National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 1                             1        
C   39   2                                    
D   21       1                                
E   12                                        
F   15                                        
G   39   1                                    
H   9                                        
I   12               1                        
K   24                                        
L   24                   1                    
M   12               1                 1      
N   21                                        
P   24                               1        
Q   18                                        
R   6                                        
S   18               1                        
T   39                                 1      
V   27                                   1    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Singapore 13026 C 1731 1731
1 Singapore 13027 T 1731 1731
2 Singapore 13028 G 1731 1731
3 Singapore 13029 G 1731 1731
4 Singapore 13030 T 1731 1731
5 Singapore 13031 A 1731 1731
6 Singapore 13032 A 1731 1731
7 Singapore 13033 T 1731 1731
8 Singapore 13034 G 1731 1731
9 Singapore 13035 C 1731 1731
10 Singapore 13036 A 1731 1731
11 Singapore 13037 A 1731 1731
12 Singapore 13038 C 1731 1731
13 Singapore 13039 A 1731 1731
14 Singapore 13040 G 1731 1731
15 Singapore 13041 A 1731 1731
16 Singapore 13042 A 1731 1731
17 Singapore 13043 G 1731 1731
18 Singapore 13044 T 1731 1731
19 Singapore 13045 G 1731 1731
20 Singapore 13046 C 1731 1731
21 Singapore 13047 C 1731 1731
22 Singapore 13048 T 1731 1731
23 Singapore 13049 G 1731 1731
24 Singapore 13050 C 1731 1731
25 Singapore 13051 C T 1731 1729 Ala4262Ala
26 Singapore 13052 A 1731 1731
27 Singapore 13053 A 1731 1731
28 Singapore 13054 T 1731 1731
29 Singapore 13055 T 1731 1731
30 Singapore 13056 C 1731 1731
31 Singapore 13057 A 1731 1731
32 Singapore 13058 A 1731 1731
33 Singapore 13059 C 1731 1731
34 Singapore 13060 T 1731 1731
35 Singapore 13061 G 1731 1731
36 Singapore 13062 T 1731 1731
37 Singapore 13063 A 1731 1731
38 Singapore 13064 T 1731 1731
39 Singapore 13065 T 1731 1731
40 Singapore 13066 A 1731 1731
41 Singapore 13067 T 1731 1731
42 Singapore 13068 C 1731 1731
43 Singapore 13069 T 1731 1731
44 Singapore 13070 T 1731 1731
45 Singapore 13071 T 1731 1731
46 Singapore 13072 C 1731 1730
47 Singapore 13073 T 1731 1731
48 Singapore 13074 G 1731 1731
49 Singapore 13075 T 1731 1731
50 Singapore 13076 G 1731 1731
51 Singapore 13077 C 1731 1731
52 Singapore 13078 T 1731 1731
53 Singapore 13079 T 1731 1731
54 Singapore 13080 T 1731 1731
55 Singapore 13081 T 1731 1731
56 Singapore 13082 G 1731 1731
57 Singapore 13083 C 1731 1731
58 Singapore 13084 T 1731 1731
59 Singapore 13085 G 1731 1731
60 Singapore 13086 T 1731 1731
61 Singapore 13087 A 1731 1731
62 Singapore 13088 G 1731 1730
63 Singapore 13089 A 1731 1731
64 Singapore 13090 T 1731 1731
65 Singapore 13091 G 1731 1731
66 Singapore 13092 C 1731 1731
67 Singapore 13093 T 1731 1731
68 Singapore 13094 G 1731 1731
69 Singapore 13095 C 1731 1731
70 Singapore 13096 T 1731 1731
71 Singapore 13097 A 1731 1731
72 Singapore 13098 A 1731 1731
73 Singapore 13099 A 1731 1730
74 Singapore 13100 G 1731 1731
75 Singapore 13101 C 1731 1731
76 Singapore 13102 T 1731 1731
77 Singapore 13103 T 1731 1731
78 Singapore 13104 A 1731 1731
79 Singapore 13105 C 1731 1731
80 Singapore 13106 A 1731 1731
81 Singapore 13107 A 1731 1731
82 Singapore 13108 A 1731 1731
83 Singapore 13109 G 1731 1731
84 Singapore 13110 A 1731 1731
85 Singapore 13111 T 1731 1731
86 Singapore 13112 T 1731 1731
87 Singapore 13113 A 1731 1731
88 Singapore 13114 T 1731 1731
89 Singapore 13115 C T 1731 1726 Leu4284Leu
90 Singapore 13116 T 1731 1731
91 Singapore 13117 A 1731 1731
92 Singapore 13118 G 1731 1731
93 Singapore 13119 C 1731 1731
94 Singapore 13120 T 1731 1731
95 Singapore 13121 A 1731 1731
96 Singapore 13122 G 1731 1731
97 Singapore 13123 T 1731 1731
98 Singapore 13124 G 1731 1731
99 Singapore 13125 G 1731 1731
100 Singapore 13126 G 1731 1731
101 Singapore 13127 G 1731 1731
102 Singapore 13128 G 1731 1731
103 Singapore 13129 A 1731 1731
104 Singapore 13130 C 1731 1731
105 Singapore 13131 A 1731 1731
106 Singapore 13132 A 1731 1731
107 Singapore 13133 C 1731 1731
108 Singapore 13134 C 1731 1731
109 Singapore 13135 A 1731 1731
110 Singapore 13136 A 1731 1731
111 Singapore 13137 T 1731 1731
112 Singapore 13138 C T 1731 1730 Ile4291Ile
113 Singapore 13139 A 1731 1731
114 Singapore 13140 C 1731 1731
115 Singapore 13141 T 1731 1731
116 Singapore 13142 A 1731 1731
117 Singapore 13143 A 1731 1731
118 Singapore 13144 T 1731 1731
119 Singapore 13145 T 1731 1731
120 Singapore 13146 G 1731 1731
121 Singapore 13147 T 1731 1731
122 Singapore 13148 G 1731 1731
123 Singapore 13149 T 1731 1731
124 Singapore 13150 T 1731 1731
125 Singapore 13151 A 1731 1731
126 Singapore 13152 A 1731 1731
127 Singapore 13153 G 1731 1731
128 Singapore 13154 A 1731 1731
129 Singapore 13155 T 1731 1731
130 Singapore 13156 G 1731 1731
131 Singapore 13157 T 1731 1731
132 Singapore 13158 T 1731 1731
133 Singapore 13159 G 1731 1731
134 Singapore 13160 T 1731 1731
135 Singapore 13161 G 1731 1731
136 Singapore 13162 T 1731 1731
137 Singapore 13163 A 1731 1731
138 Singapore 13164 C 1731 1731
139 Singapore 13165 A 1731 1731
140 Singapore 13166 C 1731 1731
141 Singapore 13167 A 1731 1731
142 Singapore 13168 C 1731 1731
143 Singapore 13169 A 1731 1731
144 Singapore 13170 C 1731 1731
145 Singapore 13171 T 1731 1731
146 Singapore 13172 G 1731 1731
147 Singapore 13173 G 1731 1731
148 Singapore 13174 T 1731 1731
149 Singapore 13175 A 1731 1731
150 Singapore 13176 C 1731 1731
151 Singapore 13177 T 1731 1731
152 Singapore 13178 G 1731 1731
153 Singapore 13179 G 1731 1731
154 Singapore 13180 T 1731 1731
155 Singapore 13181 C 1731 1731
156 Singapore 13182 A 1731 1731
157 Singapore 13183 G 1731 1731
158 Singapore 13184 G 1731 1731
159 Singapore 13185 C 1731 1731
160 Singapore 13186 A 1731 1731
161 Singapore 13187 A 1731 1731
162 Singapore 13188 T 1731 1731
163 Singapore 13189 A 1731 1731
164 Singapore 13190 A 1731 1731
165 Singapore 13191 C 1731 1731
166 Singapore 13192 A 1731 1731
167 Singapore 13193 G 1731 1731
168 Singapore 13194 T 1731 1731
169 Singapore 13195 T 1731 1731
170 Singapore 13196 A 1731 1731
171 Singapore 13197 C 1731 1731
172 Singapore 13198 A 1731 1731
173 Singapore 13199 C 1731 1731
174 Singapore 13200 C 1731 1731
175 Singapore 13201 G 1731 1731
176 Singapore 13202 G 1731 1731
177 Singapore 13203 A 1731 1731
178 Singapore 13204 A 1731 1731
179 Singapore 13205 G T 1731 1728 Ala4314Ser
180 Singapore 13206 C 1731 1731
181 Singapore 13207 C 1731 1731
182 Singapore 13208 A 1731 1731
183 Singapore 13209 A 1731 1731
184 Singapore 13210 T 1731 1731
185 Singapore 13211 A 1731 1731
186 Singapore 13212 T 1731 1731
187 Singapore 13213 G 1731 1731
188 Singapore 13214 G 1731 1731
189 Singapore 13215 A 1731 1731
190 Singapore 13216 T 1731 1730
191 Singapore 13217 C 1731 1731
192 Singapore 13218 A 1731 1731
193 Singapore 13219 A 1731 1731
194 Singapore 13220 G 1731 1731
195 Singapore 13221 A 1731 1731
196 Singapore 13222 A 1731 1731
197 Singapore 13223 T 1731 1731
198 Singapore 13224 C 1731 1731
199 Singapore 13225 C 1731 1731
200 Singapore 13226 T 1731 1731
201 Singapore 13227 T 1731 1731
202 Singapore 13228 T 1731 1731
203 Singapore 13229 G 1731 1731
204 Singapore 13230 G 1731 1731
205 Singapore 13231 T 1731 1731
206 Singapore 13232 G 1731 1731
207 Singapore 13233 G 1731 1731
208 Singapore 13234 T 1731 1731
209 Singapore 13235 G 1731 1731
210 Singapore 13236 C 1731 1731
211 Singapore 13237 A 1731 1731
212 Singapore 13238 T 1731 1731
213 Singapore 13239 C 1731 1731
214 Singapore 13240 G 1731 1731
215 Singapore 13241 T 1731 1731
216 Singapore 13242 G 1731 1731
217 Singapore 13243 T 1731 1731
218 Singapore 13244 T 1731 1731
219 Singapore 13245 G 1731 1731
220 Singapore 13246 T 1731 1731
221 Singapore 13247 C 1731 1731
222 Singapore 13248 T 1731 1731
223 Singapore 13249 G 1731 1731
224 Singapore 13250 T 1731 1731
225 Singapore 13251 A 1731 1731
226 Singapore 13252 C 1731 1731
227 Singapore 13253 T 1731 1731
228 Singapore 13254 G 1731 1731
229 Singapore 13255 C 1731 1731
230 Singapore 13256 C 1731 1731
231 Singapore 13257 G 1731 1731
232 Singapore 13258 T 1731 1731
233 Singapore 13259 T 1731 1731
234 Singapore 13260 G 1731 1730
235 Singapore 13261 C T 1731 1725 Cys4332Cys
236 Singapore 13262 C 1731 1731
237 Singapore 13263 A 1731 1731
238 Singapore 13264 C 1731 1731
239 Singapore 13265 A 1731 1731
240 Singapore 13266 T 1731 1731
241 Singapore 13267 A 1731 1731
242 Singapore 13268 G 1731 1731
243 Singapore 13269 A 1731 1731
244 Singapore 13270 T 1731 1731
245 Singapore 13271 C 1731 1731
246 Singapore 13272 A 1731 1731
247 Singapore 13273 T 1731 1731
248 Singapore 13274 C T 1731 1730 Pro4337Ser
249 Singapore 13275 C 1731 1731
250 Singapore 13276 A 1731 1731
251 Singapore 13277 A 1731 1731
252 Singapore 13278 A 1731 1731
253 Singapore 13279 T 1731 1731
254 Singapore 13280 C 1731 1731
255 Singapore 13281 C 1731 1731
256 Singapore 13282 T 1731 1731
257 Singapore 13283 A 1731 1731
258 Singapore 13284 A 1731 1731
259 Singapore 13285 A 1731 1730
260 Singapore 13286 G 1731 1731
261 Singapore 13287 G 1731 1731
262 Singapore 13288 A 1731 1731
263 Singapore 13289 T 1731 1731
264 Singapore 13290 T 1731 1731
265 Singapore 13291 T 1731 1731
266 Singapore 13292 T 1731 1731
267 Singapore 13293 G 1731 1731
268 Singapore 13294 T 1731 1731
269 Singapore 13295 G 1731 1731
270 Singapore 13296 A 1731 1731
271 Singapore 13297 C A 1731 1730 Asp4344Glu
272 Singapore 13298 T 1731 1731
273 Singapore 13299 T 1731 1731
274 Singapore 13300 A 1731 1731
275 Singapore 13301 A 1731 1731
276 Singapore 13302 A 1731 1731
277 Singapore 13303 A 1731 1731
278 Singapore 13304 G 1731 1731
279 Singapore 13305 G 1731 1731
280 Singapore 13306 T 1731 1731
281 Singapore 13307 A 1731 1731
282 Singapore 13308 A 1731 1731
283 Singapore 13309 G 1731 1731
284 Singapore 13310 T 1731 1731
285 Singapore 13311 A 1731 1731
286 Singapore 13312 T 1731 1731
287 Singapore 13313 G 1731 1731
288 Singapore 13314 T 1731 1731
289 Singapore 13315 A 1731 1731
290 Singapore 13316 C 1731 1731
291 Singapore 13317 A 1731 1731
292 Singapore 13318 A 1731 1731
293 Singapore 13319 A 1731 1731
294 Singapore 13320 T 1731 1731
295 Singapore 13321 A 1731 1731
296 Singapore 13322 C 1731 1731
297 Singapore 13323 C 1731 1731
298 Singapore 13324 T 1731 1731
299 Singapore 13325 A 1731 1731
300 Singapore 13326 C 1731 1731
301 Singapore 13327 A 1731 1731
302 Singapore 13328 A 1731 1731
303 Singapore 13329 C 1731 1731
304 Singapore 13330 T 1731 1731
305 Singapore 13331 T 1731 1731
306 Singapore 13332 G 1731 1731
307 Singapore 13333 T 1731 1731
308 Singapore 13334 G 1731 1731
309 Singapore 13335 C 1731 1731
310 Singapore 13336 T 1731 1731
311 Singapore 13337 A 1731 1731
312 Singapore 13338 A 1731 1731
313 Singapore 13339 T 1731 1731
314 Singapore 13340 G 1731 1731
315 Singapore 13341 A 1731 1731
316 Singapore 13342 C 1731 1731
317 Singapore 13343 C 1731 1731
318 Singapore 13344 C 1731 1731
319 Singapore 13345 T 1731 1731
320 Singapore 13346 G 1731 1731
321 Singapore 13347 T 1731 1731
322 Singapore 13348 G T 1731 1730 Val4361Val
323 Singapore 13349 G 1731 1731
324 Singapore 13350 G 1731 1731
325 Singapore 13351 T 1731 1731
326 Singapore 13352 T 1731 1731
327 Singapore 13353 T 1731 1731
328 Singapore 13354 T 1731 1731
329 Singapore 13355 A 1731 1731
330 Singapore 13356 C 1731 1731
331 Singapore 13357 A 1731 1731
332 Singapore 13358 C 1731 1731
333 Singapore 13359 T 1731 1731
334 Singapore 13360 T 1731 1731
335 Singapore 13361 A 1731 1731
336 Singapore 13362 A 1731 1731
337 Singapore 13363 A 1731 1731
338 Singapore 13364 A 1731 1731
339 Singapore 13365 A 1731 1731
340 Singapore 13366 C 1731 1731
341 Singapore 13367 A 1731 1731
342 Singapore 13368 C 1731 1731
343 Singapore 13369 A 1731 1731
344 Singapore 13370 G 1731 1731
345 Singapore 13371 T 1731 1731
346 Singapore 13372 C 1731 1731
347 Singapore 13373 T 1731 1731
348 Singapore 13374 G 1731 1731
349 Singapore 13375 T 1731 1731
350 Singapore 13376 A 1731 1731
351 Singapore 13377 C 1731 1731
352 Singapore 13378 C T 1731 1730 Thr4371Thr
353 Singapore 13379 G 1731 1731
354 Singapore 13380 T 1731 1731
355 Singapore 13381 C 1731 1731
356 Singapore 13382 T 1731 1731
357 Singapore 13383 G 1731 1731
358 Singapore 13384 C 1731 1731
359 Singapore 13385 G 1731 1731
360 Singapore 13386 G 1731 1731
361 Singapore 13387 T 1731 1731
362 Singapore 13388 A 1731 1731
363 Singapore 13389 T 1731 1731
364 Singapore 13390 G 1731 1731
365 Singapore 13391 T 1731 1731
366 Singapore 13392 G 1731 1731
367 Singapore 13393 G 1731 1731
368 Singapore 13394 A 1731 1731
369 Singapore 13395 A 1731 1731
370 Singapore 13396 A 1731 1731
371 Singapore 13397 G T 1731 1730 Gly4378Cys
372 Singapore 13398 G 1731 1731
373 Singapore 13399 T 1731 1731
374 Singapore 13400 T 1731 1731
375 Singapore 13401 A 1731 1731
376 Singapore 13402 T 1731 1731
377 Singapore 13403 G 1731 1731
378 Singapore 13404 G 1731 1731
379 Singapore 13405 C 1731 1731
380 Singapore 13406 T 1731 1731
381 Singapore 13407 G 1731 1731
382 Singapore 13408 T C 1731 1729 Cys4381Cys
383 Singapore 13409 A 1731 1731
384 Singapore 13410 G T 1731 1730 Ser4382Ile
385 Singapore 13411 T 1731 1731
386 Singapore 13412 T 1731 1731
387 Singapore 13413 G 1731 1731
388 Singapore 13414 T 1731 1731
389 Singapore 13415 G 1731 1731
390 Singapore 13416 A 1731 1731
391 Singapore 13417 T 1731 1731
392 Singapore 13418 C 1731 1731
393 Singapore 13419 A 1731 1731
394 Singapore 13420 A 1731 1731
395 Singapore 13421 C 1731 1731
396 Singapore 13422 T 1731 1731
397 Singapore 13423 C 1731 1730
398 Singapore 13424 C 1731 1731
399 Singapore 13425 G 1731 1731
400 Singapore 13426 C 1731 1730
401 Singapore 13427 G 1731 1731
402 Singapore 13428 A 1731 1731
403 Singapore 13429 A 1731 1731
404 Singapore 13430 C 1731 1731
405 Singapore 13431 C 1731 1731
406 Singapore 13432 C 1731 1731
407 Singapore 13433 A 1731 1731
408 Singapore 13434 T C 1731 1730 Met4390Thr
409 Singapore 13435 G A 1731 1730 Met4390Ile
410 Singapore 13436 C 1731 1731
411 Singapore 13437 T 1731 1731
412 Singapore 13438 T 1731 1731
413 Singapore 13439 C 1731 1731
414 Singapore 13440 A 1731 1731
415 Singapore 13441 G 1731 1731