National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 2                                 2    
C   39   2                                    
D   21 1   3                                  
E   12                                        
F   15         1                              
G   39           1                            
H   9             1                          
I   12               1   1 1             1    
K   24                 1                      
L   24         2     1   3                    
M   12                                   1    
N   21                 1             1 1      
P   24                   1     3     4        
Q   18                                        
R   6   1         1               1 1        
S   18                               3        
T   39 1             5                 2      
V   27 1                 1               3    
W   3                                        
Y   15                                       2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Switzerland 13026 C 8056 8056
1 Switzerland 13027 T 8057 8057
2 Switzerland 13028 G 8057 8057
3 Switzerland 13029 G 8057 8057
4 Switzerland 13030 T 8057 8057
5 Switzerland 13031 A 8057 8056
6 Switzerland 13032 A G 8057 8056 Asn4256Ser
7 Switzerland 13033 T A 8057 8056 Asn4256Lys
8 Switzerland 13034 G 8057 8055
9 Switzerland 13035 C 8057 8057
10 Switzerland 13036 A 8057 8057
11 Switzerland 13037 A 8057 8057
12 Switzerland 13038 C 8057 8055
13 Switzerland 13039 A G 8057 8053 Thr4258Thr
14 Switzerland 13040 G 8057 8055
15 Switzerland 13041 A 8057 8056
16 Switzerland 13042 A 8057 8056
17 Switzerland 13043 G T 8057 8056 Val4260Leu
18 Switzerland 13044 T 8057 8057
19 Switzerland 13045 G A 8057 8054 Val4260Val
20 Switzerland 13046 C T 8057 8056 Pro4261Ser
21 Switzerland 13047 C T 8057 8056 Pro4261Leu
22 Switzerland 13048 T 8057 8057
23 Switzerland 13049 G 8057 8056
24 Switzerland 13050 C 8057 8056
25 Switzerland 13051 C T 8057 8054 Ala4262Ala
26 Switzerland 13052 A 8057 8056
27 Switzerland 13053 A 8057 8056
28 Switzerland 13054 T 8057 8057
29 Switzerland 13055 T 8057 8056
30 Switzerland 13056 C 8057 8056
31 Switzerland 13057 A 8057 8056
32 Switzerland 13058 A 8057 8057
33 Switzerland 13059 C 8057 8057
34 Switzerland 13060 T 8057 8057
35 Switzerland 13061 G 8057 8056
36 Switzerland 13062 T 8057 8056
37 Switzerland 13063 A 8057 8057
38 Switzerland 13064 T 8057 8057
39 Switzerland 13065 T 8057 8056
40 Switzerland 13066 A 8057 8057
41 Switzerland 13067 T 8057 8057
42 Switzerland 13068 C 8057 8052
43 Switzerland 13069 T C 8057 8052 Ser4268Ser
44 Switzerland 13070 T 8057 8057
45 Switzerland 13071 T 8057 8057
46 Switzerland 13072 C T 8057 8055 Phe4269Phe
47 Switzerland 13073 T 8057 8057
48 Switzerland 13074 G 8057 8055
49 Switzerland 13075 T 8057 8057
50 Switzerland 13076 G 8057 8057
51 Switzerland 13077 C 8057 8054
52 Switzerland 13078 T 8057 8054
53 Switzerland 13079 T 8057 8057
54 Switzerland 13080 T 8057 8057
55 Switzerland 13081 T 8057 8056
56 Switzerland 13082 G 8057 8057
57 Switzerland 13083 C 8057 8057
58 Switzerland 13084 T 8057 8056
59 Switzerland 13085 G 8057 8057
60 Switzerland 13086 T 8057 8057
61 Switzerland 13087 A 8057 8056
62 Switzerland 13088 G 8057 8057
63 Switzerland 13089 A 8054 8054
64 Switzerland 13090 T 8053 8053
65 Switzerland 13091 G 8050 8046
66 Switzerland 13092 C 8050 8046
67 Switzerland 13093 T 8050 8046
68 Switzerland 13094 G 8050 8046
69 Switzerland 13095 C 8050 8045
70 Switzerland 13096 T 8050 8045
71 Switzerland 13097 A 8047 8039
72 Switzerland 13098 A 8047 8043
73 Switzerland 13099 A 8047 8043
74 Switzerland 13100 G 8047 8040
75 Switzerland 13101 C 8047 8042
76 Switzerland 13102 T 8047 8042
77 Switzerland 13103 T 8047 8041
78 Switzerland 13104 A 8047 8042
79 Switzerland 13105 C T 8047 8038 Tyr4280Tyr
80 Switzerland 13106 A 8047 8042
81 Switzerland 13107 A 8047 8043
82 Switzerland 13108 A 8047 8043
83 Switzerland 13109 G 8047 8041
84 Switzerland 13110 A C 8047 8042 Asp4282Ala
85 Switzerland 13111 T 8047 8043
86 Switzerland 13112 T 8047 8043
87 Switzerland 13113 A 8047 8043
88 Switzerland 13114 T C 8047 8040 Tyr4283Tyr
89 Switzerland 13115 C T 8047 8019 Leu4284Leu
90 Switzerland 13116 T 8047 8042
91 Switzerland 13117 A 8047 8043
92 Switzerland 13118 G 8047 8042
93 Switzerland 13119 C T 8047 8037 Ala4285Val
94 Switzerland 13120 T 8047 8043
95 Switzerland 13121 A 8047 8042
96 Switzerland 13122 G 8047 8043
97 Switzerland 13123 T 8047 8043
98 Switzerland 13124 G 8047 8043
99 Switzerland 13125 G 8047 8042
100 Switzerland 13126 G 8047 8044
101 Switzerland 13127 G 8047 8044
102 Switzerland 13128 G 8047 8044
103 Switzerland 13129 A 8047 8044
104 Switzerland 13130 C 8047 8042
105 Switzerland 13131 A 8047 8044
106 Switzerland 13132 A 8047 8045
107 Switzerland 13133 C T 8047 8044 Pro4290Ser
108 Switzerland 13134 C 8047 8044
109 Switzerland 13135 A 8047 8046
110 Switzerland 13136 A 8047 8046
111 Switzerland 13137 T 8047 8046
112 Switzerland 13138 C T,G 8047 8041 Ile4291Met-p.Ile4291Ile
113 Switzerland 13139 A 8047 8046
114 Switzerland 13140 C 8047 8044
115 Switzerland 13141 T 8047 8046
116 Switzerland 13142 A 8047 8046
117 Switzerland 13143 A 8047 8046
118 Switzerland 13144 T 8047 8046
119 Switzerland 13145 T 8047 8047
120 Switzerland 13146 G 8047 8047
121 Switzerland 13147 T 8047 8046
122 Switzerland 13148 G 8047 8047
123 Switzerland 13149 T 8047 8047
124 Switzerland 13150 T 8047 8047
125 Switzerland 13151 A 8047 8047
126 Switzerland 13152 A 8047 8047
127 Switzerland 13153 G A 8047 8043 Lys4296Lys
128 Switzerland 13154 A 8047 8046
129 Switzerland 13155 T 8047 8047
130 Switzerland 13156 G 8047 8047
131 Switzerland 13157 T 8047 8045
132 Switzerland 13158 T 8047 8046
133 Switzerland 13159 G 8047 8046
134 Switzerland 13160 T 8047 8047
135 Switzerland 13161 G 8047 8046
136 Switzerland 13162 T 8047 8046
137 Switzerland 13163 A 8047 8046
138 Switzerland 13164 C T 8047 8045 Thr4300Ile
139 Switzerland 13165 A 8047 8046
140 Switzerland 13166 C 8047 8047
141 Switzerland 13167 A 8047 8046
142 Switzerland 13168 C 8047 8046
143 Switzerland 13169 A 8047 8047
144 Switzerland 13170 C 8047 8047
145 Switzerland 13171 T 8047 8045
146 Switzerland 13172 G 8047 8046
147 Switzerland 13173 G 8047 8045
148 Switzerland 13174 T 8047 8046
149 Switzerland 13175 A 8047 8047
150 Switzerland 13176 C T 8047 8041 Thr4304Ile
151 Switzerland 13177 T 8047 8047
152 Switzerland 13178 G 8047 8046
153 Switzerland 13179 G 8047 8046
154 Switzerland 13180 T C 8047 8046 Gly4305Gly
155 Switzerland 13181 C 8047 8046
156 Switzerland 13182 A 8047 8047
157 Switzerland 13183 G 8047 8044
158 Switzerland 13184 G 8047 8045
159 Switzerland 13185 C 8047 8047
160 Switzerland 13186 A T 8047 8045 Ala4307Ala
161 Switzerland 13187 A C 8047 8045 Ile4308Leu
162 Switzerland 13188 T 8047 8047
163 Switzerland 13189 A 8047 8047
164 Switzerland 13190 A 8047 8046
165 Switzerland 13191 C 8047 8047
166 Switzerland 13192 A 8047 8046
167 Switzerland 13193 G 8047 8047
168 Switzerland 13194 T C 8047 8043 Val4310Ala
169 Switzerland 13195 T 8047 8047
170 Switzerland 13196 A G 8047 8046 Thr4311Ala
171 Switzerland 13197 C T 8047 8044 Thr4311Ile
172 Switzerland 13198 A 8047 8047
173 Switzerland 13199 C 8047 8045
174 Switzerland 13200 C 8047 8046
175 Switzerland 13201 G T,A 8047 8043 Pro4312Pro-p.Pro4312Pro
176 Switzerland 13202 G 8047 8046
177 Switzerland 13203 A 8047 8045
178 Switzerland 13204 A 8047 8047
179 Switzerland 13205 G 8047 8047
180 Switzerland 13206 C 8047 8046
181 Switzerland 13207 C 8047 8044
182 Switzerland 13208 A 8047 8046
183 Switzerland 13209 A C 8047 8046 Asn4315Thr
184 Switzerland 13210 T 8047 8047
185 Switzerland 13211 A 8047 8047
186 Switzerland 13212 T 8047 8047
187 Switzerland 13213 G 8047 8046
188 Switzerland 13214 G 8047 8046
189 Switzerland 13215 A 8047 8047
190 Switzerland 13216 T C 8047 8046 Asp4317Asp
191 Switzerland 13217 C 8047 8045
192 Switzerland 13218 A 8047 8047
193 Switzerland 13219 A 8047 8046
194 Switzerland 13220 G 8047 8045
195 Switzerland 13221 A 8047 8047
196 Switzerland 13222 A 8047 8046
197 Switzerland 13223 T 8047 8045
198 Switzerland 13224 C 8047 8046
199 Switzerland 13225 C T 8047 8032 Ser4320Ser
200 Switzerland 13226 T 8047 8045
201 Switzerland 13227 T 8047 8046
202 Switzerland 13228 T 8047 8046
203 Switzerland 13229 G 8047 8046
204 Switzerland 13230 G 8047 8047
205 Switzerland 13231 T 8047 8047
206 Switzerland 13232 G 8047 8046
207 Switzerland 13233 G 8047 8047
208 Switzerland 13234 T 8047 8047
209 Switzerland 13235 G 8047 8046
210 Switzerland 13236 C 8047 8047
211 Switzerland 13237 A 8047 8047
212 Switzerland 13238 T 8047 8047
213 Switzerland 13239 C 8047 8047
214 Switzerland 13240 G T 8047 8046 Ser4325Ser
215 Switzerland 13241 T 8047 8047
216 Switzerland 13242 G 8047 8046
217 Switzerland 13243 T 8047 8046
218 Switzerland 13244 T 8047 8047
219 Switzerland 13245 G 8047 8047
220 Switzerland 13246 T 8047 8047
221 Switzerland 13247 C T 8047 8044 Leu4328Leu
222 Switzerland 13248 T 8047 8047
223 Switzerland 13249 G T 8047 8043 Leu4328Leu
224 Switzerland 13250 T 8047 8046
225 Switzerland 13251 A 8047 8047
226 Switzerland 13252 C 8047 8044
227 Switzerland 13253 T 8047 8046
228 Switzerland 13254 G 8047 8047
229 Switzerland 13255 C T 8047 8040 Cys4330Cys
230 Switzerland 13256 C 8047 8046
231 Switzerland 13257 G 8047 8046
232 Switzerland 13258 T 8047 8045
233 Switzerland 13259 T 8047 8045
234 Switzerland 13260 G 8047 8042
235 Switzerland 13261 C T 8047 8041 Cys4332Cys
236 Switzerland 13262 C 8047 8044
237 Switzerland 13263 A 8047 8045
238 Switzerland 13264 C T 8047 8031 His4333His
239 Switzerland 13265 A G 8047 8043 Ile4334Val
240 Switzerland 13266 T 8047 8044
241 Switzerland 13267 A 8047 8045
242 Switzerland 13268 G 8047 8043
243 Switzerland 13269 A 8047 8045
244 Switzerland 13270 T C 8047 8043 Asp4335Asp
245 Switzerland 13271 C 8047 8044
246 Switzerland 13272 A 8047 8045
247 Switzerland 13273 T 8047 8044
248 Switzerland 13274 C T 8047 8038 Pro4337Ser
249 Switzerland 13275 C 8047 8044
250 Switzerland 13276 A 8047 8045
251 Switzerland 13277 A 8046 8044
252 Switzerland 13278 A 8046 8043
253 Switzerland 13279 T 8046 8044
254 Switzerland 13280 C 8046 8042
255 Switzerland 13281 C 8046 8043
256 Switzerland 13282 T 8046 8043
257 Switzerland 13283 A 8046 8042
258 Switzerland 13284 A 8046 8044
259 Switzerland 13285 A 8046 8044
260 Switzerland 13286 G 8046 8043
261 Switzerland 13287 G 8046 8043
262 Switzerland 13288 A 8046 8042
263 Switzerland 13289 T 8046 8044
264 Switzerland 13290 T 8046 8043
265 Switzerland 13291 T 8046 8044
266 Switzerland 13292 T 8046 8043
267 Switzerland 13293 G 8046 8044
268 Switzerland 13294 T 8046 8044
269 Switzerland 13295 G 8046 8044
270 Switzerland 13296 A 8046 8043
271 Switzerland 13297 C T 8046 8034 Asp4344Asp
272 Switzerland 13298 T 8046 8044
273 Switzerland 13299 T 8046 8042
274 Switzerland 13300 A 8046 8042
275 Switzerland 13301 A 8046 8042
276 Switzerland 13302 A 8046 8044
277 Switzerland 13303 A 8046 8043
278 Switzerland 13304 G 8046 8042
279 Switzerland 13305 G 8047 8045
280 Switzerland 13306 T 8048 8046
281 Switzerland 13307 A 8049 8047
282 Switzerland 13308 A 8055 8054
283 Switzerland 13309 G 8055 8055
284 Switzerland 13310 T 8056 8055
285 Switzerland 13311 A 8056 8055
286 Switzerland 13312 T 8056 8054
287 Switzerland 13313 G 8057 8055
288 Switzerland 13314 T 8057 8055
289 Switzerland 13315 A 8057 8055
290 Switzerland 13316 C 8057 8051
291 Switzerland 13317 A 8057 8055
292 Switzerland 13318 A 8057 8055
293 Switzerland 13319 A 8057 8055
294 Switzerland 13320 T 8063 8059
295 Switzerland 13321 A 8063 8060
296 Switzerland 13322 C 8063 8057
297 Switzerland 13323 C 8063 8053
298 Switzerland 13324 T 8065 8056
299 Switzerland 13325 A 8065 8062
300 Switzerland 13326 C T 8065 8059 Thr4354Ile
301 Switzerland 13327 A 8065 8063
302 Switzerland 13328 A 8065 8063
303 Switzerland 13329 C 8065 8056
304 Switzerland 13330 T 8065 8060
305 Switzerland 13331 T 8065 8062
306 Switzerland 13332 G 8065 8061
307 Switzerland 13333 T 8065 8060
308 Switzerland 13334 G 8065 8062
309 Switzerland 13335 C T 8065 8055 Ala4357Val
310 Switzerland 13336 T 8065 8062
311 Switzerland 13337 A 8065 8062
312 Switzerland 13338 A 8065 8064
313 Switzerland 13339 T 8065 8064
314 Switzerland 13340 G 8065 8064
315 Switzerland 13341 A 8065 8063
316 Switzerland 13342 C 8065 8064
317 Switzerland 13343 C 8065 8064
318 Switzerland 13344 C 8065 8064
319 Switzerland 13345 T 8065 8063
320 Switzerland 13346 G 8065 8064
321 Switzerland 13347 T 8065 8063
322 Switzerland 13348 G T 8065 8061 Val4361Val
323 Switzerland 13349 G 8065 8065
324 Switzerland 13350 G 8065 8064
325 Switzerland 13351 T 8065 8064
326 Switzerland 13352 T 8065 8065
327 Switzerland 13353 T 8065 8065
328 Switzerland 13354 T 8065 8063
329 Switzerland 13355 A 8065 8064
330 Switzerland 13356 C T 8065 8053 Thr4364Ile
331 Switzerland 13357 A 8065 8064
332 Switzerland 13358 C 8065 8064
333 Switzerland 13359 T 8065 8065
334 Switzerland 13360 T 8065 8065
335 Switzerland 13361 A 8065 8065
336 Switzerland 13362 A 8065 8065
337 Switzerland 13363 A 8065 8063
338 Switzerland 13364 A 8065 8065
339 Switzerland 13365 A 8065 8064
340 Switzerland 13366 C 8065 8064
341 Switzerland 13367 A 8065 8064
342 Switzerland 13368 C 8065 8065
343 Switzerland 13369 A 8066 8065
344 Switzerland 13370 G 8066 8066
345 Switzerland 13371 T 8066 8066
346 Switzerland 13372 C T 8066 8029 Val4369Val
347 Switzerland 13373 T 8066 8066
348 Switzerland 13374 G 8066 8066
349 Switzerland 13375 T 8066 8065
350 Switzerland 13376 A 8066 8066
351 Switzerland 13377 C 8066 8066
352 Switzerland 13378 C T 8066 8064 Thr4371Thr
353 Switzerland 13379 G 8064 8063
354 Switzerland 13380 T 8042 8039
355 Switzerland 13381 C 8031 8018
356 Switzerland 13382 T 8022 8015
357 Switzerland 13383 G 8018 8011
358 Switzerland 13384 C 8015 8007
359 Switzerland 13385 G 8014 8007
360 Switzerland 13386 G 8006 7996
361 Switzerland 13387 T 8000 7992
362 Switzerland 13388 A G 7999 7990 Met4375Val
363 Switzerland 13389 T 7999 7991
364 Switzerland 13390 G 7998 7992
365 Switzerland 13391 T 7998 7993
366 Switzerland 13392 G 7996 7989
367 Switzerland 13393 G 7996 7987
368 Switzerland 13394 A 7996 7986
369 Switzerland 13395 A 7996 7984
370 Switzerland 13396 A 7996 7984
371 Switzerland 13397 G 7995 7993
372 Switzerland 13398 G 7995 7992
373 Switzerland 13399 T 7995 7991
374 Switzerland 13400 T 7994 7989
375 Switzerland 13401 A 7954 7949
376 Switzerland 13402 T 7947 7940
377 Switzerland 13403 G 7946 7941
378 Switzerland 13404 G 7946 7937
379 Switzerland 13405 C 7946 7945
380 Switzerland 13406 T 7946 7942
381 Switzerland 13407 G 7945 7944
382 Switzerland 13408 T 7945 7944
383 Switzerland 13409 A 7945 7944
384 Switzerland 13410 G 7945 7942
385 Switzerland 13411 T 7945 7943
386 Switzerland 13412 T 7945 7942
387 Switzerland 13413 G 7945 7943
388 Switzerland 13414 T 7945 7944
389 Switzerland 13415 G 7945 7944
390 Switzerland 13416 A 7945 7945
391 Switzerland 13417 T 7945 7943
392 Switzerland 13418 C 7945 7943
393 Switzerland 13419 A 7945 7944
394 Switzerland 13420 A 7945 7943
395 Switzerland 13421 C A,T 7945 7940 Leu4386Ile-p.Leu4386Phe
396 Switzerland 13422 T 7945 7942
397 Switzerland 13423 C 7945 7943
398 Switzerland 13424 C T,A 7945 7940 Arg4387Cys-p.Arg4387Ser
399 Switzerland 13425 G A 7945 7942 Arg4387His
400 Switzerland 13426 C T 7945 7938 Arg4387Arg
401 Switzerland 13427 G 7944 7944
402 Switzerland 13428 A 7944 7944
403 Switzerland 13429 A 7944 7944
404 Switzerland 13430 C T 7944 7940 Pro4389Ser
405 Switzerland 13431 C 7944 7943
406 Switzerland 13432 C T 7943 7939 Pro4389Pro
407 Switzerland 13433 A 7943 7943
408 Switzerland 13434 T 7943 7943
409 Switzerland 13435 G 7943 7943
410 Switzerland 13436 C T 7943 7942 Leu4391Phe
411 Switzerland 13437 T 7943 7942
412 Switzerland 13438 T 7943 7943
413 Switzerland 13439 C 7943 7942
414 Switzerland 13440 A 7943 7943
415 Switzerland 13441 G 7940 7940