National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Albania 11843 T 1 1
1 Albania 11844 C 1 1
2 Albania 11845 T 1 1
3 Albania 11846 A 1 1
4 Albania 11847 A 1 1
5 Albania 11848 A 1 1
6 Albania 11849 A 1 1
7 Albania 11850 T 1 1
8 Albania 11851 G 1 1
9 Albania 11852 T 1 1
10 Albania 11853 C 1 1
11 Albania 11854 A 1 1
12 Albania 11855 G 1 1
13 Albania 11856 A 1 1
14 Albania 11857 T 1 1
15 Albania 11858 G 1 1
16 Albania 11859 T 1 1
17 Albania 11860 A 1 1
18 Albania 11861 A 1 1
19 Albania 11862 A 1 1
20 Albania 11863 G 1 1
21 Albania 11864 T 1 1
22 Albania 11865 G 1 1
23 Albania 11866 C 1 1
24 Albania 11867 A 1 1
25 Albania 11868 C 1 1
26 Albania 11869 A 1 1
27 Albania 11870 T 1 1
28 Albania 11871 C 1 1
29 Albania 11872 A 1 1
30 Albania 11873 G 1 1
31 Albania 11874 T 1 1
32 Albania 11875 A 1 1
33 Albania 11876 G 1 1
34 Albania 11877 T 1 1
35 Albania 11878 C 1 1
36 Albania 11879 T 1 1
37 Albania 11880 T 1 1
38 Albania 11881 A 1 1
39 Albania 11882 C 1 1
40 Albania 11883 T 1 1
41 Albania 11884 C 1 1
42 Albania 11885 T 1 1
43 Albania 11886 C 1 1
44 Albania 11887 A 1 1
45 Albania 11888 G 1 1
46 Albania 11889 T 1 1
47 Albania 11890 T 1 1
48 Albania 11891 T 1 1
49 Albania 11892 T 1 1
50 Albania 11893 G 1 1
51 Albania 11894 C 1 1
52 Albania 11895 A 1 1
53 Albania 11896 A 1 1
54 Albania 11897 C 1 1
55 Albania 11898 A 1 1
56 Albania 11899 A 1 1
57 Albania 11900 C 1 1
58 Albania 11901 T 1 1
59 Albania 11902 C 1 1
60 Albania 11903 A 1 1
61 Albania 11904 G 1 1
62 Albania 11905 A 1 1
63 Albania 11906 G 1 1
64 Albania 11907 T 1 1
65 Albania 11908 A 1 1
66 Albania 11909 G 1 1
67 Albania 11910 A 1 1
68 Albania 11911 A 1 1
69 Albania 11912 T 1 1
70 Albania 11913 C 1 1
71 Albania 11914 A 1 1
72 Albania 11915 T 1 1
73 Albania 11916 C 1 1
74 Albania 11917 A 1 1
75 Albania 11918 T 1 1
76 Albania 11919 C 1 1
77 Albania 11920 T 1 1
78 Albania 11921 A 1 1
79 Albania 11922 A 1 1
80 Albania 11923 A 1 1
81 Albania 11924 T 1 1
82 Albania 11925 T 1 1
83 Albania 11926 G 1 1
84 Albania 11927 T 1 1
85 Albania 11928 G 1 1
86 Albania 11929 G 1 1
87 Albania 11930 G 1 1
88 Albania 11931 C 1 1
89 Albania 11932 T 1 1
90 Albania 11933 C 1 1
91 Albania 11934 A 1 1
92 Albania 11935 A 1 1
93 Albania 11936 T 1 1
94 Albania 11937 G 1 1
95 Albania 11938 T 1 1
96 Albania 11939 G 1 1
97 Albania 11940 T 1 1
98 Albania 11941 C 1 1
99 Albania 11942 C 1 1
100 Albania 11943 A 1 1
101 Albania 11944 G 1 1
102 Albania 11945 T 1 1
103 Albania 11946 T 1 1
104 Albania 11947 A 1 1
105 Albania 11948 C 1 1
106 Albania 11949 A 1 1
107 Albania 11950 C 1 1
108 Albania 11951 A 1 1
109 Albania 11952 A 1 1
110 Albania 11953 T 1 1
111 Albania 11954 G 1 1
112 Albania 11955 A 1 1
113 Albania 11956 C 1 1
114 Albania 11957 A 1 1
115 Albania 11958 T 1 1
116 Albania 11959 T 1 1
117 Albania 11960 C 1 1
118 Albania 11961 T 1 1
119 Albania 11962 C 1 1
120 Albania 11963 T 1 1
121 Albania 11964 T 1 1
122 Albania 11965 A 1 1
123 Albania 11966 G 1 1
124 Albania 11967 C 1 1
125 Albania 11968 T 1 1
126 Albania 11969 A 1 1
127 Albania 11970 A 1 1
128 Albania 11971 A 1 1
129 Albania 11972 G 1 1
130 Albania 11973 A 1 1
131 Albania 11974 T 1 1
132 Albania 11975 A 1 1
133 Albania 11976 C 1 1
134 Albania 11977 T 1 1
135 Albania 11978 A 1 1
136 Albania 11979 C 1 1
137 Albania 11980 T 1 1
138 Albania 11981 G 1 1
139 Albania 11982 A 1 1
140 Albania 11983 A 1 1
141 Albania 11984 G 1 1
142 Albania 11985 C 1 1
143 Albania 11986 C 1 1
144 Albania 11987 T 1 1
145 Albania 11988 T 1 1
146 Albania 11989 T 1 1
147 Albania 11990 G 1 1
148 Albania 11991 A 1 1
149 Albania 11992 A 1 1
150 Albania 11993 A 1 1
151 Albania 11994 A 1 1
152 Albania 11995 A 1 1
153 Albania 11996 A 1 1
154 Albania 11997 T 1 1
155 Albania 11998 G 1 1
156 Albania 11999 G 1 1
157 Albania 12000 T 1 1
158 Albania 12001 T 1 1
159 Albania 12002 T 1 1
160 Albania 12003 C 1 1
161 Albania 12004 A 1 1
162 Albania 12005 C 1 1
163 Albania 12006 T 1 1
164 Albania 12007 A 1 1
165 Albania 12008 C 1 1
166 Albania 12009 T 1 1
167 Albania 12010 T 1 1
168 Albania 12011 T 1 1
169 Albania 12012 C 1 1
170 Albania 12013 T 1 1
171 Albania 12014 G 1 1
172 Albania 12015 T 1 1
173 Albania 12016 T 1 1
174 Albania 12017 T 1 1
175 Albania 12018 T 1 1
176 Albania 12019 G 1 1
177 Albania 12020 C 1 1
178 Albania 12021 T 1 1
179 Albania 12022 T 1 1
180 Albania 12023 T 1 1
181 Albania 12024 C 1 1
182 Albania 12025 C 1 1
183 Albania 12026 A 1 1
184 Albania 12027 T 1 1
185 Albania 12028 G 1 1
186 Albania 12029 C 1 1
187 Albania 12030 A 1 1
188 Albania 12031 G 1 1
189 Albania 12032 G 1 1
190 Albania 12033 G 1 1
191 Albania 12034 T 1 1
192 Albania 12035 G 1 1
193 Albania 12036 C 1 1
194 Albania 12037 T 1 1
195 Albania 12038 G 1 1
196 Albania 12039 T 1 1
197 Albania 12040 A 1 1
198 Albania 12041 G 1 1
199 Albania 12042 A 1 1
200 Albania 12043 C 1 1
201 Albania 12044 A 1 1
202 Albania 12045 T 1 1
203 Albania 12046 A 1 1
204 Albania 12047 A 1 1
205 Albania 12048 A 1 1
206 Albania 12049 C 1 1
207 Albania 12050 A 1 1
208 Albania 12051 A 1 1
209 Albania 12052 G 1 1
210 Albania 12053 C 1 1
211 Albania 12054 T 1 1
212 Albania 12055 T 1 1
213 Albania 12056 T 1 1
214 Albania 12057 G 1 1
215 Albania 12058 T 1 1
216 Albania 12059 G 1 1
217 Albania 12060 A 1 1
218 Albania 12061 A 1 1
219 Albania 12062 G 1 1
220 Albania 12063 A 1 1
221 Albania 12064 A 1 1
222 Albania 12065 A 1 1
223 Albania 12066 T 1 1
224 Albania 12067 G 1 1
225 Albania 12068 C 1 1
226 Albania 12069 T 1 1
227 Albania 12070 G 1 1
228 Albania 12071 G 1 1
229 Albania 12072 A 1 1
230 Albania 12073 C 1 1
231 Albania 12074 A 1 1
232 Albania 12075 A 1 1
233 Albania 12076 C 1 1
234 Albania 12077 A 1 1
235 Albania 12078 G 1 1
236 Albania 12079 G 1 1
237 Albania 12080 G 1 1
238 Albania 12081 C 1 1
239 Albania 12082 A 1 1
240 Albania 12083 A 1 1
241 Albania 12084 C 1 1
242 Albania 12085 C 1 1
243 Albania 12086 T 1 1
244 Albania 12087 T 1 1
245 Albania 12088 A 1 1
246 Albania 12089 C 1 1
247 Albania 12090 A 1 1
248 Albania 12091 A 1 1