T 18 18
70 Algeria 11913 C 18 18
71 Algeria 11914 A 18 18
72 Algeria 11915 T 18 18
73 Algeria 11916 C 18 18
74 Algeria 11917 A 18 18
75 Algeria 11918 T 18 18
76 Algeria 11919 C 18 18
77 Algeria 11920 T 18 18
78 Algeria 11921 A 18 18
79 Algeria 11922 A 18 18
80 Algeria 11923 A 18 18
81 Algeria 11924 T 18 18
82 Algeria 11925 T 18 18
83 Algeria 11926 G 18 18
84 Algeria 11927 T 18 18
85 Algeria 11928 G 18 18
86 Algeria 11929 G 18 18
87 Algeria 11930 G 18 18
88 Algeria 11931 C 18 18
89 Algeria 11932 T 18 18
90 Algeria 11933 C 18 18
91 Algeria 11934 A 18 18
92 Algeria 11935 A 18 18
93 Algeria 11936 T 18 18
94 Algeria 11937 G 18 18
95 Algeria 11938 T 18 18
96 Algeria 11939 G 18 18
97 Algeria 11940 T 18 18
98 Algeria 11941 C 18 18
99 Algeria 11942 C 18 18
100 Algeria 11943 A 18 18
101 Algeria 11944 G 18 18
102 Algeria 11945 T 18 18
103 Algeria 11946 T 18 18
104 Algeria 11947 A 18 18
105 Algeria 11948 C 18 18
106 Algeria 11949 A 18 18
107 Algeria 11950 C 18 18
108 Algeria 11951 A 18 18
109 Algeria 11952 A 18 18
110 Algeria 11953 T 18 18
111 Algeria 11954 G 18 18
112 Algeria 11955 A 18 18
113 Algeria 11956 C 18 18
114 Algeria 11957 A 18 18
115 Algeria 11958 T 18 18
116 Algeria 11959 T 18 18
117 Algeria 11960 C 18 18
118 Algeria 11961 T 18 18
119 Algeria 11962 C 18 18
120 Algeria 11963 T 18 18
121 Algeria 11964 T 18 18
122 Algeria 11965 A 18 18
123 Algeria 11966 G 18 18
124 Algeria 11967 C 18 18
125 Algeria 11968 T 18 18
126 Algeria 11969 A 18 18
127 Algeria 11970 A 18 18
128 Algeria 11971 A 18 18
129 Algeria 11972 G 18 18
130 Algeria 11973 A 18 18
131 Algeria 11974 T 18 18
132 Algeria 11975 A 18 18
133 Algeria 11976 C 18 18
134 Algeria 11977 T 18 18
135 Algeria 11978 A 18 18
136 Algeria 11979 C 18 18
137 Algeria 11980 T 18 18
138 Algeria 11981 G 18 18
139 Algeria 11982 A 18 18
140 Algeria 11983 A 18 18
141 Algeria 11984 G 18 18
142 Algeria 11985 C 18 18
143 Algeria 11986 C 18 18
144 Algeria 11987 T 18 18
145 Algeria 11988 T 18 18
146 Algeria 11989 T 18 18
147 Algeria 11990 G 18 18
148 Algeria 11991 A 18 18
149 Algeria 11992 A 18 18
150 Algeria 11993 A 18 18
151 Algeria 11994 A 18 18
152 Algeria 11995 A 18 18
153 Algeria 11996 A 18 18
154 Algeria 11997 T 18 18
155 Algeria 11998 G 18 18
156 Algeria 11999 G 18 18
157 Algeria 12000 T 18 18
158 Algeria 12001 T 18 18
159 Algeria 12002 T 18 18
160 Algeria 12003 C 18 18
161 Algeria 12004 A 18 18
162 Algeria 12005 C 18 18
163 Algeria 12006 T 18 18
164 Algeria 12007 A 18 18
165 Algeria 12008 C 18 18
166 Algeria 12009 T 18 18
167 Algeria 12010 T 18 18
168 Algeria 12011 T 18 18
169 Algeria 12012 C 18 18
170 Algeria 12013 T 18 18
171 Algeria 12014 G 18 18
172 Algeria 12015 T 18 18
173 Algeria 12016 T 18 18
174 Algeria 12017 T 18 18
175 Algeria 12018 T 18 18
176 Algeria 12019 G 18 18
177 Algeria 12020 C 18 18
178 Algeria 12021 T 18 18
179 Algeria 12022 T 18 18
180 Algeria 12023 T 18 18
181 Algeria 12024 C 18 18
182 Algeria 12025 C 18 18
183 Algeria 12026 A 18 18
184 Algeria 12027 T 18 18
185 Algeria 12028 G 18 18
186 Algeria 12029 C 18 18
187 Algeria 12030 A 18 18
188 Algeria 12031 G 18 18
189 Algeria 12032 G 18 18
190 Algeria 12033 G 18 18
191 Algeria 12034 T 18 18
192 Algeria 12035 G 18 18
193 Algeria 12036 C 18 18
194 Algeria 12037 T 18 18
195 Algeria 12038 G 18 18
196 Algeria 12039 T 18 18
197 Algeria 12040 A 18 18
198 Algeria 12041 G 18 18
199 Algeria 12042 A 18 18
200 Algeria 12043 C 18 18
201 Algeria 12044 A 18 18
202 Algeria 12045 T 18 18
203 Algeria 12046 A 18 18
204 Algeria 12047 A 18 18
205 Algeria 12048 A 18 18
206 Algeria 12049 C 18 18
207 Algeria 12050 A 18 18
208 Algeria 12051 A 18 18
209 Algeria 12052 G 18 18
210 Algeria 12053 C 18 18
211 Algeria 12054 T 18 18
212 Algeria 12055 T 18 18
213 Algeria 12056 T 18 18
214 Algeria 12057 G 18 18
215 Algeria 12058 T 18 18
216 Algeria 12059 G 18 18
217 Algeria 12060 A 18 18
218 Algeria 12061 A 18 18
219 Algeria 12062 G 18 18
220 Algeria 12063 A 18 18
221 Algeria 12064 A 18 18
222 Algeria 12065 A 18 18
223 Algeria 12066 T 18 18
224 Algeria 12067 G 18 18
225 Algeria 12068 C 18 18
226 Algeria 12069 T 18 18
227 Algeria 12070 G T 18 17 Leu3935Leu
228 Algeria 12071 G 18 18
229 Algeria 12072 A 18 18
230 Algeria 12073 C 18 18
231 Algeria 12074 A 18 18
232 Algeria 12075 A 18 18
233 Algeria 12076 C 18 18
234 Algeria 12077 A 18 18
235 Algeria 12078 G 18 18
236 Algeria 12079 G 18 18
237 Algeria 12080 G 18 18
238 Algeria 12081 C 18 18
239 Algeria 12082 A 18 18
240 Algeria 12083 A 18 18
241 Algeria 12084 C 18 18
242 Algeria 12085 C 18 18
243 Algeria 12086 T 18 18
244 Algeria 12087 T 18 18
245 Algeria 12088 A 18 18
246 Algeria 12089 C 18 18
247 Algeria 12090 A 18 18
248 Algeria 12091 A 18 18