National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39           1                            
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Uganda 13026 C 131 131
1 Uganda 13027 T 132 132
2 Uganda 13028 G 132 132
3 Uganda 13029 G 132 132
4 Uganda 13030 T 132 131
5 Uganda 13031 A 132 132
6 Uganda 13032 A 132 132
7 Uganda 13033 T 132 132
8 Uganda 13034 G 132 132
9 Uganda 13035 C 132 132
10 Uganda 13036 A 132 132
11 Uganda 13037 A 132 132
12 Uganda 13038 C 132 132
13 Uganda 13039 A 132 132
14 Uganda 13040 G 132 132
15 Uganda 13041 A 132 132
16 Uganda 13042 A 132 132
17 Uganda 13043 G 132 132
18 Uganda 13044 T 132 132
19 Uganda 13045 G 132 132
20 Uganda 13046 C 132 132
21 Uganda 13047 C 132 132
22 Uganda 13048 T 132 132
23 Uganda 13049 G 132 132
24 Uganda 13050 C 132 132
25 Uganda 13051 C 132 132
26 Uganda 13052 A 132 132
27 Uganda 13053 A 132 132
28 Uganda 13054 T 132 132
29 Uganda 13055 T 132 132
30 Uganda 13056 C 132 131
31 Uganda 13057 A 132 132
32 Uganda 13058 A 132 132
33 Uganda 13059 C 132 132
34 Uganda 13060 T 132 132
35 Uganda 13061 G 132 132
36 Uganda 13062 T 132 132
37 Uganda 13063 A 132 132
38 Uganda 13064 T 132 132
39 Uganda 13065 T 132 132
40 Uganda 13066 A 132 132
41 Uganda 13067 T 132 132
42 Uganda 13068 C 132 132
43 Uganda 13069 T 132 132
44 Uganda 13070 T 132 132
45 Uganda 13071 T 132 132
46 Uganda 13072 C 132 132
47 Uganda 13073 T 132 132
48 Uganda 13074 G 132 132
49 Uganda 13075 T 132 132
50 Uganda 13076 G 132 132
51 Uganda 13077 C 132 132
52 Uganda 13078 T 132 132
53 Uganda 13079 T 132 132
54 Uganda 13080 T 132 132
55 Uganda 13081 T 132 131
56 Uganda 13082 G 132 131
57 Uganda 13083 C 132 132
58 Uganda 13084 T 132 132
59 Uganda 13085 G 132 132
60 Uganda 13086 T 132 132
61 Uganda 13087 A 132 132
62 Uganda 13088 G 132 132
63 Uganda 13089 A 132 132
64 Uganda 13090 T 132 132
65 Uganda 13091 G 132 132
66 Uganda 13092 C 132 132
67 Uganda 13093 T 132 132
68 Uganda 13094 G 132 132
69 Uganda 13095 C 132 132
70 Uganda 13096 T 132 132
71 Uganda 13097 A 132 132
72 Uganda 13098 A 132 132
73 Uganda 13099 A 132 132
74 Uganda 13100 G 132 132
75 Uganda 13101 C 132 131
76 Uganda 13102 T 132 132
77 Uganda 13103 T 132 132
78 Uganda 13104 A 132 131
79 Uganda 13105 C 132 131
80 Uganda 13106 A 132 132
81 Uganda 13107 A 132 132
82 Uganda 13108 A 132 132
83 Uganda 13109 G 132 132
84 Uganda 13110 A 132 132
85 Uganda 13111 T 132 132
86 Uganda 13112 T 132 132
87 Uganda 13113 A 132 132
88 Uganda 13114 T 132 132
89 Uganda 13115 C 132 132
90 Uganda 13116 T 132 132
91 Uganda 13117 A 132 132
92 Uganda 13118 G 132 132
93 Uganda 13119 C 132 132
94 Uganda 13120 T 132 132
95 Uganda 13121 A 132 132
96 Uganda 13122 G 132 131
97 Uganda 13123 T 132 132
98 Uganda 13124 G 132 131
99 Uganda 13125 G 132 132
100 Uganda 13126 G T 132 131 Gly4287Gly
101 Uganda 13127 G 132 132
102 Uganda 13128 G 132 132
103 Uganda 13129 A 132 132
104 Uganda 13130 C 132 132
105 Uganda 13131 A 132 132
106 Uganda 13132 A 132 132
107 Uganda 13133 C 132 132
108 Uganda 13134 C 132 132
109 Uganda 13135 A 132 132
110 Uganda 13136 A 132 132
111 Uganda 13137 T 132 132
112 Uganda 13138 C 132 132
113 Uganda 13139 A 132 132
114 Uganda 13140 C 132 132
115 Uganda 13141 T 132 132
116 Uganda 13142 A 132 132
117 Uganda 13143 A 132 131
118 Uganda 13144 T 132 132
119 Uganda 13145 T 132 132
120 Uganda 13146 G 132 132
121 Uganda 13147 T 132 132
122 Uganda 13148 G 132 131
123 Uganda 13149 T 132 132
124 Uganda 13150 T 132 132
125 Uganda 13151 A 132 132
126 Uganda 13152 A 132 132
127 Uganda 13153 G 132 132
128 Uganda 13154 A 132 132
129 Uganda 13155 T 132 132
130 Uganda 13156 G 132 132
131 Uganda 13157 T 132 132
132 Uganda 13158 T 132 132
133 Uganda 13159 G 132 132
134 Uganda 13160 T 132 132
135 Uganda 13161 G 132 132
136 Uganda 13162 T 132 132
137 Uganda 13163 A 132 131
138 Uganda 13164 C 132 131
139 Uganda 13165 A 132 131
140 Uganda 13166 C 132 132
141 Uganda 13167 A 132 132
142 Uganda 13168 C 132 132
143 Uganda 13169 A 132 132
144 Uganda 13170 C 132 132
145 Uganda 13171 T 132 132
146 Uganda 13172 G 132 132
147 Uganda 13173 G 132 132
148 Uganda 13174 T 132 132
149 Uganda 13175 A 132 132
150 Uganda 13176 C 132 132
151 Uganda 13177 T 132 132
152 Uganda 13178 G 132 132
153 Uganda 13179 G 132 132
154 Uganda 13180 T 132 132
155 Uganda 13181 C 132 132
156 Uganda 13182 A 132 132
157 Uganda 13183 G 132 132
158 Uganda 13184 G 132 132
159 Uganda 13185 C 132 132
160 Uganda 13186 A 132 132
161 Uganda 13187 A 132 131
162 Uganda 13188 T 132 132
163 Uganda 13189 A 132 132
164 Uganda 13190 A 132 132
165 Uganda 13191 C 132 132
166 Uganda 13192 A 132 132
167 Uganda 13193 G 132 132
168 Uganda 13194 T 132 132
169 Uganda 13195 T 132 132
170 Uganda 13196 A 132 132
171 Uganda 13197 C 132 132
172 Uganda 13198 A 132 132
173 Uganda 13199 C 132 132
174 Uganda 13200 C 132 132
175 Uganda 13201 G 132 132
176 Uganda 13202 G 132 132
177 Uganda 13203 A 132 132
178 Uganda 13204 A 132 132
179 Uganda 13205 G 132 132
180 Uganda 13206 C 132 132
181 Uganda 13207 C 132 132
182 Uganda 13208 A 132 132
183 Uganda 13209 A 132 132
184 Uganda 13210 T 132 132
185 Uganda 13211 A 132 132
186 Uganda 13212 T 132 132
187 Uganda 13213 G 132 132
188 Uganda 13214 G 132 132
189 Uganda 13215 A 132 132
190 Uganda 13216 T 132 132
191 Uganda 13217 C 132 132
192 Uganda 13218 A 132 131
193 Uganda 13219 A 132 132
194 Uganda 13220 G 132 132
195 Uganda 13221 A 132 132
196 Uganda 13222 A 132 132
197 Uganda 13223 T 132 130
198 Uganda 13224 C 132 131
199 Uganda 13225 C 132 132
200 Uganda 13226 T 132 132
201 Uganda 13227 T 132 132
202 Uganda 13228 T 132 132
203 Uganda 13229 G 132 132
204 Uganda 13230 G 132 132
205 Uganda 13231 T 132 132
206 Uganda 13232 G 132 132
207 Uganda 13233 G 132 132
208 Uganda 13234 T 132 132
209 Uganda 13235 G 132 132
210 Uganda 13236 C 132 132
211 Uganda 13237 A 132 132
212 Uganda 13238 T 132 132
213 Uganda 13239 C 132 132
214 Uganda 13240 G 132 132
215 Uganda 13241 T 132 132
216 Uganda 13242 G 132 132
217 Uganda 13243 T 132 132
218 Uganda 13244 T 132 132
219 Uganda 13245 G 132 132
220 Uganda 13246 T 132 132
221 Uganda 13247 C 132 132
222 Uganda 13248 T 132 132
223 Uganda 13249 G 132 132
224 Uganda 13250 T 132 132
225 Uganda 13251 A 132 132
226 Uganda 13252 C 132 132
227 Uganda 13253 T 132 132
228 Uganda 13254 G 132 132
229 Uganda 13255 C 132 132
230 Uganda 13256 C 132 132
231 Uganda 13257 G 132 132
232 Uganda 13258 T 132 132
233 Uganda 13259 T 132 132
234 Uganda 13260 G 132 132
235 Uganda 13261 C 132 132
236 Uganda 13262 C 132 131
237 Uganda 13263 A 132 131
238 Uganda 13264 C 132 132
239 Uganda 13265 A 132 132
240 Uganda 13266 T 132 132
241 Uganda 13267 A 132 132
242 Uganda 13268 G 132 132
243 Uganda 13269 A 132 132
244 Uganda 13270 T 132 132
245 Uganda 13271 C 132 132
246 Uganda 13272 A 132 132
247 Uganda 13273 T 132 132
248 Uganda 13274 C 132 132
249 Uganda 13275 C 132 132
250 Uganda 13276 A 132 132
251 Uganda 13277 A 132 132
252 Uganda 13278 A 132 132
253 Uganda 13279 T 132 132
254 Uganda 13280 C 132 132
255 Uganda 13281 C 132 132
256 Uganda 13282 T 132 132
257 Uganda 13283 A 132 132
258 Uganda 13284 A 132 132
259 Uganda 13285 A 132 132
260 Uganda 13286 G 132 132
261 Uganda 13287 G 132 132
262 Uganda 13288 A 132 132
263 Uganda 13289 T 132 132
264 Uganda 13290 T 132 132
265 Uganda 13291 T 132 132
266 Uganda 13292 T 132 132
267 Uganda 13293 G 132 132
268 Uganda 13294 T 132 132
269 Uganda 13295 G 132 132
270 Uganda 13296 A 132 132
271 Uganda 13297 C 132 132
272 Uganda 13298 T 132 132
273 Uganda 13299 T 132 132
274 Uganda 13300 A 132 132
275 Uganda 13301 A 132 132
276 Uganda 13302 A 132 132
277 Uganda 13303 A 132 132
278 Uganda 13304 G 132 132
279 Uganda 13305 G 132 132
280 Uganda 13306 T 132 132
281 Uganda 13307 A 132 132
282 Uganda 13308 A 132 132
283 Uganda 13309 G 132 132
284 Uganda 13310 T 132 132
285 Uganda 13311 A 132 131
286 Uganda 13312 T 132 131
287 Uganda 13313 G 132 132
288 Uganda 13314 T 132 131
289 Uganda 13315 A 132 131
290 Uganda 13316 C 132 132
291 Uganda 13317 A 132 132
292 Uganda 13318 A 132 132
293 Uganda 13319 A 132 132
294 Uganda 13320 T 132 132
295 Uganda 13321 A 132 132
296 Uganda 13322 C 132 132
297 Uganda 13323 C 132 132
298 Uganda 13324 T 132 132
299 Uganda 13325 A 132 132
300 Uganda 13326 C 132 132
301 Uganda 13327 A 132 132
302 Uganda 13328 A 132 131
303 Uganda 13329 C 132 132
304 Uganda 13330 T 132 132
305 Uganda 13331 T 132 132
306 Uganda 13332 G 132 132
307 Uganda 13333 T 132 132
308 Uganda 13334 G 132 132
309 Uganda 13335 C 132 132
310 Uganda 13336 T 132 132
311 Uganda 13337 A 132 132
312 Uganda 13338 A 132 131
313 Uganda 13339 T 132 132
314 Uganda 13340 G 132 132
315 Uganda 13341 A 132 132
316 Uganda 13342 C 132 132
317 Uganda 13343 C 132 132
318 Uganda 13344 C 132 132
319 Uganda 13345 T 132 131
320 Uganda 13346 G 132 131
321 Uganda 13347 T 132 131
322 Uganda 13348 G 132 132
323 Uganda 13349 G 132 132
324 Uganda 13350 G 132 132
325 Uganda 13351 T 132 132
326 Uganda 13352 T 132 132
327 Uganda 13353 T 132 132
328 Uganda 13354 T 132 132
329 Uganda 13355 A 132 132
330 Uganda 13356 C 132 132
331 Uganda 13357 A 132 132
332 Uganda 13358 C 132 132
333 Uganda 13359 T 132 132
334 Uganda 13360 T 132 132
335 Uganda 13361 A 132 132
336 Uganda 13362 A 132 132
337 Uganda 13363 A 132 132
338 Uganda 13364 A 132 132
339 Uganda 13365 A 132 132
340 Uganda 13366 C 132 132
341 Uganda 13367 A 132 132
342 Uganda 13368 C 132 132
343 Uganda 13369 A 132 132
344 Uganda 13370 G 132 132
345 Uganda 13371 T 132 132
346 Uganda 13372 C 132 132
347 Uganda 13373 T 132 132
348 Uganda 13374 G 132 132
349 Uganda 13375 T 132 132
350 Uganda 13376 A 132 132
351 Uganda 13377 C 132 132
352 Uganda 13378 C 132 132
353 Uganda 13379 G 132 132
354 Uganda 13380 T 132 132
355 Uganda 13381 C 132 132
356 Uganda 13382 T 132 132
357 Uganda 13383 G 132 132
358 Uganda 13384 C 132 132
359 Uganda 13385 G 132 132
360 Uganda 13386 G 132 132
361 Uganda 13387 T 132 131
362 Uganda 13388 A 132 132
363 Uganda 13389 T 132 132
364 Uganda 13390 G 132 131
365 Uganda 13391 T 132 131
366 Uganda 13392 G 132 132
367 Uganda 13393 G 132 132
368 Uganda 13394 A 132 132
369 Uganda 13395 A 132 132
370 Uganda 13396 A 132 132
371 Uganda 13397 G 132 132
372 Uganda 13398 G 132 132
373 Uganda 13399 T 132 132
374 Uganda 13400 T 132 132
375 Uganda 13401 A 132 132
376 Uganda 13402 T 132 130
377 Uganda 13403 G 132 130
378 Uganda 13404 G 132 131
379 Uganda 13405 C 132 132
380 Uganda 13406 T 132 131
381 Uganda 13407 G 132 132
382 Uganda 13408 T 132 132
383 Uganda 13409 A 132 132
384 Uganda 13410 G 132 132
385 Uganda 13411 T 132 132
386 Uganda 13412 T 132 132
387 Uganda 13413 G 132 132
388 Uganda 13414 T 132 131
389 Uganda 13415 G 132 132
390 Uganda 13416 A 132 132
391 Uganda 13417 T 132 132
392 Uganda 13418 C 132 132
393 Uganda 13419 A 132 132
394 Uganda 13420 A 132 132
395 Uganda 13421 C 132 132
396 Uganda 13422 T 132 132
397 Uganda 13423 C 132 131
398 Uganda 13424 C 132 132
399 Uganda 13425 G 132 132
400 Uganda 13426 C 132 132
401 Uganda 13427 G 132 132
402 Uganda 13428 A 132 132
403 Uganda 13429 A 132 132
404 Uganda 13430 C 132 132
405 Uganda 13431 C 132 132
406 Uganda 13432 C 132 132
407 Uganda 13433 A 132 132
408 Uganda 13434 T 132 132
409 Uganda 13435 G 131 131
410 Uganda 13436 C 131 131
411 Uganda 13437 T 131 131
412 Uganda 13438 T 131 131
413 Uganda 13439 C 131 131
414 Uganda 13440 A 131 131
415 Uganda 13441 G 131 131