National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                   1    
C   39                               1        
D   21     1                                  
E   12                                        
F   15                                        
G   39                               1        
H   9                                        
I   12                                        
K   24                                        
L   24                   1                    
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39 1             3                        
V   27               1                   1    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Turkey 13026 C 487 487
1 Turkey 13027 T 487 487
2 Turkey 13028 G 487 487
3 Turkey 13029 G 487 487
4 Turkey 13030 T 487 487
5 Turkey 13031 A 487 487
6 Turkey 13032 A 487 487
7 Turkey 13033 T 487 487
8 Turkey 13034 G 487 487
9 Turkey 13035 C 487 487
10 Turkey 13036 A 487 487
11 Turkey 13037 A 487 487
12 Turkey 13038 C 487 487
13 Turkey 13039 A 487 487
14 Turkey 13040 G 487 487
15 Turkey 13041 A 487 487
16 Turkey 13042 A 487 487
17 Turkey 13043 G 487 487
18 Turkey 13044 T 487 487
19 Turkey 13045 G T 489 488 Val4260Val
20 Turkey 13046 C 489 489
21 Turkey 13047 C 489 489
22 Turkey 13048 T 489 489
23 Turkey 13049 G 489 489
24 Turkey 13050 C 489 489
25 Turkey 13051 C 489 489
26 Turkey 13052 A 489 489
27 Turkey 13053 A 489 489
28 Turkey 13054 T 489 489
29 Turkey 13055 T 489 489
30 Turkey 13056 C 489 489
31 Turkey 13057 A 489 489
32 Turkey 13058 A 489 489
33 Turkey 13059 C 489 489
34 Turkey 13060 T 489 489
35 Turkey 13061 G 489 489
36 Turkey 13062 T 489 489
37 Turkey 13063 A 489 489
38 Turkey 13064 T 489 489
39 Turkey 13065 T 489 489
40 Turkey 13066 A 489 489
41 Turkey 13067 T 489 489
42 Turkey 13068 C 489 489
43 Turkey 13069 T 489 489
44 Turkey 13070 T 489 488
45 Turkey 13071 T 489 488
46 Turkey 13072 C 489 489
47 Turkey 13073 T 489 489
48 Turkey 13074 G 489 489
49 Turkey 13075 T 489 489
50 Turkey 13076 G 489 489
51 Turkey 13077 C 489 489
52 Turkey 13078 T 489 489
53 Turkey 13079 T 489 489
54 Turkey 13080 T 489 489
55 Turkey 13081 T 489 489
56 Turkey 13082 G 489 489
57 Turkey 13083 C 489 489
58 Turkey 13084 T 489 489
59 Turkey 13085 G 489 489
60 Turkey 13086 T 489 489
61 Turkey 13087 A 489 489
62 Turkey 13088 G 489 489
63 Turkey 13089 A 489 489
64 Turkey 13090 T 489 489
65 Turkey 13091 G 489 489
66 Turkey 13092 C 489 489
67 Turkey 13093 T 489 489
68 Turkey 13094 G 489 489
69 Turkey 13095 C 489 489
70 Turkey 13096 T 489 489
71 Turkey 13097 A 489 489
72 Turkey 13098 A 489 489
73 Turkey 13099 A 489 489
74 Turkey 13100 G 489 489
75 Turkey 13101 C 489 489
76 Turkey 13102 T 489 489
77 Turkey 13103 T 489 489
78 Turkey 13104 A 489 489
79 Turkey 13105 C 489 489
80 Turkey 13106 A 489 489
81 Turkey 13107 A 489 489
82 Turkey 13108 A 489 489
83 Turkey 13109 G 489 489
84 Turkey 13110 A 489 489
85 Turkey 13111 T 489 489
86 Turkey 13112 T 489 489
87 Turkey 13113 A 489 489
88 Turkey 13114 T 489 489
89 Turkey 13115 C 489 489
90 Turkey 13116 T 489 489
91 Turkey 13117 A 489 489
92 Turkey 13118 G 489 489
93 Turkey 13119 C T 489 488 Ala4285Val
94 Turkey 13120 T 489 489
95 Turkey 13121 A 489 488
96 Turkey 13122 G 489 488
97 Turkey 13123 T 489 488
98 Turkey 13124 G 489 488
99 Turkey 13125 G 489 488
100 Turkey 13126 G 489 488
101 Turkey 13127 G 489 488
102 Turkey 13128 G 489 487
103 Turkey 13129 A 489 488
104 Turkey 13130 C 489 488
105 Turkey 13131 A 489 488
106 Turkey 13132 A 489 488
107 Turkey 13133 C 489 488
108 Turkey 13134 C 489 488
109 Turkey 13135 A 489 488
110 Turkey 13136 A 489 488
111 Turkey 13137 T 489 488
112 Turkey 13138 C 489 488
113 Turkey 13139 A 489 488
114 Turkey 13140 C 489 488
115 Turkey 13141 T 489 488
116 Turkey 13142 A 489 488
117 Turkey 13143 A 489 488
118 Turkey 13144 T 489 488
119 Turkey 13145 T 489 488
120 Turkey 13146 G 489 489
121 Turkey 13147 T 489 489
122 Turkey 13148 G 489 489
123 Turkey 13149 T 489 489
124 Turkey 13150 T 489 489
125 Turkey 13151 A 489 489
126 Turkey 13152 A 489 489
127 Turkey 13153 G 489 489
128 Turkey 13154 A 489 489
129 Turkey 13155 T 489 489
130 Turkey 13156 G 489 489
131 Turkey 13157 T 488 488
132 Turkey 13158 T 488 488
133 Turkey 13159 G 488 488
134 Turkey 13160 T 488 488
135 Turkey 13161 G 488 488
136 Turkey 13162 T 488 488
137 Turkey 13163 A 488 488
138 Turkey 13164 C 488 488
139 Turkey 13165 A 488 488
140 Turkey 13166 C 488 488
141 Turkey 13167 A 488 488
142 Turkey 13168 C 488 488
143 Turkey 13169 A 488 488
144 Turkey 13170 C 488 488
145 Turkey 13171 T 488 488
146 Turkey 13172 G 488 488
147 Turkey 13173 G 488 488
148 Turkey 13174 T 488 488
149 Turkey 13175 A 488 488
150 Turkey 13176 C 488 488
151 Turkey 13177 T 488 488
152 Turkey 13178 G 488 488
153 Turkey 13179 G 488 488
154 Turkey 13180 T 488 488
155 Turkey 13181 C 488 488
156 Turkey 13182 A 488 488
157 Turkey 13183 G 488 488
158 Turkey 13184 G 488 488
159 Turkey 13185 C 488 488
160 Turkey 13186 A 488 488
161 Turkey 13187 A 488 488
162 Turkey 13188 T 488 488
163 Turkey 13189 A 488 488
164 Turkey 13190 A 488 488
165 Turkey 13191 C 488 488
166 Turkey 13192 A 488 488
167 Turkey 13193 G 488 488
168 Turkey 13194 T 488 488
169 Turkey 13195 T 488 488
170 Turkey 13196 A 488 488
171 Turkey 13197 C 488 488
172 Turkey 13198 A 488 488
173 Turkey 13199 C 488 488
174 Turkey 13200 C 488 488
175 Turkey 13201 G 488 488
176 Turkey 13202 G 488 488
177 Turkey 13203 A 488 488
178 Turkey 13204 A 488 488
179 Turkey 13205 G 488 488
180 Turkey 13206 C 488 488
181 Turkey 13207 C 488 488
182 Turkey 13208 A 488 488
183 Turkey 13209 A 488 488
184 Turkey 13210 T 488 488
185 Turkey 13211 A 488 488
186 Turkey 13212 T 488 488
187 Turkey 13213 G 488 488
188 Turkey 13214 G 488 488
189 Turkey 13215 A 488 488
190 Turkey 13216 T 488 488
191 Turkey 13217 C 488 488
192 Turkey 13218 A 488 488
193 Turkey 13219 A 488 488
194 Turkey 13220 G 488 488
195 Turkey 13221 A 488 488
196 Turkey 13222 A 488 488
197 Turkey 13223 T 488 488
198 Turkey 13224 C 488 488
199 Turkey 13225 C 488 488
200 Turkey 13226 T 488 488
201 Turkey 13227 T 488 488
202 Turkey 13228 T 488 488
203 Turkey 13229 G 489 489
204 Turkey 13230 G 489 489
205 Turkey 13231 T 489 489
206 Turkey 13232 G 489 489
207 Turkey 13233 G 489 489
208 Turkey 13234 T 489 489
209 Turkey 13235 G 489 489
210 Turkey 13236 C 489 489
211 Turkey 13237 A 489 489
212 Turkey 13238 T 489 489
213 Turkey 13239 C 489 489
214 Turkey 13240 G 489 489
215 Turkey 13241 T 489 489
216 Turkey 13242 G 489 489
217 Turkey 13243 T 489 489
218 Turkey 13244 T 489 489
219 Turkey 13245 G 489 489
220 Turkey 13246 T 489 489
221 Turkey 13247 C T 489 488 Leu4328Leu
222 Turkey 13248 T 489 489
223 Turkey 13249 G 489 489
224 Turkey 13250 T 489 489
225 Turkey 13251 A 489 489
226 Turkey 13252 C 489 489
227 Turkey 13253 T 489 489
228 Turkey 13254 G 489 489
229 Turkey 13255 C 489 489
230 Turkey 13256 C 489 489
231 Turkey 13257 G 489 489
232 Turkey 13258 T 489 489
233 Turkey 13259 T A 489 488 Cys4332Ser
234 Turkey 13260 G 489 489
235 Turkey 13261 C 489 489
236 Turkey 13262 C 489 489
237 Turkey 13263 A 489 489
238 Turkey 13264 C 489 489
239 Turkey 13265 A 489 489
240 Turkey 13266 T 489 489
241 Turkey 13267 A 489 489
242 Turkey 13268 G 489 489
243 Turkey 13269 A 489 489
244 Turkey 13270 T 489 489
245 Turkey 13271 C 489 489
246 Turkey 13272 A 489 489
247 Turkey 13273 T 489 489
248 Turkey 13274 C 489 489
249 Turkey 13275 C 489 489
250 Turkey 13276 A 489 489
251 Turkey 13277 A 489 489
252 Turkey 13278 A 489 489
253 Turkey 13279 T 489 489
254 Turkey 13280 C 489 489
255 Turkey 13281 C 489 489
256 Turkey 13282 T 489 489
257 Turkey 13283 A 489 489
258 Turkey 13284 A 489 489
259 Turkey 13285 A 489 489
260 Turkey 13286 G 489 489
261 Turkey 13287 G 489 489
262 Turkey 13288 A 489 489
263 Turkey 13289 T 489 489
264 Turkey 13290 T 489 489
265 Turkey 13291 T 489 489
266 Turkey 13292 T 489 489
267 Turkey 13293 G 489 489
268 Turkey 13294 T 489 489
269 Turkey 13295 G 489 489
270 Turkey 13296 A 489 489
271 Turkey 13297 C T 489 487 Asp4344Asp
272 Turkey 13298 T 489 489
273 Turkey 13299 T 489 489
274 Turkey 13300 A 489 489
275 Turkey 13301 A 489 489
276 Turkey 13302 A 489 489
277 Turkey 13303 A 489 489
278 Turkey 13304 G 489 489
279 Turkey 13305 G 489 489
280 Turkey 13306 T 489 489
281 Turkey 13307 A 489 489
282 Turkey 13308 A 489 489
283 Turkey 13309 G 489 489
284 Turkey 13310 T 489 489
285 Turkey 13311 A 489 489
286 Turkey 13312 T 489 489
287 Turkey 13313 G 489 489
288 Turkey 13314 T 489 489
289 Turkey 13315 A 489 489
290 Turkey 13316 C 489 489
291 Turkey 13317 A 489 489
292 Turkey 13318 A 489 489
293 Turkey 13319 A 489 489
294 Turkey 13320 T 489 489
295 Turkey 13321 A 489 489
296 Turkey 13322 C 489 489
297 Turkey 13323 C 489 489
298 Turkey 13324 T 489 489
299 Turkey 13325 A 489 488
300 Turkey 13326 C T 489 486 Thr4354Ile
301 Turkey 13327 A 489 487
302 Turkey 13328 A 489 487
303 Turkey 13329 C T 489 486 Thr4355Ile
304 Turkey 13330 T 489 487
305 Turkey 13331 T 489 487
306 Turkey 13332 G 489 487
307 Turkey 13333 T 489 487
308 Turkey 13334 G 489 487
309 Turkey 13335 C 489 487
310 Turkey 13336 T 489 487
311 Turkey 13337 A 489 487
312 Turkey 13338 A 489 487
313 Turkey 13339 T 489 487
314 Turkey 13340 G 489 488
315 Turkey 13341 A 489 488
316 Turkey 13342 C 489 488
317 Turkey 13343 C 489 488
318 Turkey 13344 C 489 488
319 Turkey 13345 T 489 488
320 Turkey 13346 G 489 488
321 Turkey 13347 T 489 488
322 Turkey 13348 G 489 487
323 Turkey 13349 G 489 487
324 Turkey 13350 G 489 487
325 Turkey 13351 T 489 487
326 Turkey 13352 T 489 488
327 Turkey 13353 T 489 488
328 Turkey 13354 T 489 488
329 Turkey 13355 A 489 488
330 Turkey 13356 C T 489 487 Thr4364Ile
331 Turkey 13357 A 489 488
332 Turkey 13358 C 489 488
333 Turkey 13359 T 489 488
334 Turkey 13360 T 489 488
335 Turkey 13361 A 489 488
336 Turkey 13362 A 489 488
337 Turkey 13363 A 489 488
338 Turkey 13364 A 489 488
339 Turkey 13365 A 489 488
340 Turkey 13366 C 489 488
341 Turkey 13367 A 489 488
342 Turkey 13368 C 489 488
343 Turkey 13369 A 489 488
344 Turkey 13370 G A 489 487 Val4369Ile
345 Turkey 13371 T 489 488
346 Turkey 13372 C 489 488
347 Turkey 13373 T 489 488
348 Turkey 13374 G 489 488
349 Turkey 13375 T 489 488
350 Turkey 13376 A G 489 487 Thr4371Ala
351 Turkey 13377 C 489 488
352 Turkey 13378 C 489 488
353 Turkey 13379 G 489 489
354 Turkey 13380 T 488 488
355 Turkey 13381 C 488 488
356 Turkey 13382 T 488 488
357 Turkey 13383 G 488 488
358 Turkey 13384 C 488 488
359 Turkey 13385 G 488 488
360 Turkey 13386 G 488 488
361 Turkey 13387 T 488 488
362 Turkey 13388 A 488 488
363 Turkey 13389 T 488 488
364 Turkey 13390 G 488 488
365 Turkey 13391 T 488 488
366 Turkey 13392 G 488 488
367 Turkey 13393 G 488 488
368 Turkey 13394 A 488 488
369 Turkey 13395 A 488 488
370 Turkey 13396 A 488 488
371 Turkey 13397 G 488 488
372 Turkey 13398 G 488 488
373 Turkey 13399 T 488 488
374 Turkey 13400 T 488 488
375 Turkey 13401 A 488 488
376 Turkey 13402 T 488 488
377 Turkey 13403 G A 488 487 Gly4380Ser
378 Turkey 13404 G 488 488
379 Turkey 13405 C 488 488
380 Turkey 13406 T 488 488
381 Turkey 13407 G 488 488
382 Turkey 13408 T 488 488
383 Turkey 13409 A 488 488
384 Turkey 13410 G 488 488
385 Turkey 13411 T 488 488
386 Turkey 13412 T 488 488
387 Turkey 13413 G 488 488
388 Turkey 13414 T 488 488
389 Turkey 13415 G 488 488
390 Turkey 13416 A 488 488
391 Turkey 13417 T 488 488
392 Turkey 13418 C 488 488
393 Turkey 13419 A 488 488
394 Turkey 13420 A 488 488
395 Turkey 13421 C 488 488
396 Turkey 13422 T 488 488
397 Turkey 13423 C 488 488
398 Turkey 13424 C 488 488
399 Turkey 13425 G 488 488
400 Turkey 13426 C 488 488
401 Turkey 13427 G 488 488
402 Turkey 13428 A 488 488
403 Turkey 13429 A 488 488
404 Turkey 13430 C 488 488
405 Turkey 13431 C 488 488
406 Turkey 13432 C 488 488
407 Turkey 13433 A 488 488
408 Turkey 13434 T 488 488
409 Turkey 13435 G 488 488
410 Turkey 13436 C 488 488
411 Turkey 13437 T 488 488
412 Turkey 13438 T 488 488
413 Turkey 13439 C 488 488
414 Turkey 13440 A 488 488
415 Turkey 13441 G 488 488