National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 2                               1 1    
C   39                               1        
D   21     3                                  
E   12       1                                
F   15                                        
G   39           2                            
H   9             1                          
I   12                                   1    
K   24                 1           1          
L   24         1     1   4               1    
M   12                                 1 2    
N   21                       1                
P   24                         2     1        
Q   18                                        
R   6                                        
S   18           1                            
T   39 1             3                 1      
V   27               1                   3    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Russia 13026 C 1808 1808
1 Russia 13027 T 1808 1808
2 Russia 13028 G 1808 1808
3 Russia 13029 G 1808 1808
4 Russia 13030 T 1809 1809
5 Russia 13031 A 1809 1809
6 Russia 13032 A 1809 1809
7 Russia 13033 T 1809 1809
8 Russia 13034 G 1809 1809
9 Russia 13035 C 1809 1809
10 Russia 13036 A 1809 1809
11 Russia 13037 A 1809 1809
12 Russia 13038 C 1809 1809
13 Russia 13039 A 1809 1809
14 Russia 13040 G 1809 1809
15 Russia 13041 A 1809 1809
16 Russia 13042 A 1809 1809
17 Russia 13043 G 1809 1809
18 Russia 13044 T 1809 1809
19 Russia 13045 G 1809 1809
20 Russia 13046 C 1809 1809
21 Russia 13047 C 1809 1809
22 Russia 13048 T 1809 1809
23 Russia 13049 G 1809 1809
24 Russia 13050 C 1809 1809
25 Russia 13051 C 1809 1809
26 Russia 13052 A 1809 1809
27 Russia 13053 A 1809 1809
28 Russia 13054 T C 1809 1808 Asn4263Asn
29 Russia 13055 T 1809 1809
30 Russia 13056 C 1809 1809
31 Russia 13057 A 1809 1809
32 Russia 13058 A 1809 1809
33 Russia 13059 C T 1809 1805 Thr4265Ile
34 Russia 13060 T 1809 1809
35 Russia 13061 G 1809 1809
36 Russia 13062 T 1809 1809
37 Russia 13063 A G 1809 1807 Val4266Val
38 Russia 13064 T 1809 1809
39 Russia 13065 T 1809 1809
40 Russia 13066 A 1809 1809
41 Russia 13067 T 1809 1809
42 Russia 13068 C 1809 1809
43 Russia 13069 T 1809 1809
44 Russia 13070 T 1809 1809
45 Russia 13071 T 1809 1809
46 Russia 13072 C 1809 1809
47 Russia 13073 T 1809 1809
48 Russia 13074 G 1809 1809
49 Russia 13075 T 1809 1809
50 Russia 13076 G 1809 1809
51 Russia 13077 C 1809 1809
52 Russia 13078 T 1809 1809
53 Russia 13079 T 1809 1809
54 Russia 13080 T 1809 1809
55 Russia 13081 T 1809 1809
56 Russia 13082 G 1809 1809
57 Russia 13083 C 1809 1809
58 Russia 13084 T 1809 1809
59 Russia 13085 G 1809 1809
60 Russia 13086 T 1809 1809
61 Russia 13087 A 1809 1809
62 Russia 13088 G 1809 1809
63 Russia 13089 A 1809 1809
64 Russia 13090 T 1809 1809
65 Russia 13091 G 1809 1809
66 Russia 13092 C 1809 1809
67 Russia 13093 T C 1809 1808 Ala4276Ala
68 Russia 13094 G 1809 1809
69 Russia 13095 C 1809 1809
70 Russia 13096 T 1809 1809
71 Russia 13097 A 1809 1809
72 Russia 13098 A 1809 1809
73 Russia 13099 A 1809 1809
74 Russia 13100 G 1809 1809
75 Russia 13101 C 1809 1809
76 Russia 13102 T 1809 1809
77 Russia 13103 T 1809 1809
78 Russia 13104 A 1809 1809
79 Russia 13105 C 1809 1809
80 Russia 13106 A 1809 1809
81 Russia 13107 A 1809 1809
82 Russia 13108 A 1809 1809
83 Russia 13109 G 1809 1809
84 Russia 13110 A 1809 1809
85 Russia 13111 T 1809 1809
86 Russia 13112 T 1809 1809
87 Russia 13113 A 1809 1809
88 Russia 13114 T 1809 1809
89 Russia 13115 C T 1809 1806 Leu4284Leu
90 Russia 13116 T 1809 1809
91 Russia 13117 A 1809 1809
92 Russia 13118 G A 1809 1799 Ala4285Thr
93 Russia 13119 C 1809 1809
94 Russia 13120 T 1809 1809
95 Russia 13121 A 1809 1809
96 Russia 13122 G 1809 1809
97 Russia 13123 T 1809 1809
98 Russia 13124 G 1809 1809
99 Russia 13125 G 1809 1809
100 Russia 13126 G T 1809 1807 Gly4287Gly
101 Russia 13127 G 1809 1809
102 Russia 13128 G 1809 1809
103 Russia 13129 A 1809 1809
104 Russia 13130 C 1809 1809
105 Russia 13131 A 1809 1809
106 Russia 13132 A 1809 1809
107 Russia 13133 C 1809 1809
108 Russia 13134 C 1809 1809
109 Russia 13135 A 1809 1809
110 Russia 13136 A 1809 1809
111 Russia 13137 T 1809 1809
112 Russia 13138 C 1809 1809
113 Russia 13139 A 1809 1809
114 Russia 13140 C 1809 1809
115 Russia 13141 T 1809 1809
116 Russia 13142 A 1809 1809
117 Russia 13143 A 1809 1809
118 Russia 13144 T 1809 1809
119 Russia 13145 T 1809 1809
120 Russia 13146 G 1809 1809
121 Russia 13147 T 1809 1809
122 Russia 13148 G 1809 1809
123 Russia 13149 T 1809 1809
124 Russia 13150 T 1809 1809
125 Russia 13151 A 1809 1809
126 Russia 13152 A 1809 1809
127 Russia 13153 G 1809 1809
128 Russia 13154 A 1809 1809
129 Russia 13155 T 1809 1809
130 Russia 13156 G 1809 1809
131 Russia 13157 T 1809 1809
132 Russia 13158 T 1809 1809
133 Russia 13159 G 1809 1809
134 Russia 13160 T 1809 1809
135 Russia 13161 G 1809 1809
136 Russia 13162 T 1809 1809
137 Russia 13163 A 1809 1809
138 Russia 13164 C 1809 1809
139 Russia 13165 A 1809 1809
140 Russia 13166 C 1809 1809
141 Russia 13167 A 1809 1809
142 Russia 13168 C 1809 1809
143 Russia 13169 A 1809 1809
144 Russia 13170 C 1809 1809
145 Russia 13171 T 1809 1809
146 Russia 13172 G 1809 1809
147 Russia 13173 G 1809 1809
148 Russia 13174 T 1809 1809
149 Russia 13175 A 1809 1809
150 Russia 13176 C 1809 1809
151 Russia 13177 T 1809 1809
152 Russia 13178 G 1809 1809
153 Russia 13179 G 1809 1809
154 Russia 13180 T 1809 1809
155 Russia 13181 C 1809 1809
156 Russia 13182 A 1809 1809
157 Russia 13183 G 1809 1809
158 Russia 13184 G 1809 1809
159 Russia 13185 C 1809 1809
160 Russia 13186 A 1809 1809
161 Russia 13187 A 1809 1809
162 Russia 13188 T 1809 1809
163 Russia 13189 A 1809 1809
164 Russia 13190 A 1809 1809
165 Russia 13191 C 1809 1809
166 Russia 13192 A 1809 1809
167 Russia 13193 G 1809 1809
168 Russia 13194 T 1809 1809
169 Russia 13195 T C 1809 1808 Val4310Val
170 Russia 13196 A 1809 1809
171 Russia 13197 C 1809 1809
172 Russia 13198 A 1809 1809
173 Russia 13199 C 1809 1809
174 Russia 13200 C 1809 1809
175 Russia 13201 G A 1809 1805 Pro4312Pro
176 Russia 13202 G 1809 1809
177 Russia 13203 A 1809 1809
178 Russia 13204 A 1809 1809
179 Russia 13205 G 1809 1809
180 Russia 13206 C 1809 1809
181 Russia 13207 C T 1809 1808 Ala4314Ala
182 Russia 13208 A 1809 1809
183 Russia 13209 A 1809 1809
184 Russia 13210 T 1809 1809
185 Russia 13211 A G 1809 1806 Met4316Val
186 Russia 13212 T C 1809 1808 Met4316Thr
187 Russia 13213 G 1809 1809
188 Russia 13214 G 1809 1809
189 Russia 13215 A 1809 1809
190 Russia 13216 T 1809 1809
191 Russia 13217 C 1809 1809
192 Russia 13218 A 1809 1809
193 Russia 13219 A 1809 1809
194 Russia 13220 G 1809 1809
195 Russia 13221 A 1809 1809
196 Russia 13222 A 1809 1809
197 Russia 13223 T 1809 1809
198 Russia 13224 C 1809 1809
199 Russia 13225 C 1809 1809
200 Russia 13226 T 1809 1809
201 Russia 13227 T 1809 1809
202 Russia 13228 T 1809 1809
203 Russia 13229 G 1809 1809
204 Russia 13230 G 1809 1809
205 Russia 13231 T 1809 1809
206 Russia 13232 G 1809 1809
207 Russia 13233 G 1809 1809
208 Russia 13234 T 1809 1809
209 Russia 13235 G 1809 1809
210 Russia 13236 C 1809 1809
211 Russia 13237 A 1809 1809
212 Russia 13238 T 1809 1809
213 Russia 13239 C 1809 1809
214 Russia 13240 G 1809 1809
215 Russia 13241 T 1809 1809
216 Russia 13242 G 1809 1809
217 Russia 13243 T 1809 1809
218 Russia 13244 T 1809 1809
219 Russia 13245 G 1809 1809
220 Russia 13246 T 1809 1809
221 Russia 13247 C T 1809 1808 Leu4328Leu
222 Russia 13248 T 1809 1809
223 Russia 13249 G T 1809 1798 Leu4328Leu
224 Russia 13250 T 1809 1809
225 Russia 13251 A 1809 1809
226 Russia 13252 C 1809 1809
227 Russia 13253 T 1809 1809
228 Russia 13254 G 1809 1809
229 Russia 13255 C 1809 1809
230 Russia 13256 C 1809 1809
231 Russia 13257 G 1809 1809
232 Russia 13258 T 1809 1809
233 Russia 13259 T A 1809 1808 Cys4332Ser
234 Russia 13260 G 1809 1809
235 Russia 13261 C 1809 1809
236 Russia 13262 C 1809 1809
237 Russia 13263 A 1809 1809
238 Russia 13264 C T 1809 1808 His4333His
239 Russia 13265 A 1809 1809
240 Russia 13266 T 1809 1809
241 Russia 13267 A 1809 1809
242 Russia 13268 G 1809 1809
243 Russia 13269 A 1809 1809
244 Russia 13270 T C 1809 1808 Asp4335Asp
245 Russia 13271 C 1809 1809
246 Russia 13272 A 1809 1809
247 Russia 13273 T 1809 1809
248 Russia 13274 C 1809 1809
249 Russia 13275 C 1809 1809
250 Russia 13276 A 1809 1809
251 Russia 13277 A 1809 1809
252 Russia 13278 A 1809 1809
253 Russia 13279 T 1809 1809
254 Russia 13280 C 1809 1809
255 Russia 13281 C 1809 1809
256 Russia 13282 T 1809 1809
257 Russia 13283 A 1809 1809
258 Russia 13284 A 1809 1809
259 Russia 13285 A 1809 1809
260 Russia 13286 G 1809 1809
261 Russia 13287 G 1809 1809
262 Russia 13288 A 1809 1809
263 Russia 13289 T 1809 1809
264 Russia 13290 T 1809 1809
265 Russia 13291 T 1809 1809
266 Russia 13292 T 1809 1809
267 Russia 13293 G 1809 1809
268 Russia 13294 T 1809 1809
269 Russia 13295 G 1809 1809
270 Russia 13296 A 1809 1809
271 Russia 13297 C T 1809 1805 Asp4344Asp
272 Russia 13298 T 1809 1809
273 Russia 13299 T 1809 1809
274 Russia 13300 A 1809 1809
275 Russia 13301 A 1809 1809
276 Russia 13302 A 1809 1809
277 Russia 13303 A 1809 1809
278 Russia 13304 G 1809 1809
279 Russia 13305 G 1809 1809
280 Russia 13306 T 1809 1809
281 Russia 13307 A 1809 1809
282 Russia 13308 A G 1809 1808 Lys4348Arg
283 Russia 13309 G A 1809 1808 Lys4348Lys
284 Russia 13310 T 1809 1809
285 Russia 13311 A 1809 1809
286 Russia 13312 T 1809 1809
287 Russia 13313 G 1809 1809
288 Russia 13314 T 1809 1809
289 Russia 13315 A 1809 1809
290 Russia 13316 C 1809 1809
291 Russia 13317 A 1809 1809
292 Russia 13318 A 1809 1809
293 Russia 13319 A G 1809 1808 Ile4352Val
294 Russia 13320 T 1809 1809
295 Russia 13321 A 1809 1809
296 Russia 13322 C 1809 1809
297 Russia 13323 C 1809 1809
298 Russia 13324 T 1809 1809
299 Russia 13325 A 1809 1809
300 Russia 13326 C 1809 1809
301 Russia 13327 A 1809 1809
302 Russia 13328 A 1809 1809
303 Russia 13329 C T 1809 1807 Thr4355Ile
304 Russia 13330 T 1809 1809
305 Russia 13331 T 1809 1809
306 Russia 13332 G 1809 1809
307 Russia 13333 T 1809 1809
308 Russia 13334 G 1809 1809
309 Russia 13335 C T 1809 1806 Ala4357Val
310 Russia 13336 T 1809 1809
311 Russia 13337 A 1809 1809
312 Russia 13338 A 1809 1809
313 Russia 13339 T 1809 1809
314 Russia 13340 G 1809 1809
315 Russia 13341 A 1809 1809
316 Russia 13342 C 1809 1809
317 Russia 13343 C 1809 1809
318 Russia 13344 C 1809 1809
319 Russia 13345 T 1809 1809
320 Russia 13346 G 1809 1809
321 Russia 13347 T 1809 1809
322 Russia 13348 G T 1809 1808 Val4361Val
323 Russia 13349 G 1809 1809
324 Russia 13350 G 1809 1809
325 Russia 13351 T 1809 1809
326 Russia 13352 T 1809 1809
327 Russia 13353 T 1809 1809
328 Russia 13354 T 1809 1809
329 Russia 13355 A 1809 1809
330 Russia 13356 C T 1809 1803 Thr4364Ile
331 Russia 13357 A 1809 1809
332 Russia 13358 C G,A 1809 1807 Leu4365Val-p.Leu4365Ile
333 Russia 13359 T 1809 1809
334 Russia 13360 T 1809 1809
335 Russia 13361 A 1809 1809
336 Russia 13362 A 1809 1809
337 Russia 13363 A 1809 1809
338 Russia 13364 A 1809 1809
339 Russia 13365 A 1809 1809
340 Russia 13366 C 1809 1809
341 Russia 13367 A G 1809 1808 Thr4368Ala
342 Russia 13368 C 1809 1809
343 Russia 13369 A 1809 1809
344 Russia 13370 G 1809 1809
345 Russia 13371 T 1809 1809
346 Russia 13372 C 1809 1809
347 Russia 13373 T 1809 1809
348 Russia 13374 G 1809 1809
349 Russia 13375 T 1809 1809
350 Russia 13376 A 1809 1809
351 Russia 13377 C 1809 1809
352 Russia 13378 C T 1809 1805 Thr4371Thr
353 Russia 13379 G A 1809 1808 Val4372Ile
354 Russia 13380 T 1809 1809
355 Russia 13381 C 1809 1809
356 Russia 13382 T 1809 1809
357 Russia 13383 G 1809 1809
358 Russia 13384 C 1809 1809
359 Russia 13385 G 1809 1809
360 Russia 13386 G 1809 1809
361 Russia 13387 T 1809 1809
362 Russia 13388 A 1809 1809
363 Russia 13389 T 1809 1809
364 Russia 13390 G 1809 1809
365 Russia 13391 T 1809 1809
366 Russia 13392 G 1809 1809
367 Russia 13393 G 1809 1809
368 Russia 13394 A 1809 1809
369 Russia 13395 A 1809 1809
370 Russia 13396 A 1809 1809
371 Russia 13397 G 1809 1809
372 Russia 13398 G 1809 1809
373 Russia 13399 T 1809 1809
374 Russia 13400 T 1809 1809
375 Russia 13401 A 1809 1809
376 Russia 13402 T 1809 1809
377 Russia 13403 G 1809 1809
378 Russia 13404 G 1809 1809
379 Russia 13405 C T 1809 1808 Gly4380Gly
380 Russia 13406 T 1809 1809
381 Russia 13407 G 1809 1809
382 Russia 13408 T 1809 1809
383 Russia 13409 A G 1809 1808 Ser4382Gly
384 Russia 13410 G 1809 1809
385 Russia 13411 T 1809 1809
386 Russia 13412 T 1809 1809
387 Russia 13413 G 1809 1809
388 Russia 13414 T 1809 1809
389 Russia 13415 G 1809 1809
390 Russia 13416 A 1809 1809
391 Russia 13417 T C 1809 1808 Asp4384Asp
392 Russia 13418 C 1809 1809
393 Russia 13419 A 1809 1809
394 Russia 13420 A 1809 1809
395 Russia 13421 C 1809 1809
396 Russia 13422 T 1809 1809
397 Russia 13423 C 1809 1809
398 Russia 13424 C 1809 1809
399 Russia 13425 G 1809 1809
400 Russia 13426 C 1809 1809
401 Russia 13427 G 1809 1809
402 Russia 13428 A 1809 1809
403 Russia 13429 A G 1809 1808 Glu4388Glu
404 Russia 13430 C T 1809 1808 Pro4389Ser
405 Russia 13431 C 1809 1809
406 Russia 13432 C T 1809 1806 Pro4389Pro
407 Russia 13433 A G 1809 1808 Met4390Val
408 Russia 13434 T 1809 1809
409 Russia 13435 G 1809 1809
410 Russia 13436 C T 1809 1807 Leu4391Phe
411 Russia 13437 T 1809 1809
412 Russia 13438 T C 1809 1808 Leu4391Leu
413 Russia 13439 C 1809 1809
414 Russia 13440 A 1809 1809
415 Russia 13441 G 1809 1809