National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24       1                                
L   24                                        
M   12                                        
N   21                                        
P   24                         1              
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Vietnam 13026 C 117 117
1 Vietnam 13027 T 117 117
2 Vietnam 13028 G 117 117
3 Vietnam 13029 G 117 117
4 Vietnam 13030 T 117 117
5 Vietnam 13031 A 117 117
6 Vietnam 13032 A 117 117
7 Vietnam 13033 T 117 117
8 Vietnam 13034 G 117 117
9 Vietnam 13035 C 117 117
10 Vietnam 13036 A 117 117
11 Vietnam 13037 A 117 117
12 Vietnam 13038 C 117 117
13 Vietnam 13039 A 117 117
14 Vietnam 13040 G 117 117
15 Vietnam 13041 A 117 117
16 Vietnam 13042 A 117 117
17 Vietnam 13043 G 117 117
18 Vietnam 13044 T 117 117
19 Vietnam 13045 G 117 117
20 Vietnam 13046 C 117 117
21 Vietnam 13047 C 117 117
22 Vietnam 13048 T C 117 116 Pro4261Pro
23 Vietnam 13049 G 117 117
24 Vietnam 13050 C 117 117
25 Vietnam 13051 C 117 117
26 Vietnam 13052 A 117 117
27 Vietnam 13053 A 117 117
28 Vietnam 13054 T 117 117
29 Vietnam 13055 T 117 117
30 Vietnam 13056 C 117 117
31 Vietnam 13057 A 117 117
32 Vietnam 13058 A 117 117
33 Vietnam 13059 C 117 117
34 Vietnam 13060 T 117 117
35 Vietnam 13061 G 117 117
36 Vietnam 13062 T 117 117
37 Vietnam 13063 A 117 117
38 Vietnam 13064 T 117 117
39 Vietnam 13065 T 117 117
40 Vietnam 13066 A 117 117
41 Vietnam 13067 T 117 117
42 Vietnam 13068 C 117 117
43 Vietnam 13069 T 117 117
44 Vietnam 13070 T 117 117
45 Vietnam 13071 T 117 117
46 Vietnam 13072 C 117 117
47 Vietnam 13073 T 117 117
48 Vietnam 13074 G 117 117
49 Vietnam 13075 T 117 117
50 Vietnam 13076 G 117 117
51 Vietnam 13077 C 117 117
52 Vietnam 13078 T 117 117
53 Vietnam 13079 T 117 117
54 Vietnam 13080 T 117 117
55 Vietnam 13081 T 117 117
56 Vietnam 13082 G 117 117
57 Vietnam 13083 C 117 117
58 Vietnam 13084 T 117 117
59 Vietnam 13085 G 117 117
60 Vietnam 13086 T 117 117
61 Vietnam 13087 A 117 117
62 Vietnam 13088 G 117 117
63 Vietnam 13089 A 117 117
64 Vietnam 13090 T 117 117
65 Vietnam 13091 G 117 117
66 Vietnam 13092 C 117 117
67 Vietnam 13093 T 117 117
68 Vietnam 13094 G 117 117
69 Vietnam 13095 C 117 117
70 Vietnam 13096 T 117 117
71 Vietnam 13097 A 117 117
72 Vietnam 13098 A 117 117
73 Vietnam 13099 A 117 117
74 Vietnam 13100 G 117 117
75 Vietnam 13101 C 117 117
76 Vietnam 13102 T 117 117
77 Vietnam 13103 T 117 117
78 Vietnam 13104 A 117 117
79 Vietnam 13105 C 117 117
80 Vietnam 13106 A 117 117
81 Vietnam 13107 A 117 117
82 Vietnam 13108 A 117 117
83 Vietnam 13109 G 117 117
84 Vietnam 13110 A 117 117
85 Vietnam 13111 T 117 117
86 Vietnam 13112 T 117 117
87 Vietnam 13113 A 117 117
88 Vietnam 13114 T 117 117
89 Vietnam 13115 C 117 117
90 Vietnam 13116 T 117 117
91 Vietnam 13117 A 117 117
92 Vietnam 13118 G 117 117
93 Vietnam 13119 C 117 117
94 Vietnam 13120 T 117 117
95 Vietnam 13121 A 117 117
96 Vietnam 13122 G 117 117
97 Vietnam 13123 T 117 117
98 Vietnam 13124 G 117 117
99 Vietnam 13125 G 117 117
100 Vietnam 13126 G 117 117
101 Vietnam 13127 G 117 117
102 Vietnam 13128 G 117 117
103 Vietnam 13129 A 117 117
104 Vietnam 13130 C 117 117
105 Vietnam 13131 A 117 117
106 Vietnam 13132 A 117 117
107 Vietnam 13133 C 117 117
108 Vietnam 13134 C 117 117
109 Vietnam 13135 A 117 117
110 Vietnam 13136 A 117 117
111 Vietnam 13137 T 117 117
112 Vietnam 13138 C 117 117
113 Vietnam 13139 A 117 117
114 Vietnam 13140 C 117 117
115 Vietnam 13141 T 117 117
116 Vietnam 13142 A 117 117
117 Vietnam 13143 A 117 117
118 Vietnam 13144 T 117 117
119 Vietnam 13145 T 117 117
120 Vietnam 13146 G 117 117
121 Vietnam 13147 T 117 117
122 Vietnam 13148 G 117 117
123 Vietnam 13149 T 117 117
124 Vietnam 13150 T 117 117
125 Vietnam 13151 A G 117 116 Lys4296Glu
126 Vietnam 13152 A 117 117
127 Vietnam 13153 G 117 117
128 Vietnam 13154 A 117 117
129 Vietnam 13155 T 117 117
130 Vietnam 13156 G 117 117
131 Vietnam 13157 T 117 117
132 Vietnam 13158 T 117 117
133 Vietnam 13159 G 117 117
134 Vietnam 13160 T 117 117
135 Vietnam 13161 G 117 117
136 Vietnam 13162 T 117 117
137 Vietnam 13163 A 117 117
138 Vietnam 13164 C 117 117
139 Vietnam 13165 A 117 117
140 Vietnam 13166 C 117 117
141 Vietnam 13167 A 117 117
142 Vietnam 13168 C 117 117
143 Vietnam 13169 A 117 117
144 Vietnam 13170 C 117 117
145 Vietnam 13171 T 117 117
146 Vietnam 13172 G 117 117
147 Vietnam 13173 G 117 117
148 Vietnam 13174 T 117 117
149 Vietnam 13175 A 117 117
150 Vietnam 13176 C 117 117
151 Vietnam 13177 T 117 117
152 Vietnam 13178 G 117 117
153 Vietnam 13179 G 117 117
154 Vietnam 13180 T 117 117
155 Vietnam 13181 C 117 117
156 Vietnam 13182 A 117 117
157 Vietnam 13183 G 117 117
158 Vietnam 13184 G 117 117
159 Vietnam 13185 C 117 117
160 Vietnam 13186 A 117 117
161 Vietnam 13187 A 117 117
162 Vietnam 13188 T 117 117
163 Vietnam 13189 A 117 117
164 Vietnam 13190 A 117 117
165 Vietnam 13191 C 117 117
166 Vietnam 13192 A 117 117
167 Vietnam 13193 G 117 117
168 Vietnam 13194 T 117 117
169 Vietnam 13195 T 117 117
170 Vietnam 13196 A 117 117
171 Vietnam 13197 C 117 117
172 Vietnam 13198 A 117 117
173 Vietnam 13199 C 117 117
174 Vietnam 13200 C 117 117
175 Vietnam 13201 G 117 117
176 Vietnam 13202 G 117 117
177 Vietnam 13203 A 117 117
178 Vietnam 13204 A 117 117
179 Vietnam 13205 G 117 117
180 Vietnam 13206 C 117 117
181 Vietnam 13207 C 117 117
182 Vietnam 13208 A 117 117
183 Vietnam 13209 A 117 117
184 Vietnam 13210 T 117 117
185 Vietnam 13211 A 117 117
186 Vietnam 13212 T 117 117
187 Vietnam 13213 G 117 117
188 Vietnam 13214 G 117 117
189 Vietnam 13215 A 117 117
190 Vietnam 13216 T 117 117
191 Vietnam 13217 C 117 117
192 Vietnam 13218 A 117 117
193 Vietnam 13219 A 117 117
194 Vietnam 13220 G 117 117
195 Vietnam 13221 A 117 117
196 Vietnam 13222 A 117 117
197 Vietnam 13223 T 117 117
198 Vietnam 13224 C 117 117
199 Vietnam 13225 C 117 117
200 Vietnam 13226 T 117 117
201 Vietnam 13227 T 117 117
202 Vietnam 13228 T 117 117
203 Vietnam 13229 G 117 117
204 Vietnam 13230 G 117 117
205 Vietnam 13231 T 117 117
206 Vietnam 13232 G 117 117
207 Vietnam 13233 G 117 117
208 Vietnam 13234 T 117 117
209 Vietnam 13235 G 117 117
210 Vietnam 13236 C 117 117
211 Vietnam 13237 A 117 117
212 Vietnam 13238 T 117 117
213 Vietnam 13239 C 117 117
214 Vietnam 13240 G 117 117
215 Vietnam 13241 T 117 117
216 Vietnam 13242 G 117 117
217 Vietnam 13243 T 117 117
218 Vietnam 13244 T 117 117
219 Vietnam 13245 G 117 117
220 Vietnam 13246 T 117 117
221 Vietnam 13247 C 117 117
222 Vietnam 13248 T 117 117
223 Vietnam 13249 G 117 117
224 Vietnam 13250 T 117 117
225 Vietnam 13251 A 117 117
226 Vietnam 13252 C 117 117
227 Vietnam 13253 T 117 117
228 Vietnam 13254 G 117 117
229 Vietnam 13255 C 117 117
230 Vietnam 13256 C 117 117
231 Vietnam 13257 G 117 117
232 Vietnam 13258 T 117 117
233 Vietnam 13259 T 117 117
234 Vietnam 13260 G 117 117
235 Vietnam 13261 C 117 117
236 Vietnam 13262 C 117 117
237 Vietnam 13263 A 117 117
238 Vietnam 13264 C 117 117
239 Vietnam 13265 A 117 117
240 Vietnam 13266 T 117 117
241 Vietnam 13267 A 117 117
242 Vietnam 13268 G 117 117
243 Vietnam 13269 A 117 117
244 Vietnam 13270 T 117 117
245 Vietnam 13271 C 117 117
246 Vietnam 13272 A 117 117
247 Vietnam 13273 T 117 117
248 Vietnam 13274 C 117 117
249 Vietnam 13275 C 117 117
250 Vietnam 13276 A 117 117
251 Vietnam 13277 A 117 117
252 Vietnam 13278 A 117 117
253 Vietnam 13279 T 117 117
254 Vietnam 13280 C 117 117
255 Vietnam 13281 C 117 117
256 Vietnam 13282 T 117 117
257 Vietnam 13283 A 117 117
258 Vietnam 13284 A 117 117
259 Vietnam 13285 A 117 117
260 Vietnam 13286 G 117 117
261 Vietnam 13287 G 117 117
262 Vietnam 13288 A 117 117
263 Vietnam 13289 T 117 117
264 Vietnam 13290 T 117 117
265 Vietnam 13291 T 117 117
266 Vietnam 13292 T 117 117
267 Vietnam 13293 G 117 117
268 Vietnam 13294 T 117 117
269 Vietnam 13295 G 117 117
270 Vietnam 13296 A 117 117
271 Vietnam 13297 C 117 117
272 Vietnam 13298 T 117 117
273 Vietnam 13299 T 117 117
274 Vietnam 13300 A 117 117
275 Vietnam 13301 A 117 117
276 Vietnam 13302 A 117 117
277 Vietnam 13303 A 117 117
278 Vietnam 13304 G 117 117
279 Vietnam 13305 G 117 117
280 Vietnam 13306 T 117 117
281 Vietnam 13307 A 117 117
282 Vietnam 13308 A 117 117
283 Vietnam 13309 G 117 117
284 Vietnam 13310 T 117 117
285 Vietnam 13311 A 117 117
286 Vietnam 13312 T 117 117
287 Vietnam 13313 G 117 117
288 Vietnam 13314 T 117 117
289 Vietnam 13315 A 117 117
290 Vietnam 13316 C 117 117
291 Vietnam 13317 A 117 117
292 Vietnam 13318 A 117 117
293 Vietnam 13319 A 117 117
294 Vietnam 13320 T 117 117
295 Vietnam 13321 A 117 117
296 Vietnam 13322 C 117 117
297 Vietnam 13323 C 117 117
298 Vietnam 13324 T 117 117
299 Vietnam 13325 A 117 117
300 Vietnam 13326 C 117 117
301 Vietnam 13327 A 117 117
302 Vietnam 13328 A 117 117
303 Vietnam 13329 C 117 117
304 Vietnam 13330 T 117 117
305 Vietnam 13331 T 117 117
306 Vietnam 13332 G 117 117
307 Vietnam 13333 T 117 117
308 Vietnam 13334 G 117 117
309 Vietnam 13335 C 117 117
310 Vietnam 13336 T 117 117
311 Vietnam 13337 A 117 117
312 Vietnam 13338 A 117 117
313 Vietnam 13339 T 117 117
314 Vietnam 13340 G 117 117
315 Vietnam 13341 A 117 117
316 Vietnam 13342 C 117 117
317 Vietnam 13343 C 117 117
318 Vietnam 13344 C 117 117
319 Vietnam 13345 T 117 117
320 Vietnam 13346 G 117 117
321 Vietnam 13347 T 117 117
322 Vietnam 13348 G 117 117
323 Vietnam 13349 G 117 117
324 Vietnam 13350 G 117 117
325 Vietnam 13351 T 117 117
326 Vietnam 13352 T 117 117
327 Vietnam 13353 T 117 117
328 Vietnam 13354 T 117 117
329 Vietnam 13355 A 117 117
330 Vietnam 13356 C 117 117
331 Vietnam 13357 A 117 117
332 Vietnam 13358 C 117 117
333 Vietnam 13359 T 117 117
334 Vietnam 13360 T 117 117
335 Vietnam 13361 A 117 117
336 Vietnam 13362 A 117 117
337 Vietnam 13363 A 117 117
338 Vietnam 13364 A 117 117
339 Vietnam 13365 A 117 117
340 Vietnam 13366 C 117 117
341 Vietnam 13367 A 117 117
342 Vietnam 13368 C 117 117
343 Vietnam 13369 A 117 117
344 Vietnam 13370 G 117 117
345 Vietnam 13371 T 117 117
346 Vietnam 13372 C 117 117
347 Vietnam 13373 T 117 117
348 Vietnam 13374 G 117 117
349 Vietnam 13375 T 117 117
350 Vietnam 13376 A 117 117
351 Vietnam 13377 C 117 117
352 Vietnam 13378 C 117 117
353 Vietnam 13379 G 117 117
354 Vietnam 13380 T 117 117
355 Vietnam 13381 C 117 117
356 Vietnam 13382 T 117 117
357 Vietnam 13383 G 117 117
358 Vietnam 13384 C 117 117
359 Vietnam 13385 G 117 117
360 Vietnam 13386 G 117 117
361 Vietnam 13387 T 117 117
362 Vietnam 13388 A 117 117
363 Vietnam 13389 T 117 117
364 Vietnam 13390 G 117 117
365 Vietnam 13391 T 117 117
366 Vietnam 13392 G 117 117
367 Vietnam 13393 G 117 117
368 Vietnam 13394 A 117 117
369 Vietnam 13395 A 117 117
370 Vietnam 13396 A 117 117
371 Vietnam 13397 G 117 117
372 Vietnam 13398 G 117 117
373 Vietnam 13399 T 117 117
374 Vietnam 13400 T 117 117
375 Vietnam 13401 A 117 117
376 Vietnam 13402 T 117 117
377 Vietnam 13403 G 117 117
378 Vietnam 13404 G 117 117
379 Vietnam 13405 C 117 117
380 Vietnam 13406 T 117 117
381 Vietnam 13407 G 117 117
382 Vietnam 13408 T 117 117
383 Vietnam 13409 A 117 117
384 Vietnam 13410 G 117 117
385 Vietnam 13411 T 117 117
386 Vietnam 13412 T 117 117
387 Vietnam 13413 G 117 117
388 Vietnam 13414 T 117 117
389 Vietnam 13415 G 117 117
390 Vietnam 13416 A 117 117
391 Vietnam 13417 T 117 117
392 Vietnam 13418 C 117 117
393 Vietnam 13419 A 117 117
394 Vietnam 13420 A 117 117
395 Vietnam 13421 C 117 117
396 Vietnam 13422 T 117 117
397 Vietnam 13423 C 117 117
398 Vietnam 13424 C 117 117
399 Vietnam 13425 G 117 117
400 Vietnam 13426 C 117 117
401 Vietnam 13427 G 117 117
402 Vietnam 13428 A 117 117
403 Vietnam 13429 A 117 117
404 Vietnam 13430 C 117 117
405 Vietnam 13431 C 117 117
406 Vietnam 13432 C 117 117
407 Vietnam 13433 A 117 117
408 Vietnam 13434 T 117 117
409 Vietnam 13435 G 117 117
410 Vietnam 13436 C 117 117
411 Vietnam 13437 T 117 117
412 Vietnam 13438 T 117 117
413 Vietnam 13439 C 117 117
414 Vietnam 13440 A 116 116
415 Vietnam 13441 G 116 116