National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 2                                      
C   39   1                                    
D   21     3                                  
E   12                                        
F   15                                        
G   39                                        
H   9             1                          
I   12                                        
K   24                 1                      
L   24         1         2                    
M   12               1                        
N   21                 2     1       1        
P   24                   1     3              
Q   18                           1            
R   6                             1          
S   18                       1       1 1      
T   39 1             6                 1      
V   27               1                   3    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 South_Africa 13026 C 3065 3065
1 South_Africa 13027 T 3065 3065
2 South_Africa 13028 G 3065 3065
3 South_Africa 13029 G 3065 3065
4 South_Africa 13030 T 3065 3065
5 South_Africa 13031 A 3065 3065
6 South_Africa 13032 A 3065 3065
7 South_Africa 13033 T A 3065 3063 Asn4256Lys
8 South_Africa 13034 G 3065 3065
9 South_Africa 13035 C 3065 3065
10 South_Africa 13036 A 3065 3065
11 South_Africa 13037 A 3065 3065
12 South_Africa 13038 C 3065 3065
13 South_Africa 13039 A 3065 3065
14 South_Africa 13040 G 3065 3065
15 South_Africa 13041 A 3065 3065
16 South_Africa 13042 A 3065 3065
17 South_Africa 13043 G 3065 3065
18 South_Africa 13044 T 3065 3065
19 South_Africa 13045 G A 3065 3064 Val4260Val
20 South_Africa 13046 C 3065 3065
21 South_Africa 13047 C 3065 3065
22 South_Africa 13048 T A 3065 3064 Pro4261Pro
23 South_Africa 13049 G 3065 3065
24 South_Africa 13050 C 3065 3065
25 South_Africa 13051 C T 3065 3059 Ala4262Ala
26 South_Africa 13052 A 3065 3065
27 South_Africa 13053 A 3065 3065
28 South_Africa 13054 T 3065 3065
29 South_Africa 13055 T 3065 3065
30 South_Africa 13056 C 3065 3065
31 South_Africa 13057 A 3065 3065
32 South_Africa 13058 A 3065 3065
33 South_Africa 13059 C T 3065 3046 Thr4265Ile
34 South_Africa 13060 T 3065 3065
35 South_Africa 13061 G 3065 3065
36 South_Africa 13062 T 3065 3065
37 South_Africa 13063 A 3065 3065
38 South_Africa 13064 T 3065 3065
39 South_Africa 13065 T 3065 3065
40 South_Africa 13066 A 3065 3065
41 South_Africa 13067 T 3065 3065
42 South_Africa 13068 C 3065 3065
43 South_Africa 13069 T 3065 3065
44 South_Africa 13070 T 3065 3065
45 South_Africa 13071 T 3065 3065
46 South_Africa 13072 C 3065 3065
47 South_Africa 13073 T 3065 3065
48 South_Africa 13074 G 3065 3065
49 South_Africa 13075 T 3065 3065
50 South_Africa 13076 G 3065 3065
51 South_Africa 13077 C 3065 3065
52 South_Africa 13078 T 3065 3065
53 South_Africa 13079 T 3065 3065
54 South_Africa 13080 T 3065 3065
55 South_Africa 13081 T 3065 3065
56 South_Africa 13082 G 3065 3065
57 South_Africa 13083 C 3065 3065
58 South_Africa 13084 T 3065 3065
59 South_Africa 13085 G 3065 3065
60 South_Africa 13086 T 3065 3065
61 South_Africa 13087 A 3065 3065
62 South_Africa 13088 G 3065 3065
63 South_Africa 13089 A 3065 3065
64 South_Africa 13090 T 3065 3065
65 South_Africa 13091 G 3065 3065
66 South_Africa 13092 C 3065 3065
67 South_Africa 13093 T 3065 3065
68 South_Africa 13094 G 3065 3065
69 South_Africa 13095 C 3065 3065
70 South_Africa 13096 T 3065 3065
71 South_Africa 13097 A 3065 3065
72 South_Africa 13098 A 3065 3065
73 South_Africa 13099 A G 3065 3063 Lys4278Lys
74 South_Africa 13100 G 3065 3065
75 South_Africa 13101 C 3065 3065
76 South_Africa 13102 T 3065 3065
77 South_Africa 13103 T 3065 3065
78 South_Africa 13104 A 3065 3065
79 South_Africa 13105 C 3065 3065
80 South_Africa 13106 A 3065 3065
81 South_Africa 13107 A 3065 3065
82 South_Africa 13108 A 3065 3065
83 South_Africa 13109 G 3065 3065
84 South_Africa 13110 A 3065 3065
85 South_Africa 13111 T 3065 3065
86 South_Africa 13112 T 3065 3065
87 South_Africa 13113 A 3065 3065
88 South_Africa 13114 T 3065 3065
89 South_Africa 13115 C T 3065 3063 Leu4284Leu
90 South_Africa 13116 T 3065 3065
91 South_Africa 13117 A 3065 3065
92 South_Africa 13118 G 3065 3064
93 South_Africa 13119 C 3065 3065
94 South_Africa 13120 T 3065 3065
95 South_Africa 13121 A 3065 3065
96 South_Africa 13122 G A,C 3065 3057 Ser4286Asn-p.Ser4286Thr
97 South_Africa 13123 T 3065 3065
98 South_Africa 13124 G 3065 3065
99 South_Africa 13125 G 3065 3065
100 South_Africa 13126 G 3065 3065
101 South_Africa 13127 G 3065 3065
102 South_Africa 13128 G 3065 3065
103 South_Africa 13129 A 3065 3065
104 South_Africa 13130 C 3065 3064
105 South_Africa 13131 A 3065 3064
106 South_Africa 13132 A 3065 3064
107 South_Africa 13133 C 3065 3064
108 South_Africa 13134 C 3065 3064
109 South_Africa 13135 A 3065 3064
110 South_Africa 13136 A 3065 3064
111 South_Africa 13137 T 3065 3064
112 South_Africa 13138 C 3065 3064
113 South_Africa 13139 A 3065 3064
114 South_Africa 13140 C T 3065 3063 Thr4292Ile
115 South_Africa 13141 T 3065 3064
116 South_Africa 13142 A 3065 3064
117 South_Africa 13143 A 3065 3064
118 South_Africa 13144 T 3065 3064
119 South_Africa 13145 T 3065 3064
120 South_Africa 13146 G 3065 3064
121 South_Africa 13147 T 3065 3065
122 South_Africa 13148 G 3065 3065
123 South_Africa 13149 T 3065 3065
124 South_Africa 13150 T 3065 3065
125 South_Africa 13151 A 3065 3065
126 South_Africa 13152 A 3065 3065
127 South_Africa 13153 G 3065 3065
128 South_Africa 13154 A 3065 3065
129 South_Africa 13155 T 3065 3065
130 South_Africa 13156 G 3065 3065
131 South_Africa 13157 T 3065 3065
132 South_Africa 13158 T 3065 3065
133 South_Africa 13159 G A 3065 3064 Leu4298Leu
134 South_Africa 13160 T 3065 3065
135 South_Africa 13161 G 3065 3065
136 South_Africa 13162 T 3065 3065
137 South_Africa 13163 A 3065 3065
138 South_Africa 13164 C 3065 3065
139 South_Africa 13165 A 3065 3065
140 South_Africa 13166 C 3065 3065
141 South_Africa 13167 A 3065 3065
142 South_Africa 13168 C 3065 3065
143 South_Africa 13169 A 3065 3065
144 South_Africa 13170 C T 3065 3064 Thr4302Ile
145 South_Africa 13171 T 3065 3065
146 South_Africa 13172 G 3065 3065
147 South_Africa 13173 G 3065 3065
148 South_Africa 13174 T 3065 3065
149 South_Africa 13175 A 3065 3065
150 South_Africa 13176 C T 3065 3063 Thr4304Ile
151 South_Africa 13177 T 3065 3065
152 South_Africa 13178 G 3065 3065
153 South_Africa 13179 G 3065 3065
154 South_Africa 13180 T 3065 3065
155 South_Africa 13181 C 3065 3065
156 South_Africa 13182 A 3065 3065
157 South_Africa 13183 G 3065 3065
158 South_Africa 13184 G 3065 3065
159 South_Africa 13185 C 3065 3065
160 South_Africa 13186 A 3065 3065
161 South_Africa 13187 A 3065 3065
162 South_Africa 13188 T 3065 3065
163 South_Africa 13189 A 3065 3065
164 South_Africa 13190 A 3065 3065
165 South_Africa 13191 C 3065 3065
166 South_Africa 13192 A 3065 3065
167 South_Africa 13193 G 3065 3065
168 South_Africa 13194 T 3065 3065
169 South_Africa 13195 T 3065 3065
170 South_Africa 13196 A 3065 3065
171 South_Africa 13197 C T 3065 3064 Thr4311Ile
172 South_Africa 13198 A 3065 3065
173 South_Africa 13199 C 3065 3065
174 South_Africa 13200 C 3065 3065
175 South_Africa 13201 G A 3065 3061 Pro4312Pro
176 South_Africa 13202 G 3065 3065
177 South_Africa 13203 A 3065 3065
178 South_Africa 13204 A 3065 3065
179 South_Africa 13205 G 3065 3065
180 South_Africa 13206 C 3065 3065
181 South_Africa 13207 C T 3065 3064 Ala4314Ala
182 South_Africa 13208 A 3065 3065
183 South_Africa 13209 A 3065 3065
184 South_Africa 13210 T 3065 3065
185 South_Africa 13211 A 3065 3065
186 South_Africa 13212 T 3065 3065
187 South_Africa 13213 G 3065 3065
188 South_Africa 13214 G 3065 3065
189 South_Africa 13215 A 3065 3065
190 South_Africa 13216 T C 3065 3060 Asp4317Asp
191 South_Africa 13217 C 3065 3065
192 South_Africa 13218 A 3065 3065
193 South_Africa 13219 A 3065 3065
194 South_Africa 13220 G 3065 3064
195 South_Africa 13221 A 3065 3064
196 South_Africa 13222 A 3065 3065
197 South_Africa 13223 T 3065 3065
198 South_Africa 13224 C 3065 3065
199 South_Africa 13225 C T 3065 3064 Ser4320Ser
200 South_Africa 13226 T 3065 3065
201 South_Africa 13227 T 3065 3065
202 South_Africa 13228 T 3065 3065
203 South_Africa 13229 G 3065 3065
204 South_Africa 13230 G 3065 3065
205 South_Africa 13231 T 3065 3065
206 South_Africa 13232 G 3065 3065
207 South_Africa 13233 G 3065 3065
208 South_Africa 13234 T 3065 3065
209 South_Africa 13235 G 3065 3065
210 South_Africa 13236 C 3065 3065
211 South_Africa 13237 A 3065 3065
212 South_Africa 13238 T 3065 3065
213 South_Africa 13239 C 3065 3065
214 South_Africa 13240 G 3065 3065
215 South_Africa 13241 T 3065 3065
216 South_Africa 13242 G 3065 3065
217 South_Africa 13243 T 3065 3065
218 South_Africa 13244 T 3065 3065
219 South_Africa 13245 G 3065 3065
220 South_Africa 13246 T 3065 3065
221 South_Africa 13247 C 3065 3065
222 South_Africa 13248 T 3065 3065
223 South_Africa 13249 G 3065 3065
224 South_Africa 13250 T 3065 3065
225 South_Africa 13251 A 3065 3065
226 South_Africa 13252 C 3065 3065
227 South_Africa 13253 T 3065 3065
228 South_Africa 13254 G 3065 3065
229 South_Africa 13255 C T 3065 3064 Cys4330Cys
230 South_Africa 13256 C 3065 3065
231 South_Africa 13257 G 3065 3065
232 South_Africa 13258 T 3065 3065
233 South_Africa 13259 T 3065 3065
234 South_Africa 13260 G 3065 3065
235 South_Africa 13261 C 3065 3065
236 South_Africa 13262 C 3065 3064
237 South_Africa 13263 A 3065 3065
238 South_Africa 13264 C T 3065 3063 His4333His
239 South_Africa 13265 A 3065 3065
240 South_Africa 13266 T 3065 3065
241 South_Africa 13267 A 3065 3065
242 South_Africa 13268 G 3065 3065
243 South_Africa 13269 A 3065 3065
244 South_Africa 13270 T 3065 3065
245 South_Africa 13271 C 3065 3065
246 South_Africa 13272 A 3065 3065
247 South_Africa 13273 T 3065 3065
248 South_Africa 13274 C 3065 3065
249 South_Africa 13275 C T 3065 3063 Pro4337Leu
250 South_Africa 13276 A 3065 3065
251 South_Africa 13277 A 3065 3065
252 South_Africa 13278 A 3065 3065
253 South_Africa 13279 T 3065 3065
254 South_Africa 13280 C 3065 3065
255 South_Africa 13281 C 3065 3065
256 South_Africa 13282 T 3065 3065
257 South_Africa 13283 A 3065 3065
258 South_Africa 13284 A 3065 3065
259 South_Africa 13285 A 3065 3065
260 South_Africa 13286 G 3065 3065
261 South_Africa 13287 G 3065 3065
262 South_Africa 13288 A 3065 3065
263 South_Africa 13289 T 3065 3065
264 South_Africa 13290 T 3065 3065
265 South_Africa 13291 T 3065 3065
266 South_Africa 13292 T 3065 3065
267 South_Africa 13293 G 3065 3065
268 South_Africa 13294 T 3065 3065
269 South_Africa 13295 G 3065 3065
270 South_Africa 13296 A 3065 3065
271 South_Africa 13297 C T 3065 3064 Asp4344Asp
272 South_Africa 13298 T 3065 3065
273 South_Africa 13299 T 3065 3065
274 South_Africa 13300 A 3065 3065
275 South_Africa 13301 A 3065 3065
276 South_Africa 13302 A 3065 3065
277 South_Africa 13303 A 3065 3065
278 South_Africa 13304 G 3065 3065
279 South_Africa 13305 G 3065 3065
280 South_Africa 13306 T 3065 3065
281 South_Africa 13307 A 3065 3065
282 South_Africa 13308 A 3065 3065
283 South_Africa 13309 G 3065 3065
284 South_Africa 13310 T 3065 3065
285 South_Africa 13311 A 3065 3065
286 South_Africa 13312 T 3065 3065
287 South_Africa 13313 G 3065 3065
288 South_Africa 13314 T 3065 3065
289 South_Africa 13315 A 3065 3065
290 South_Africa 13316 C 3065 3065
291 South_Africa 13317 A 3065 3065
292 South_Africa 13318 A 3065 3065
293 South_Africa 13319 A 3065 3065
294 South_Africa 13320 T 3065 3065
295 South_Africa 13321 A 3065 3065
296 South_Africa 13322 C 3065 3065
297 South_Africa 13323 C 3065 3065
298 South_Africa 13324 T 3065 3065
299 South_Africa 13325 A 3065 3065
300 South_Africa 13326 C 3065 3065
301 South_Africa 13327 A 3065 3065
302 South_Africa 13328 A 3065 3065
303 South_Africa 13329 C 3065 3065
304 South_Africa 13330 T 3065 3065
305 South_Africa 13331 T 3065 3065
306 South_Africa 13332 G 3065 3065
307 South_Africa 13333 T 3065 3065
308 South_Africa 13334 G 3065 3065
309 South_Africa 13335 C 3065 3065
310 South_Africa 13336 T 3065 3065
311 South_Africa 13337 A 3065 3065
312 South_Africa 13338 A G 3065 3064 Asn4358Ser
313 South_Africa 13339 T G 3065 3064 Asn4358Lys
314 South_Africa 13340 G 3065 3065
315 South_Africa 13341 A 3065 3064
316 South_Africa 13342 C T 3065 3062 Asp4359Asp
317 South_Africa 13343 C 3065 3064
318 South_Africa 13344 C 3065 3064
319 South_Africa 13345 T 3065 3064
320 South_Africa 13346 G 3065 3064
321 South_Africa 13347 T 3065 3064
322 South_Africa 13348 G T 3065 3062 Val4361Val
323 South_Africa 13349 G 3065 3064
324 South_Africa 13350 G 3065 3064
325 South_Africa 13351 T 3065 3064
326 South_Africa 13352 T 3065 3064
327 South_Africa 13353 T 3065 3064
328 South_Africa 13354 T 3065 3064
329 South_Africa 13355 A G 3065 3063 Thr4364Ala
330 South_Africa 13356 C T 3065 3061 Thr4364Ile
331 South_Africa 13357 A 3065 3064
332 South_Africa 13358 C 3065 3064
333 South_Africa 13359 T 3065 3064
334 South_Africa 13360 T 3065 3064
335 South_Africa 13361 A 3065 3064
336 South_Africa 13362 A 3065 3064
337 South_Africa 13363 A 3065 3064
338 South_Africa 13364 A 3065 3064
339 South_Africa 13365 A 3065 3064
340 South_Africa 13366 C T 3065 3063 Asn4367Asn
341 South_Africa 13367 A 3065 3064
342 South_Africa 13368 C 3065 3064
343 South_Africa 13369 A 3065 3064
344 South_Africa 13370 G 3065 3064
345 South_Africa 13371 T 3065 3064
346 South_Africa 13372 C 3065 3064
347 South_Africa 13373 T 3065 3064
348 South_Africa 13374 G 3065 3064
349 South_Africa 13375 T 3065 3064
350 South_Africa 13376 A 3065 3064
351 South_Africa 13377 C 3065 3064
352 South_Africa 13378 C T 3065 3061 Thr4371Thr
353 South_Africa 13379 G A 3062 3057 Val4372Ile
354 South_Africa 13380 T 3058 3054
355 South_Africa 13381 C T 3058 3049 Val4372Val
356 South_Africa 13382 T 3056 3051
357 South_Africa 13383 G 3053 3047
358 South_Africa 13384 C 3053 3048
359 South_Africa 13385 G 3052 3050
360 South_Africa 13386 G 3052 3052
361 South_Africa 13387 T 3050 3049
362 South_Africa 13388 A 3050 3049
363 South_Africa 13389 T 3049 3048
364 South_Africa 13390 G 3048 3047
365 South_Africa 13391 T 3048 3047
366 South_Africa 13392 G 3047 3046
367 South_Africa 13393 G 3046 3044
368 South_Africa 13394 A 3046 3044
369 South_Africa 13395 A 3042 3040
370 South_Africa 13396 A 3042 3040
371 South_Africa 13397 G 3042 3040
372 South_Africa 13398 G 3041 3039
373 South_Africa 13399 T 3041 3039
374 South_Africa 13400 T 3036 3034
375 South_Africa 13401 A 3033 3031
376 South_Africa 13402 T 3032 3030
377 South_Africa 13403 G 3032 3030
378 South_Africa 13404 G 3032 3030
379 South_Africa 13405 C 3032 3030
380 South_Africa 13406 T 3032 3030
381 South_Africa 13407 G 3032 3030
382 South_Africa 13408 T 3032 3030
383 South_Africa 13409 A 3032 3030
384 South_Africa 13410 G 3032 3030
385 South_Africa 13411 T 3032 3030
386 South_Africa 13412 T 3032 3032
387 South_Africa 13413 G 3032 3032
388 South_Africa 13414 T 3032 3032
389 South_Africa 13415 G 3031 3031
390 South_Africa 13416 A 3031 3030
391 South_Africa 13417 T 3031 3030
392 South_Africa 13418 C 3031 3030
393 South_Africa 13419 A 3031 3030
394 South_Africa 13420 A G 3031 3029 Gln4385Gln
395 South_Africa 13421 C T 3031 3029 Leu4386Phe
396 South_Africa 13422 T 3031 3030
397 South_Africa 13423 C 3031 3030
398 South_Africa 13424 C 3031 3029
399 South_Africa 13425 G 3031 3029
400 South_Africa 13426 C T 3031 3028 Arg4387Arg
401 South_Africa 13427 G 3031 3029
402 South_Africa 13428 A 3031 3030
403 South_Africa 13429 A 3031 3030
404 South_Africa 13430 C 3031 3031
405 South_Africa 13431 C 3031 3031
406 South_Africa 13432 C T 3030 3029 Pro4389Pro
407 South_Africa 13433 A 3030 3030
408 South_Africa 13434 T 3030 3030
409 South_Africa 13435 G T 3030 3029 Met4390Ile
410 South_Africa 13436 C 3030 3030
411 South_Africa 13437 T 3030 3030
412 South_Africa 13438 T 3030 3030
413 South_Africa 13439 C 3030 3030
414 South_Africa 13440 A 3030 3030
415 South_Africa 13441 G 3028 3028