National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39           1                           1
D   21                                        
E   12       1                                
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                 1      
N   21                       1       1        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                   1    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Senegal 13026 C 136 136
1 Senegal 13027 T 136 136
2 Senegal 13028 G 136 136
3 Senegal 13029 G 136 136
4 Senegal 13030 T 136 136
5 Senegal 13031 A 136 136
6 Senegal 13032 A 136 136
7 Senegal 13033 T C 136 135 Asn4256Asn
8 Senegal 13034 G 136 136
9 Senegal 13035 C 136 136
10 Senegal 13036 A 136 136
11 Senegal 13037 A 136 136
12 Senegal 13038 C 136 136
13 Senegal 13039 A 136 136
14 Senegal 13040 G 136 136
15 Senegal 13041 A 136 136
16 Senegal 13042 A 136 136
17 Senegal 13043 G 136 136
18 Senegal 13044 T 136 136
19 Senegal 13045 G 136 136
20 Senegal 13046 C 136 136
21 Senegal 13047 C 136 136
22 Senegal 13048 T 136 136
23 Senegal 13049 G 136 136
24 Senegal 13050 C 136 136
25 Senegal 13051 C 136 136
26 Senegal 13052 A 136 136
27 Senegal 13053 A 136 136
28 Senegal 13054 T 136 136
29 Senegal 13055 T 136 136
30 Senegal 13056 C 136 136
31 Senegal 13057 A 136 136
32 Senegal 13058 A 136 136
33 Senegal 13059 C 136 136
34 Senegal 13060 T 136 136
35 Senegal 13061 G 136 136
36 Senegal 13062 T 136 136
37 Senegal 13063 A 136 136
38 Senegal 13064 T 136 136
39 Senegal 13065 T 136 136
40 Senegal 13066 A 136 136
41 Senegal 13067 T 136 136
42 Senegal 13068 C 136 136
43 Senegal 13069 T 136 136
44 Senegal 13070 T 136 136
45 Senegal 13071 T 136 136
46 Senegal 13072 C 136 136
47 Senegal 13073 T 136 136
48 Senegal 13074 G 136 136
49 Senegal 13075 T 136 136
50 Senegal 13076 G 136 136
51 Senegal 13077 C 136 136
52 Senegal 13078 T 136 136
53 Senegal 13079 T 136 136
54 Senegal 13080 T 136 136
55 Senegal 13081 T 136 136
56 Senegal 13082 G 136 136
57 Senegal 13083 C 136 136
58 Senegal 13084 T 136 136
59 Senegal 13085 G 136 136
60 Senegal 13086 T 136 136
61 Senegal 13087 A 136 136
62 Senegal 13088 G 136 136
63 Senegal 13089 A 136 136
64 Senegal 13090 T 136 136
65 Senegal 13091 G 136 136
66 Senegal 13092 C 136 136
67 Senegal 13093 T 136 136
68 Senegal 13094 G 136 136
69 Senegal 13095 C 136 136
70 Senegal 13096 T 136 136
71 Senegal 13097 A 136 136
72 Senegal 13098 A 136 136
73 Senegal 13099 A 136 136
74 Senegal 13100 G 136 136
75 Senegal 13101 C 136 136
76 Senegal 13102 T 136 136
77 Senegal 13103 T 136 136
78 Senegal 13104 A 136 136
79 Senegal 13105 C 136 136
80 Senegal 13106 A 136 136
81 Senegal 13107 A 136 136
82 Senegal 13108 A 136 136
83 Senegal 13109 G 136 136
84 Senegal 13110 A 136 136
85 Senegal 13111 T 136 136
86 Senegal 13112 T 136 136
87 Senegal 13113 A 136 136
88 Senegal 13114 T 136 136
89 Senegal 13115 C 136 136
90 Senegal 13116 T 136 136
91 Senegal 13117 A 136 136
92 Senegal 13118 G 136 136
93 Senegal 13119 C 136 136
94 Senegal 13120 T 136 136
95 Senegal 13121 A 136 136
96 Senegal 13122 G 136 136
97 Senegal 13123 T 136 136
98 Senegal 13124 G 136 136
99 Senegal 13125 G 136 136
100 Senegal 13126 G 136 136
101 Senegal 13127 G 136 136
102 Senegal 13128 G 136 136
103 Senegal 13129 A 136 136
104 Senegal 13130 C 136 136
105 Senegal 13131 A 136 136
106 Senegal 13132 A 136 136
107 Senegal 13133 C 136 136
108 Senegal 13134 C 136 136
109 Senegal 13135 A 136 136
110 Senegal 13136 A 136 136
111 Senegal 13137 T 136 136
112 Senegal 13138 C 136 136
113 Senegal 13139 A 136 136
114 Senegal 13140 C 136 136
115 Senegal 13141 T 136 136
116 Senegal 13142 A 136 136
117 Senegal 13143 A 136 136
118 Senegal 13144 T 136 136
119 Senegal 13145 T 136 136
120 Senegal 13146 G 136 136
121 Senegal 13147 T 136 136
122 Senegal 13148 G 136 136
123 Senegal 13149 T 136 136
124 Senegal 13150 T 136 136
125 Senegal 13151 A 136 136
126 Senegal 13152 A 136 136
127 Senegal 13153 G 136 136
128 Senegal 13154 A 136 136
129 Senegal 13155 T 136 136
130 Senegal 13156 G 136 136
131 Senegal 13157 T 136 136
132 Senegal 13158 T 136 136
133 Senegal 13159 G 136 136
134 Senegal 13160 T 136 136
135 Senegal 13161 G 136 136
136 Senegal 13162 T 136 136
137 Senegal 13163 A 136 136
138 Senegal 13164 C 136 136
139 Senegal 13165 A 136 136
140 Senegal 13166 C 136 136
141 Senegal 13167 A 136 136
142 Senegal 13168 C 136 136
143 Senegal 13169 A 136 136
144 Senegal 13170 C 136 136
145 Senegal 13171 T 136 136
146 Senegal 13172 G 136 136
147 Senegal 13173 G 136 136
148 Senegal 13174 T 136 136
149 Senegal 13175 A 136 136
150 Senegal 13176 C 136 136
151 Senegal 13177 T 136 136
152 Senegal 13178 G 136 136
153 Senegal 13179 G 136 136
154 Senegal 13180 T 136 136
155 Senegal 13181 C 136 136
156 Senegal 13182 A 136 136
157 Senegal 13183 G 136 136
158 Senegal 13184 G 136 136
159 Senegal 13185 C 136 136
160 Senegal 13186 A 136 136
161 Senegal 13187 A 136 136
162 Senegal 13188 T 136 136
163 Senegal 13189 A 136 136
164 Senegal 13190 A 136 136
165 Senegal 13191 C 136 136
166 Senegal 13192 A 136 136
167 Senegal 13193 G 136 136
168 Senegal 13194 T 136 136
169 Senegal 13195 T 136 136
170 Senegal 13196 A 136 136
171 Senegal 13197 C 136 136
172 Senegal 13198 A 136 136
173 Senegal 13199 C 136 136
174 Senegal 13200 C 136 136
175 Senegal 13201 G 136 136
176 Senegal 13202 G 136 136
177 Senegal 13203 A 136 136
178 Senegal 13204 A G 136 134 Glu4313Glu
179 Senegal 13205 G 136 136
180 Senegal 13206 C 136 136
181 Senegal 13207 C 136 136
182 Senegal 13208 A 136 136
183 Senegal 13209 A 136 136
184 Senegal 13210 T 136 136
185 Senegal 13211 A 136 136
186 Senegal 13212 T 136 136
187 Senegal 13213 G 136 136
188 Senegal 13214 G 136 136
189 Senegal 13215 A 136 136
190 Senegal 13216 T 136 136
191 Senegal 13217 C 136 136
192 Senegal 13218 A 136 136
193 Senegal 13219 A 136 136
194 Senegal 13220 G 136 136
195 Senegal 13221 A 136 136
196 Senegal 13222 A 136 136
197 Senegal 13223 T 136 136
198 Senegal 13224 C 136 136
199 Senegal 13225 C 136 136
200 Senegal 13226 T 136 136
201 Senegal 13227 T 136 136
202 Senegal 13228 T 136 136
203 Senegal 13229 G 136 136
204 Senegal 13230 G 136 136
205 Senegal 13231 T 136 136
206 Senegal 13232 G 136 136
207 Senegal 13233 G 136 136
208 Senegal 13234 T 136 136
209 Senegal 13235 G 136 136
210 Senegal 13236 C 136 136
211 Senegal 13237 A 136 136
212 Senegal 13238 T 136 136
213 Senegal 13239 C 136 136
214 Senegal 13240 G 136 136
215 Senegal 13241 T 136 136
216 Senegal 13242 G 136 136
217 Senegal 13243 T 136 136
218 Senegal 13244 T 136 136
219 Senegal 13245 G 136 136
220 Senegal 13246 T 136 136
221 Senegal 13247 C 136 136
222 Senegal 13248 T 136 136
223 Senegal 13249 G 136 136
224 Senegal 13250 T 136 136
225 Senegal 13251 A 136 136
226 Senegal 13252 C 136 136
227 Senegal 13253 T 136 136
228 Senegal 13254 G 136 136
229 Senegal 13255 C 136 136
230 Senegal 13256 C 136 136
231 Senegal 13257 G 136 136
232 Senegal 13258 T 136 136
233 Senegal 13259 T 136 136
234 Senegal 13260 G 136 136
235 Senegal 13261 C 136 136
236 Senegal 13262 C 136 136
237 Senegal 13263 A 136 136
238 Senegal 13264 C 136 136
239 Senegal 13265 A 136 136
240 Senegal 13266 T 136 136
241 Senegal 13267 A 136 136
242 Senegal 13268 G 136 136
243 Senegal 13269 A 136 136
244 Senegal 13270 T 136 136
245 Senegal 13271 C 136 136
246 Senegal 13272 A 136 136
247 Senegal 13273 T 136 136
248 Senegal 13274 C 136 136
249 Senegal 13275 C 136 136
250 Senegal 13276 A 136 136
251 Senegal 13277 A 136 136
252 Senegal 13278 A G 136 134 Asn4338Ser
253 Senegal 13279 T 136 136
254 Senegal 13280 C 136 136
255 Senegal 13281 C 136 136
256 Senegal 13282 T 136 136
257 Senegal 13283 A 136 136
258 Senegal 13284 A 136 136
259 Senegal 13285 A 136 136
260 Senegal 13286 G 136 136
261 Senegal 13287 G 136 136
262 Senegal 13288 A 136 136
263 Senegal 13289 T 136 136
264 Senegal 13290 T 136 136
265 Senegal 13291 T 136 136
266 Senegal 13292 T 136 136
267 Senegal 13293 G 136 136
268 Senegal 13294 T 136 136
269 Senegal 13295 G 136 136
270 Senegal 13296 A 136 136
271 Senegal 13297 C 136 136
272 Senegal 13298 T 136 136
273 Senegal 13299 T 136 136
274 Senegal 13300 A 136 136
275 Senegal 13301 A 136 136
276 Senegal 13302 A 136 136
277 Senegal 13303 A 136 136
278 Senegal 13304 G 136 136
279 Senegal 13305 G 136 136
280 Senegal 13306 T 136 136
281 Senegal 13307 A 136 136
282 Senegal 13308 A 136 136
283 Senegal 13309 G 136 136
284 Senegal 13310 T 136 136
285 Senegal 13311 A 136 136
286 Senegal 13312 T 136 136
287 Senegal 13313 G 136 136
288 Senegal 13314 T 136 136
289 Senegal 13315 A 136 136
290 Senegal 13316 C 136 136
291 Senegal 13317 A 136 136
292 Senegal 13318 A 136 136
293 Senegal 13319 A 136 136
294 Senegal 13320 T 136 136
295 Senegal 13321 A 136 136
296 Senegal 13322 C 136 136
297 Senegal 13323 C 136 136
298 Senegal 13324 T 136 136
299 Senegal 13325 A 136 136
300 Senegal 13326 C 136 136
301 Senegal 13327 A 136 136
302 Senegal 13328 A 136 136
303 Senegal 13329 C 136 136
304 Senegal 13330 T 136 136
305 Senegal 13331 T 136 136
306 Senegal 13332 G 136 136
307 Senegal 13333 T 136 136
308 Senegal 13334 G 136 136
309 Senegal 13335 C 136 136
310 Senegal 13336 T 136 136
311 Senegal 13337 A 136 136
312 Senegal 13338 A 136 136
313 Senegal 13339 T 136 136
314 Senegal 13340 G 136 136
315 Senegal 13341 A 136 136
316 Senegal 13342 C 136 136
317 Senegal 13343 C 136 136
318 Senegal 13344 C 136 136
319 Senegal 13345 T 136 136
320 Senegal 13346 G 136 136
321 Senegal 13347 T 136 136
322 Senegal 13348 G 136 136
323 Senegal 13349 G 136 136
324 Senegal 13350 G 136 136
325 Senegal 13351 T 136 136
326 Senegal 13352 T 136 136
327 Senegal 13353 T 136 136
328 Senegal 13354 T 136 136
329 Senegal 13355 A 136 136
330 Senegal 13356 C 136 136
331 Senegal 13357 A 136 136
332 Senegal 13358 C 136 136
333 Senegal 13359 T 136 136
334 Senegal 13360 T 136 136
335 Senegal 13361 A 136 136
336 Senegal 13362 A 136 136
337 Senegal 13363 A 136 136
338 Senegal 13364 A 136 136
339 Senegal 13365 A 136 136
340 Senegal 13366 C 136 136
341 Senegal 13367 A 136 136
342 Senegal 13368 C 136 136
343 Senegal 13369 A 136 136
344 Senegal 13370 G 136 136
345 Senegal 13371 T 136 136
346 Senegal 13372 C 136 136
347 Senegal 13373 T 136 136
348 Senegal 13374 G 136 136
349 Senegal 13375 T 136 136
350 Senegal 13376 A 136 136
351 Senegal 13377 C 136 136
352 Senegal 13378 C 136 136
353 Senegal 13379 G 136 136
354 Senegal 13380 T 136 136
355 Senegal 13381 C A 136 135 Val4372Val
356 Senegal 13382 T G 136 135 Cys4373Gly
357 Senegal 13383 G A 136 135 Cys4373Tyr
358 Senegal 13384 C 136 136
359 Senegal 13385 G 136 136
360 Senegal 13386 G 136 136
361 Senegal 13387 T 136 136
362 Senegal 13388 A 136 136
363 Senegal 13389 T C 136 135 Met4375Thr
364 Senegal 13390 G 136 136
365 Senegal 13391 T 136 136
366 Senegal 13392 G 136 135
367 Senegal 13393 G 136 134
368 Senegal 13394 A 136 134
369 Senegal 13395 A 136 134
370 Senegal 13396 A 136 134
371 Senegal 13397 G 136 134
372 Senegal 13398 G 136 134
373 Senegal 13399 T 136 134
374 Senegal 13400 T 136 134
375 Senegal 13401 A 136 134
376 Senegal 13402 T 136 134
377 Senegal 13403 G 136 133
378 Senegal 13404 G 136 134
379 Senegal 13405 C 136 135
380 Senegal 13406 T 136 135
381 Senegal 13407 G 136 135
382 Senegal 13408 T 136 135
383 Senegal 13409 A 136 135
384 Senegal 13410 G 136 134
385 Senegal 13411 T 136 136
386 Senegal 13412 T 136 136
387 Senegal 13413 G 136 136
388 Senegal 13414 T 136 135
389 Senegal 13415 G 136 136
390 Senegal 13416 A 136 135
391 Senegal 13417 T 136 136
392 Senegal 13418 C 136 136
393 Senegal 13419 A 136 136
394 Senegal 13420 A 136 136
395 Senegal 13421 C 136 136
396 Senegal 13422 T 136 136
397 Senegal 13423 C 136 135
398 Senegal 13424 C 136 135
399 Senegal 13425 G 136 136
400 Senegal 13426 C 136 135
401 Senegal 13427 G 136 136
402 Senegal 13428 A 136 135
403 Senegal 13429 A 136 136
404 Senegal 13430 C 136 136
405 Senegal 13431 C 136 136
406 Senegal 13432 C 136 136
407 Senegal 13433 A 136 136
408 Senegal 13434 T 136 135
409 Senegal 13435 G 136 136
410 Senegal 13436 C 136 136
411 Senegal 13437 T 135 135
412 Senegal 13438 T 135 135
413 Senegal 13439 C 135 135
414 Senegal 13440 A 135 135
415 Senegal 13441 G 135 135