National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                   2    
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Slovakia 13026 C 96 96
1 Slovakia 13027 T 96 96
2 Slovakia 13028 G 96 96
3 Slovakia 13029 G 96 96
4 Slovakia 13030 T 96 96
5 Slovakia 13031 A 96 96
6 Slovakia 13032 A 96 96
7 Slovakia 13033 T 96 96
8 Slovakia 13034 G 96 96
9 Slovakia 13035 C 96 96
10 Slovakia 13036 A 96 96
11 Slovakia 13037 A 96 96
12 Slovakia 13038 C 96 96
13 Slovakia 13039 A 96 96
14 Slovakia 13040 G 96 96
15 Slovakia 13041 A 96 96
16 Slovakia 13042 A 96 96
17 Slovakia 13043 G 96 96
18 Slovakia 13044 T 96 96
19 Slovakia 13045 G 96 96
20 Slovakia 13046 C 96 96
21 Slovakia 13047 C 96 96
22 Slovakia 13048 T 96 96
23 Slovakia 13049 G 96 96
24 Slovakia 13050 C 96 96
25 Slovakia 13051 C 96 96
26 Slovakia 13052 A 96 96
27 Slovakia 13053 A 96 96
28 Slovakia 13054 T 96 96
29 Slovakia 13055 T 96 96
30 Slovakia 13056 C 96 96
31 Slovakia 13057 A 96 96
32 Slovakia 13058 A 96 96
33 Slovakia 13059 C 96 96
34 Slovakia 13060 T 96 96
35 Slovakia 13061 G 96 96
36 Slovakia 13062 T 96 96
37 Slovakia 13063 A 96 96
38 Slovakia 13064 T 96 96
39 Slovakia 13065 T 96 96
40 Slovakia 13066 A 96 96
41 Slovakia 13067 T 96 96
42 Slovakia 13068 C 96 96
43 Slovakia 13069 T 96 96
44 Slovakia 13070 T 96 96
45 Slovakia 13071 T 96 96
46 Slovakia 13072 C 96 96
47 Slovakia 13073 T 96 96
48 Slovakia 13074 G 96 96
49 Slovakia 13075 T 96 96
50 Slovakia 13076 G 96 96
51 Slovakia 13077 C 96 96
52 Slovakia 13078 T 96 96
53 Slovakia 13079 T 96 96
54 Slovakia 13080 T 96 96
55 Slovakia 13081 T 96 96
56 Slovakia 13082 G 96 96
57 Slovakia 13083 C 96 96
58 Slovakia 13084 T 96 95
59 Slovakia 13085 G 96 96
60 Slovakia 13086 T 96 96
61 Slovakia 13087 A 96 96
62 Slovakia 13088 G 96 96
63 Slovakia 13089 A 96 96
64 Slovakia 13090 T 96 96
65 Slovakia 13091 G 96 96
66 Slovakia 13092 C 96 96
67 Slovakia 13093 T 96 96
68 Slovakia 13094 G 96 96
69 Slovakia 13095 C 96 96
70 Slovakia 13096 T 96 96
71 Slovakia 13097 A 96 96
72 Slovakia 13098 A 96 96
73 Slovakia 13099 A 96 96
74 Slovakia 13100 G 96 96
75 Slovakia 13101 C 96 96
76 Slovakia 13102 T 96 96
77 Slovakia 13103 T 96 96
78 Slovakia 13104 A 96 96
79 Slovakia 13105 C 96 96
80 Slovakia 13106 A 96 96
81 Slovakia 13107 A 96 96
82 Slovakia 13108 A 96 96
83 Slovakia 13109 G 96 96
84 Slovakia 13110 A 96 96
85 Slovakia 13111 T 96 96
86 Slovakia 13112 T 96 96
87 Slovakia 13113 A 96 96
88 Slovakia 13114 T 96 96
89 Slovakia 13115 C 96 96
90 Slovakia 13116 T 96 96
91 Slovakia 13117 A 96 96
92 Slovakia 13118 G 96 96
93 Slovakia 13119 C T 96 95 Ala4285Val
94 Slovakia 13120 T 96 96
95 Slovakia 13121 A 96 96
96 Slovakia 13122 G 96 96
97 Slovakia 13123 T 96 96
98 Slovakia 13124 G 96 96
99 Slovakia 13125 G 96 96
100 Slovakia 13126 G 96 96
101 Slovakia 13127 G 96 96
102 Slovakia 13128 G 96 96
103 Slovakia 13129 A 96 96
104 Slovakia 13130 C 96 96
105 Slovakia 13131 A 96 96
106 Slovakia 13132 A 96 96
107 Slovakia 13133 C 96 96
108 Slovakia 13134 C 96 96
109 Slovakia 13135 A 96 96
110 Slovakia 13136 A 96 96
111 Slovakia 13137 T 96 96
112 Slovakia 13138 C 96 96
113 Slovakia 13139 A 96 96
114 Slovakia 13140 C 96 96
115 Slovakia 13141 T 96 96
116 Slovakia 13142 A 96 96
117 Slovakia 13143 A 96 96
118 Slovakia 13144 T 96 96
119 Slovakia 13145 T 96 96
120 Slovakia 13146 G 96 96
121 Slovakia 13147 T 96 96
122 Slovakia 13148 G 96 96
123 Slovakia 13149 T 96 96
124 Slovakia 13150 T 96 96
125 Slovakia 13151 A 96 96
126 Slovakia 13152 A 96 96
127 Slovakia 13153 G 96 96
128 Slovakia 13154 A 96 96
129 Slovakia 13155 T 96 96
130 Slovakia 13156 G 96 96
131 Slovakia 13157 T 96 96
132 Slovakia 13158 T 96 96
133 Slovakia 13159 G 96 96
134 Slovakia 13160 T 96 96
135 Slovakia 13161 G 96 96
136 Slovakia 13162 T 96 96
137 Slovakia 13163 A 96 96
138 Slovakia 13164 C 96 96
139 Slovakia 13165 A 96 96
140 Slovakia 13166 C 96 96
141 Slovakia 13167 A 96 96
142 Slovakia 13168 C 96 96
143 Slovakia 13169 A 96 96
144 Slovakia 13170 C 96 96
145 Slovakia 13171 T 96 96
146 Slovakia 13172 G 96 96
147 Slovakia 13173 G 96 96
148 Slovakia 13174 T 96 96
149 Slovakia 13175 A 96 96
150 Slovakia 13176 C 96 96
151 Slovakia 13177 T 96 96
152 Slovakia 13178 G 96 96
153 Slovakia 13179 G 96 96
154 Slovakia 13180 T 96 96
155 Slovakia 13181 C 96 96
156 Slovakia 13182 A 96 96
157 Slovakia 13183 G 96 96
158 Slovakia 13184 G 96 96
159 Slovakia 13185 C 96 96
160 Slovakia 13186 A 96 96
161 Slovakia 13187 A 96 96
162 Slovakia 13188 T 96 96
163 Slovakia 13189 A 96 96
164 Slovakia 13190 A 96 96
165 Slovakia 13191 C 96 96
166 Slovakia 13192 A 96 96
167 Slovakia 13193 G 96 96
168 Slovakia 13194 T 96 96
169 Slovakia 13195 T 96 96
170 Slovakia 13196 A 96 96
171 Slovakia 13197 C 96 96
172 Slovakia 13198 A 96 96
173 Slovakia 13199 C 96 96
174 Slovakia 13200 C 96 96
175 Slovakia 13201 G 96 96
176 Slovakia 13202 G 96 96
177 Slovakia 13203 A 96 96
178 Slovakia 13204 A 96 96
179 Slovakia 13205 G 96 96
180 Slovakia 13206 C 96 96
181 Slovakia 13207 C 96 96
182 Slovakia 13208 A 96 96
183 Slovakia 13209 A 96 96
184 Slovakia 13210 T 96 96
185 Slovakia 13211 A 96 96
186 Slovakia 13212 T 96 96
187 Slovakia 13213 G 96 96
188 Slovakia 13214 G 96 96
189 Slovakia 13215 A 96 96
190 Slovakia 13216 T 96 96
191 Slovakia 13217 C 96 96
192 Slovakia 13218 A 96 96
193 Slovakia 13219 A 96 96
194 Slovakia 13220 G 96 96
195 Slovakia 13221 A 96 96
196 Slovakia 13222 A 96 96
197 Slovakia 13223 T 96 96
198 Slovakia 13224 C 96 96
199 Slovakia 13225 C 96 96
200 Slovakia 13226 T 96 96
201 Slovakia 13227 T 96 96
202 Slovakia 13228 T 96 96
203 Slovakia 13229 G 96 96
204 Slovakia 13230 G 96 96
205 Slovakia 13231 T 96 96
206 Slovakia 13232 G 96 96
207 Slovakia 13233 G 96 96
208 Slovakia 13234 T 96 96
209 Slovakia 13235 G 96 96
210 Slovakia 13236 C 96 96
211 Slovakia 13237 A 96 96
212 Slovakia 13238 T 96 96
213 Slovakia 13239 C 96 96
214 Slovakia 13240 G 96 96
215 Slovakia 13241 T 96 96
216 Slovakia 13242 G 96 96
217 Slovakia 13243 T 96 96
218 Slovakia 13244 T 96 96
219 Slovakia 13245 G 96 96
220 Slovakia 13246 T 96 96
221 Slovakia 13247 C 96 96
222 Slovakia 13248 T 96 96
223 Slovakia 13249 G 96 96
224 Slovakia 13250 T 96 96
225 Slovakia 13251 A 96 96
226 Slovakia 13252 C 96 96
227 Slovakia 13253 T 96 96
228 Slovakia 13254 G 96 96
229 Slovakia 13255 C 96 96
230 Slovakia 13256 C 96 96
231 Slovakia 13257 G 96 96
232 Slovakia 13258 T 96 96
233 Slovakia 13259 T 96 96
234 Slovakia 13260 G 96 96
235 Slovakia 13261 C 96 96
236 Slovakia 13262 C 96 96
237 Slovakia 13263 A 96 96
238 Slovakia 13264 C 96 96
239 Slovakia 13265 A 96 96
240 Slovakia 13266 T 96 96
241 Slovakia 13267 A 96 96
242 Slovakia 13268 G 96 96
243 Slovakia 13269 A 96 96
244 Slovakia 13270 T 96 96
245 Slovakia 13271 C 96 96
246 Slovakia 13272 A 96 96
247 Slovakia 13273 T 96 96
248 Slovakia 13274 C 96 96
249 Slovakia 13275 C 96 96
250 Slovakia 13276 A 96 96
251 Slovakia 13277 A 96 96
252 Slovakia 13278 A 96 96
253 Slovakia 13279 T 96 96
254 Slovakia 13280 C 96 96
255 Slovakia 13281 C 96 96
256 Slovakia 13282 T 96 96
257 Slovakia 13283 A 96 96
258 Slovakia 13284 A 96 96
259 Slovakia 13285 A 96 96
260 Slovakia 13286 G 96 96
261 Slovakia 13287 G 96 96
262 Slovakia 13288 A 96 96
263 Slovakia 13289 T 96 96
264 Slovakia 13290 T 96 96
265 Slovakia 13291 T 96 96
266 Slovakia 13292 T 96 96
267 Slovakia 13293 G 96 96
268 Slovakia 13294 T 96 96
269 Slovakia 13295 G 96 96
270 Slovakia 13296 A 96 96
271 Slovakia 13297 C 96 96
272 Slovakia 13298 T 96 96
273 Slovakia 13299 T 96 96
274 Slovakia 13300 A 96 96
275 Slovakia 13301 A 96 96
276 Slovakia 13302 A 96 96
277 Slovakia 13303 A 96 96
278 Slovakia 13304 G 96 96
279 Slovakia 13305 G 96 96
280 Slovakia 13306 T 96 96
281 Slovakia 13307 A 96 96
282 Slovakia 13308 A 96 96
283 Slovakia 13309 G 96 96
284 Slovakia 13310 T 96 96
285 Slovakia 13311 A 96 96
286 Slovakia 13312 T 96 96
287 Slovakia 13313 G 96 96
288 Slovakia 13314 T 96 96
289 Slovakia 13315 A 96 96
290 Slovakia 13316 C 96 96
291 Slovakia 13317 A 96 96
292 Slovakia 13318 A 96 96
293 Slovakia 13319 A 96 96
294 Slovakia 13320 T 96 96
295 Slovakia 13321 A 96 96
296 Slovakia 13322 C 96 96
297 Slovakia 13323 C 96 96
298 Slovakia 13324 T 96 96
299 Slovakia 13325 A 96 96
300 Slovakia 13326 C 96 96
301 Slovakia 13327 A 96 96
302 Slovakia 13328 A 96 96
303 Slovakia 13329 C 96 96
304 Slovakia 13330 T 96 96
305 Slovakia 13331 T 96 96
306 Slovakia 13332 G 96 96
307 Slovakia 13333 T 96 96
308 Slovakia 13334 G 96 96
309 Slovakia 13335 C T 96 95 Ala4357Val
310 Slovakia 13336 T 96 96
311 Slovakia 13337 A 96 96
312 Slovakia 13338 A 96 96
313 Slovakia 13339 T 96 96
314 Slovakia 13340 G 96 96
315 Slovakia 13341 A 96 96
316 Slovakia 13342 C 96 96
317 Slovakia 13343 C 96 96
318 Slovakia 13344 C 96 96
319 Slovakia 13345 T 96 96
320 Slovakia 13346 G 96 96
321 Slovakia 13347 T 96 96
322 Slovakia 13348 G 96 96
323 Slovakia 13349 G 96 96
324 Slovakia 13350 G 96 96
325 Slovakia 13351 T 96 96
326 Slovakia 13352 T 96 96
327 Slovakia 13353 T 96 96
328 Slovakia 13354 T 96 96
329 Slovakia 13355 A 96 96
330 Slovakia 13356 C 96 96
331 Slovakia 13357 A 96 96
332 Slovakia 13358 C 96 96
333 Slovakia 13359 T 96 96
334 Slovakia 13360 T 96 96
335 Slovakia 13361 A 96 96
336 Slovakia 13362 A 96 96
337 Slovakia 13363 A 96 96
338 Slovakia 13364 A 96 96
339 Slovakia 13365 A 96 96
340 Slovakia 13366 C 96 96
341 Slovakia 13367 A 96 96
342 Slovakia 13368 C 96 96
343 Slovakia 13369 A 96 96
344 Slovakia 13370 G 96 96
345 Slovakia 13371 T 96 96
346 Slovakia 13372 C 96 96
347 Slovakia 13373 T 96 96
348 Slovakia 13374 G 96 96
349 Slovakia 13375 T 96 96
350 Slovakia 13376 A 96 96
351 Slovakia 13377 C 96 96
352 Slovakia 13378 C 96 96
353 Slovakia 13379 G 96 96
354 Slovakia 13380 T 96 96
355 Slovakia 13381 C 96 96
356 Slovakia 13382 T 96 96
357 Slovakia 13383 G 96 96
358 Slovakia 13384 C 96 96
359 Slovakia 13385 G 96 96
360 Slovakia 13386 G 96 96
361 Slovakia 13387 T 96 96
362 Slovakia 13388 A 96 96
363 Slovakia 13389 T 96 96
364 Slovakia 13390 G 96 96
365 Slovakia 13391 T 96 96
366 Slovakia 13392 G 96 96
367 Slovakia 13393 G 96 96
368 Slovakia 13394 A 96 96
369 Slovakia 13395 A 96 96
370 Slovakia 13396 A 96 96
371 Slovakia 13397 G 96 96
372 Slovakia 13398 G 96 96
373 Slovakia 13399 T 96 96
374 Slovakia 13400 T 96 96
375 Slovakia 13401 A 96 96
376 Slovakia 13402 T 96 96
377 Slovakia 13403 G 96 96
378 Slovakia 13404 G 96 96
379 Slovakia 13405 C 96 96
380 Slovakia 13406 T 96 96
381 Slovakia 13407 G 96 96
382 Slovakia 13408 T 96 96
383 Slovakia 13409 A 96 96
384 Slovakia 13410 G 96 96
385 Slovakia 13411 T 96 96
386 Slovakia 13412 T 96 96
387 Slovakia 13413 G 96 96
388 Slovakia 13414 T 96 96
389 Slovakia 13415 G 96 96
390 Slovakia 13416 A 96 96
391 Slovakia 13417 T 96 96
392 Slovakia 13418 C 96 96
393 Slovakia 13419 A 96 96
394 Slovakia 13420 A 96 96
395 Slovakia 13421 C 96 96
396 Slovakia 13422 T 96 96
397 Slovakia 13423 C 96 96
398 Slovakia 13424 C 96 96
399 Slovakia 13425 G 96 96
400 Slovakia 13426 C 96 96
401 Slovakia 13427 G 96 96
402 Slovakia 13428 A 96 96
403 Slovakia 13429 A 96 96
404 Slovakia 13430 C 96 96
405 Slovakia 13431 C 96 96
406 Slovakia 13432 C 96 96
407 Slovakia 13433 A 96 96
408 Slovakia 13434 T 96 96
409 Slovakia 13435 G 96 96
410 Slovakia 13436 C 96 96
411 Slovakia 13437 T 96 96
412 Slovakia 13438 T 96 96
413 Slovakia 13439 C 96 96
414 Slovakia 13440 A 96 96
415 Slovakia 13441 G 96 96