National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Zambia 13026 C 2 2
1 Zambia 13027 T 2 2
2 Zambia 13028 G 2 2
3 Zambia 13029 G 2 2
4 Zambia 13030 T 2 2
5 Zambia 13031 A 2 2
6 Zambia 13032 A 2 2
7 Zambia 13033 T 2 2
8 Zambia 13034 G 2 2
9 Zambia 13035 C 2 2
10 Zambia 13036 A 2 2
11 Zambia 13037 A 2 2
12 Zambia 13038 C 2 2
13 Zambia 13039 A 2 2
14 Zambia 13040 G 2 2
15 Zambia 13041 A 2 2
16 Zambia 13042 A 2 2
17 Zambia 13043 G 2 2
18 Zambia 13044 T 2 2
19 Zambia 13045 G 2 2
20 Zambia 13046 C 2 2
21 Zambia 13047 C 2 2
22 Zambia 13048 T 2 2
23 Zambia 13049 G 2 2
24 Zambia 13050 C 2 2
25 Zambia 13051 C 2 2
26 Zambia 13052 A 2 2
27 Zambia 13053 A 2 2
28 Zambia 13054 T 2 2
29 Zambia 13055 T 2 2
30 Zambia 13056 C 2 2
31 Zambia 13057 A 2 2
32 Zambia 13058 A 2 2
33 Zambia 13059 C 2 2
34 Zambia 13060 T 2 2
35 Zambia 13061 G 2 2
36 Zambia 13062 T 2 2
37 Zambia 13063 A 2 2
38 Zambia 13064 T 2 2
39 Zambia 13065 T 2 2
40 Zambia 13066 A 2 2
41 Zambia 13067 T 2 2
42 Zambia 13068 C 2 2
43 Zambia 13069 T 2 2
44 Zambia 13070 T 2 2
45 Zambia 13071 T 2 2
46 Zambia 13072 C 2 2
47 Zambia 13073 T 2 2
48 Zambia 13074 G 2 2
49 Zambia 13075 T 2 2
50 Zambia 13076 G 2 2
51 Zambia 13077 C 2 2
52 Zambia 13078 T 2 2
53 Zambia 13079 T 2 2
54 Zambia 13080 T 2 2
55 Zambia 13081 T 2 2
56 Zambia 13082 G 2 2
57 Zambia 13083 C 2 2
58 Zambia 13084 T 2 2
59 Zambia 13085 G 2 2
60 Zambia 13086 T 2 2
61 Zambia 13087 A 2 2
62 Zambia 13088 G 2 2
63 Zambia 13089 A 2 2
64 Zambia 13090 T 2 2
65 Zambia 13091 G 2 2
66 Zambia 13092 C 2 2
67 Zambia 13093 T 2 2
68 Zambia 13094 G 2 2
69 Zambia 13095 C 2 2
70 Zambia 13096 T 2 2
71 Zambia 13097 A 2 2
72 Zambia 13098 A 2 2
73 Zambia 13099 A 2 2
74 Zambia 13100 G 2 2
75 Zambia 13101 C 2 2
76 Zambia 13102 T 2 2
77 Zambia 13103 T 2 2
78 Zambia 13104 A 2 2
79 Zambia 13105 C 2 2
80 Zambia 13106 A 2 2
81 Zambia 13107 A 2 2
82 Zambia 13108 A 2 2
83 Zambia 13109 G 2 2
84 Zambia 13110 A 2 2
85 Zambia 13111 T 2 2
86 Zambia 13112 T 2 2
87 Zambia 13113 A 2 2
88 Zambia 13114 T 2 2
89 Zambia 13115 C 2 2
90 Zambia 13116 T 2 2
91 Zambia 13117 A 2 2
92 Zambia 13118 G 2 2
93 Zambia 13119 C 2 2
94 Zambia 13120 T 2 2
95 Zambia 13121 A 2 2
96 Zambia 13122 G 2 2
97 Zambia 13123 T 2 2
98 Zambia 13124 G 2 2
99 Zambia 13125 G 2 2
100 Zambia 13126 G 2 2
101 Zambia 13127 G 2 2
102 Zambia 13128 G 2 2
103 Zambia 13129 A 2 2
104 Zambia 13130 C 2 2
105 Zambia 13131 A 2 2
106 Zambia 13132 A 2 2
107 Zambia 13133 C 2 2
108 Zambia 13134 C 2 2
109 Zambia 13135 A 2 2
110 Zambia 13136 A 2 2
111 Zambia 13137 T 2 2
112 Zambia 13138 C 2 2
113 Zambia 13139 A 2 2
114 Zambia 13140 C 2 2
115 Zambia 13141 T 2 2
116 Zambia 13142 A 2 2
117 Zambia 13143 A 2 2
118 Zambia 13144 T 2 2
119 Zambia 13145 T 2 2
120 Zambia 13146 G 2 2
121 Zambia 13147 T 2 2
122 Zambia 13148 G 2 2
123 Zambia 13149 T 2 2
124 Zambia 13150 T 2 2
125 Zambia 13151 A 2 2
126 Zambia 13152 A 2 2
127 Zambia 13153 G 2 2
128 Zambia 13154 A 2 2
129 Zambia 13155 T 2 2
130 Zambia 13156 G 2 2
131 Zambia 13157 T 2 2
132 Zambia 13158 T 2 2
133 Zambia 13159 G 2 2
134 Zambia 13160 T 2 2
135 Zambia 13161 G 2 2
136 Zambia 13162 T 2 2
137 Zambia 13163 A 2 2
138 Zambia 13164 C 2 2
139 Zambia 13165 A 2 2
140 Zambia 13166 C 2 2
141 Zambia 13167 A 2 2
142 Zambia 13168 C 2 2
143 Zambia 13169 A 2 2
144 Zambia 13170 C 2 2
145 Zambia 13171 T 2 2
146 Zambia 13172 G 2 2
147 Zambia 13173 G 2 2
148 Zambia 13174 T 2 2
149 Zambia 13175 A 2 2
150 Zambia 13176 C 2 2
151 Zambia 13177 T 2 2
152 Zambia 13178 G 2 2
153 Zambia 13179 G 2 2
154 Zambia 13180 T 2 2
155 Zambia 13181 C 2 2
156 Zambia 13182 A 2 2
157 Zambia 13183 G 2 2
158 Zambia 13184 G 2 2
159 Zambia 13185 C 2 2
160 Zambia 13186 A 2 2
161 Zambia 13187 A 2 2
162 Zambia 13188 T 2 2
163 Zambia 13189 A 2 2
164 Zambia 13190 A 2 2
165 Zambia 13191 C 2 2
166 Zambia 13192 A 2 2
167 Zambia 13193 G 2 2
168 Zambia 13194 T 2 2
169 Zambia 13195 T 2 2
170 Zambia 13196 A 2 2
171 Zambia 13197 C 2 2
172 Zambia 13198 A 2 2
173 Zambia 13199 C 2 2
174 Zambia 13200 C 2 2
175 Zambia 13201 G 2 2
176 Zambia 13202 G 2 2
177 Zambia 13203 A 2 2
178 Zambia 13204 A 2 2
179 Zambia 13205 G 2 2
180 Zambia 13206 C 2 2
181 Zambia 13207 C 2 2
182 Zambia 13208 A 2 2
183 Zambia 13209 A 2 2
184 Zambia 13210 T 2 2
185 Zambia 13211 A 2 2
186 Zambia 13212 T 2 2
187 Zambia 13213 G 2 2
188 Zambia 13214 G 2 2
189 Zambia 13215 A 2 2
190 Zambia 13216 T 2 2
191 Zambia 13217 C 2 2
192 Zambia 13218 A 2 2
193 Zambia 13219 A 2 2
194 Zambia 13220 G 2 2
195 Zambia 13221 A 2 2
196 Zambia 13222 A 2 2
197 Zambia 13223 T 2 2
198 Zambia 13224 C 2 2
199 Zambia 13225 C 2 2
200 Zambia 13226 T 2 2
201 Zambia 13227 T 2 2
202 Zambia 13228 T 2 2
203 Zambia 13229 G 2 2
204 Zambia 13230 G 2 2
205 Zambia 13231 T 2 2
206 Zambia 13232 G 2 2
207 Zambia 13233 G 2 2
208 Zambia 13234 T 2 2
209 Zambia 13235 G 2 2
210 Zambia 13236 C 2 2
211 Zambia 13237 A 2 2
212 Zambia 13238 T 2 2
213 Zambia 13239 C 2 2
214 Zambia 13240 G 2 2
215 Zambia 13241 T 2 2
216 Zambia 13242 G 2 2
217 Zambia 13243 T 2 2
218 Zambia 13244 T 2 2
219 Zambia 13245 G 2 2
220 Zambia 13246 T 2 2
221 Zambia 13247 C 2 2
222 Zambia 13248 T 2 2
223 Zambia 13249 G 2 2
224 Zambia 13250 T 2 2
225 Zambia 13251 A 2 2
226 Zambia 13252 C 2 2
227 Zambia 13253 T 2 2
228 Zambia 13254 G 2 2
229 Zambia 13255 C 2 2
230 Zambia 13256 C 2 2
231 Zambia 13257 G 2 2
232 Zambia 13258 T 2 2
233 Zambia 13259 T 2 2
234 Zambia 13260 G 2 2
235 Zambia 13261 C 2 2
236 Zambia 13262 C 2 2
237 Zambia 13263 A 2 2
238 Zambia 13264 C 2 2
239 Zambia 13265 A 2 2
240 Zambia 13266 T 2 2
241 Zambia 13267 A 2 2
242 Zambia 13268 G 2 2
243 Zambia 13269 A 2 2
244 Zambia 13270 T 2 2
245 Zambia 13271 C 2 2
246 Zambia 13272 A 2 2
247 Zambia 13273 T 2 2
248 Zambia 13274 C 2 2
249 Zambia 13275 C 2 2
250 Zambia 13276 A 2 2
251 Zambia 13277 A 2 2
252 Zambia 13278 A 2 2
253 Zambia 13279 T 2 2
254 Zambia 13280 C 2 2
255 Zambia 13281 C 2 2
256 Zambia 13282 T 2 2
257 Zambia 13283 A 2 2
258 Zambia 13284 A 2 2
259 Zambia 13285 A 2 2
260 Zambia 13286 G 2 2
261 Zambia 13287 G 2 2
262 Zambia 13288 A 2 2
263 Zambia 13289 T 2 2
264 Zambia 13290 T 2 2
265 Zambia 13291 T 2 2
266 Zambia 13292 T 2 2
267 Zambia 13293 G 2 2
268 Zambia 13294 T 2 2
269 Zambia 13295 G 2 2
270 Zambia 13296 A 2 2
271 Zambia 13297 C 2 2
272 Zambia 13298 T 2 2
273 Zambia 13299 T 2 2
274 Zambia 13300 A 2 2
275 Zambia 13301 A 2 2
276 Zambia 13302 A 2 2
277 Zambia 13303 A 2 2
278 Zambia 13304 G 2 2
279 Zambia 13305 G 2 2
280 Zambia 13306 T 2 2
281 Zambia 13307 A 2 2
282 Zambia 13308 A 2 2
283 Zambia 13309 G 2 2
284 Zambia 13310 T 2 2
285 Zambia 13311 A 2 2
286 Zambia 13312 T 2 2
287 Zambia 13313 G 2 2
288 Zambia 13314 T 2 2
289 Zambia 13315 A 2 2
290 Zambia 13316 C 2 2
291 Zambia 13317 A 2 2
292 Zambia 13318 A 2 2
293 Zambia 13319 A 2 2
294 Zambia 13320 T 2 2
295 Zambia 13321 A 2 2
296 Zambia 13322 C 2 2
297 Zambia 13323 C 2 2
298 Zambia 13324 T 2 2
299 Zambia 13325 A 2 2
300 Zambia 13326 C 2 2
301 Zambia 13327 A 2 2
302 Zambia 13328 A 2 2
303 Zambia 13329 C 2 2
304 Zambia 13330 T 2 2
305 Zambia 13331 T 2 2
306 Zambia 13332 G 2 2
307 Zambia 13333 T 2 2
308 Zambia 13334 G 2 2
309 Zambia 13335 C 2 2
310 Zambia 13336 T 2 2
311 Zambia 13337 A 2 2
312 Zambia 13338 A 2 2
313 Zambia 13339 T 2 2
314 Zambia 13340 G 2 2
315 Zambia 13341 A 2 2
316 Zambia 13342 C 2 2
317 Zambia 13343 C 2 2
318 Zambia 13344 C 2 2
319 Zambia 13345 T 2 2
320 Zambia 13346 G 2 2
321 Zambia 13347 T 2 2
322 Zambia 13348 G 2 2
323 Zambia 13349 G 2 2
324 Zambia 13350 G 2 2
325 Zambia 13351 T 2 2
326 Zambia 13352 T 2 2
327 Zambia 13353 T 2 2
328 Zambia 13354 T 2 2
329 Zambia 13355 A 2 2
330 Zambia 13356 C 2 2
331 Zambia 13357 A 2 2
332 Zambia 13358 C 2 2
333 Zambia 13359 T 2 2
334 Zambia 13360 T 2 2
335 Zambia 13361 A 2 2
336 Zambia 13362 A 2 2
337 Zambia 13363 A 2 2
338 Zambia 13364 A 2 2
339 Zambia 13365 A 2 2
340 Zambia 13366 C 2 2
341 Zambia 13367 A 2 2
342 Zambia 13368 C 2 2
343 Zambia 13369 A 2 2
344 Zambia 13370 G 2 2
345 Zambia 13371 T 2 2
346 Zambia 13372 C 2 2
347 Zambia 13373 T 2 2
348 Zambia 13374 G 2 2
349 Zambia 13375 T 2 2
350 Zambia 13376 A 2 2
351 Zambia 13377 C 2 2
352 Zambia 13378 C 2 2
353 Zambia 13379 G 2 2
354 Zambia 13380 T 2 2
355 Zambia 13381 C 2 2
356 Zambia 13382 T 2 2
357 Zambia 13383 G 2 2
358 Zambia 13384 C 2 2
359 Zambia 13385 G 2 2
360 Zambia 13386 G 2 2
361 Zambia 13387 T 2 2
362 Zambia 13388 A 2 2
363 Zambia 13389 T 2 2
364 Zambia 13390 G 2 2
365 Zambia 13391 T 2 2
366 Zambia 13392 G 2 2
367 Zambia 13393 G 2 2
368 Zambia 13394 A 2 2
369 Zambia 13395 A 2 2
370 Zambia 13396 A 2 2
371 Zambia 13397 G 2 2
372 Zambia 13398 G 2 2
373 Zambia 13399 T 2 2
374 Zambia 13400 T 2 2
375 Zambia 13401 A 2 2
376 Zambia 13402 T 2 2
377 Zambia 13403 G 2 2
378 Zambia 13404 G 2 2
379 Zambia 13405 C 2 2
380 Zambia 13406 T 2 2
381 Zambia 13407 G 2 2
382 Zambia 13408 T 2 2
383 Zambia 13409 A 2 2
384 Zambia 13410 G 2 2
385 Zambia 13411 T 2 2
386 Zambia 13412 T 2 2
387 Zambia 13413 G 2 2
388 Zambia 13414 T 2 2
389 Zambia 13415 G 2 2
390 Zambia 13416 A 2 2
391 Zambia 13417 T 2 2
392 Zambia 13418 C 2 2
393 Zambia 13419 A 2 2
394 Zambia 13420 A 2 2
395 Zambia 13421 C 2 2
396 Zambia 13422 T 2 2
397 Zambia 13423 C 2 2
398 Zambia 13424 C 2 2
399 Zambia 13425 G 2 2
400 Zambia 13426 C 2 2
401 Zambia 13427 G 2 2
402 Zambia 13428 A 2 2
403 Zambia 13429 A 2 2
404 Zambia 13430 C 2 2
405 Zambia 13431 C 2 2
406 Zambia 13432 C 2 2
407 Zambia 13433 A 2 2
408 Zambia 13434 T 2 2
409 Zambia 13435 G 2 2
410 Zambia 13436 C 2 2
411 Zambia 13437 T 2 2
412 Zambia 13438 T 2 2
413 Zambia 13439 C 2 2
414 Zambia 13440 A 2 2
415 Zambia 13441 G 2 2