National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Qatar 13026 C 16 16
1 Qatar 13027 T 16 16
2 Qatar 13028 G 16 16
3 Qatar 13029 G 16 16
4 Qatar 13030 T 16 16
5 Qatar 13031 A 16 16
6 Qatar 13032 A 16 16
7 Qatar 13033 T 16 16
8 Qatar 13034 G 16 16
9 Qatar 13035 C 16 16
10 Qatar 13036 A 16 16
11 Qatar 13037 A 16 16
12 Qatar 13038 C 16 16
13 Qatar 13039 A 16 16
14 Qatar 13040 G 16 16
15 Qatar 13041 A 16 16
16 Qatar 13042 A 16 16
17 Qatar 13043 G 16 16
18 Qatar 13044 T 16 16
19 Qatar 13045 G 16 16
20 Qatar 13046 C 16 16
21 Qatar 13047 C 16 16
22 Qatar 13048 T 16 16
23 Qatar 13049 G 16 16
24 Qatar 13050 C 16 16
25 Qatar 13051 C 16 16
26 Qatar 13052 A 16 16
27 Qatar 13053 A 16 16
28 Qatar 13054 T 16 16
29 Qatar 13055 T 16 16
30 Qatar 13056 C 16 16
31 Qatar 13057 A 16 16
32 Qatar 13058 A 16 16
33 Qatar 13059 C 16 16
34 Qatar 13060 T 16 16
35 Qatar 13061 G 16 16
36 Qatar 13062 T 16 16
37 Qatar 13063 A 16 16
38 Qatar 13064 T 16 16
39 Qatar 13065 T 16 16
40 Qatar 13066 A 16 16
41 Qatar 13067 T 16 16
42 Qatar 13068 C 16 16
43 Qatar 13069 T 16 16
44 Qatar 13070 T 16 16
45 Qatar 13071 T 16 16
46 Qatar 13072 C 16 16
47 Qatar 13073 T 16 16
48 Qatar 13074 G 16 16
49 Qatar 13075 T 16 16
50 Qatar 13076 G 16 16
51 Qatar 13077 C 16 16
52 Qatar 13078 T 16 16
53 Qatar 13079 T 16 16
54 Qatar 13080 T 16 16
55 Qatar 13081 T 16 16
56 Qatar 13082 G 16 16
57 Qatar 13083 C 16 16
58 Qatar 13084 T 16 16
59 Qatar 13085 G 16 16
60 Qatar 13086 T 16 16
61 Qatar 13087 A 16 16
62 Qatar 13088 G 16 16
63 Qatar 13089 A 16 16
64 Qatar 13090 T 16 16
65 Qatar 13091 G 16 16
66 Qatar 13092 C 16 16
67 Qatar 13093 T 16 16
68 Qatar 13094 G 16 16
69 Qatar 13095 C 16 16
70 Qatar 13096 T 16 16
71 Qatar 13097 A 16 16
72 Qatar 13098 A 16 16
73 Qatar 13099 A 16 16
74 Qatar 13100 G 16 16
75 Qatar 13101 C 16 16
76 Qatar 13102 T 16 16
77 Qatar 13103 T 16 16
78 Qatar 13104 A 16 16
79 Qatar 13105 C 16 16
80 Qatar 13106 A 16 16
81 Qatar 13107 A 16 16
82 Qatar 13108 A 16 16
83 Qatar 13109 G 16 16
84 Qatar 13110 A 16 16
85 Qatar 13111 T 16 16
86 Qatar 13112 T 16 16
87 Qatar 13113 A 16 16
88 Qatar 13114 T 16 16
89 Qatar 13115 C 16 16
90 Qatar 13116 T 16 16
91 Qatar 13117 A 16 16
92 Qatar 13118 G 16 16
93 Qatar 13119 C 16 16
94 Qatar 13120 T 16 16
95 Qatar 13121 A 16 16
96 Qatar 13122 G 16 16
97 Qatar 13123 T 16 16
98 Qatar 13124 G 16 16
99 Qatar 13125 G 16 16
100 Qatar 13126 G 16 16
101 Qatar 13127 G 16 16
102 Qatar 13128 G 16 16
103 Qatar 13129 A 16 16
104 Qatar 13130 C 16 16
105 Qatar 13131 A 16 16
106 Qatar 13132 A 16 16
107 Qatar 13133 C 16 16
108 Qatar 13134 C 16 16
109 Qatar 13135 A 16 16
110 Qatar 13136 A 16 16
111 Qatar 13137 T 16 16
112 Qatar 13138 C 16 16
113 Qatar 13139 A 16 16
114 Qatar 13140 C 16 16
115 Qatar 13141 T 16 16
116 Qatar 13142 A 16 16
117 Qatar 13143 A 16 16
118 Qatar 13144 T 16 16
119 Qatar 13145 T 16 16
120 Qatar 13146 G 16 16
121 Qatar 13147 T 16 16
122 Qatar 13148 G 16 16
123 Qatar 13149 T 16 16
124 Qatar 13150 T 16 16
125 Qatar 13151 A 16 16
126 Qatar 13152 A 16 16
127 Qatar 13153 G 16 16
128 Qatar 13154 A 16 16
129 Qatar 13155 T 16 16
130 Qatar 13156 G 16 16
131 Qatar 13157 T 16 16
132 Qatar 13158 T 16 16
133 Qatar 13159 G 16 16
134 Qatar 13160 T 16 16
135 Qatar 13161 G 16 16
136 Qatar 13162 T 16 16
137 Qatar 13163 A 16 16
138 Qatar 13164 C 16 16
139 Qatar 13165 A 16 16
140 Qatar 13166 C 16 16
141 Qatar 13167 A 16 16
142 Qatar 13168 C 16 16
143 Qatar 13169 A 16 16
144 Qatar 13170 C 16 16
145 Qatar 13171 T 16 16
146 Qatar 13172 G 16 16
147 Qatar 13173 G 16 16
148 Qatar 13174 T 16 16
149 Qatar 13175 A 16 16
150 Qatar 13176 C 16 16
151 Qatar 13177 T 16 16
152 Qatar 13178 G 16 16
153 Qatar 13179 G 16 16
154 Qatar 13180 T 16 16
155 Qatar 13181 C 16 16
156 Qatar 13182 A 16 16
157 Qatar 13183 G 16 16
158 Qatar 13184 G 16 16
159 Qatar 13185 C 16 16
160 Qatar 13186 A 16 16
161 Qatar 13187 A 16 16
162 Qatar 13188 T 16 16
163 Qatar 13189 A 16 16
164 Qatar 13190 A 16 16
165 Qatar 13191 C 16 16
166 Qatar 13192 A 16 16
167 Qatar 13193 G 16 16
168 Qatar 13194 T 16 16
169 Qatar 13195 T 16 16
170 Qatar 13196 A 16 16
171 Qatar 13197 C 16 16
172 Qatar 13198 A 16 16
173 Qatar 13199 C 16 16
174 Qatar 13200 C 16 16
175 Qatar 13201 G 16 16
176 Qatar 13202 G 16 16
177 Qatar 13203 A 16 16
178 Qatar 13204 A 16 16
179 Qatar 13205 G 16 16
180 Qatar 13206 C 16 16
181 Qatar 13207 C 16 16
182 Qatar 13208 A 16 16
183 Qatar 13209 A 16 16
184 Qatar 13210 T 16 16
185 Qatar 13211 A 16 16
186 Qatar 13212 T 16 16
187 Qatar 13213 G 16 16
188 Qatar 13214 G 16 16
189 Qatar 13215 A 16 16
190 Qatar 13216 T 16 16
191 Qatar 13217 C 16 16
192 Qatar 13218 A 16 16
193 Qatar 13219 A 16 16
194 Qatar 13220 G 16 16
195 Qatar 13221 A 16 16
196 Qatar 13222 A 16 16
197 Qatar 13223 T 16 16
198 Qatar 13224 C 16 16
199 Qatar 13225 C 16 16
200 Qatar 13226 T 16 16
201 Qatar 13227 T 16 16
202 Qatar 13228 T 16 16
203 Qatar 13229 G 16 16
204 Qatar 13230 G 16 16
205 Qatar 13231 T 16 16
206 Qatar 13232 G 16 16
207 Qatar 13233 G 16 16
208 Qatar 13234 T 16 16
209 Qatar 13235 G 16 16
210 Qatar 13236 C 16 16
211 Qatar 13237 A 16 16
212 Qatar 13238 T 16 16
213 Qatar 13239 C 16 16
214 Qatar 13240 G 16 16
215 Qatar 13241 T 16 16
216 Qatar 13242 G 16 16
217 Qatar 13243 T 16 16
218 Qatar 13244 T 16 16
219 Qatar 13245 G 16 16
220 Qatar 13246 T 16 16
221 Qatar 13247 C 16 16
222 Qatar 13248 T 16 16
223 Qatar 13249 G 16 16
224 Qatar 13250 T 16 16
225 Qatar 13251 A 16 16
226 Qatar 13252 C 16 16
227 Qatar 13253 T 16 16
228 Qatar 13254 G 16 16
229 Qatar 13255 C 16 16
230 Qatar 13256 C 16 16
231 Qatar 13257 G 16 16
232 Qatar 13258 T 16 16
233 Qatar 13259 T 16 16
234 Qatar 13260 G 16 16
235 Qatar 13261 C 16 16
236 Qatar 13262 C 16 16
237 Qatar 13263 A 16 16
238 Qatar 13264 C 16 16
239 Qatar 13265 A 16 16
240 Qatar 13266 T 16 16
241 Qatar 13267 A 16 16
242 Qatar 13268 G 16 16
243 Qatar 13269 A 16 16
244 Qatar 13270 T 16 16
245 Qatar 13271 C 16 16
246 Qatar 13272 A 16 16
247 Qatar 13273 T 16 16
248 Qatar 13274 C 16 16
249 Qatar 13275 C 16 16
250 Qatar 13276 A 16 16
251 Qatar 13277 A 16 16
252 Qatar 13278 A 16 16
253 Qatar 13279 T 16 16
254 Qatar 13280 C 16 16
255 Qatar 13281 C 16 16
256 Qatar 13282 T 16 16
257 Qatar 13283 A 16 16
258 Qatar 13284 A 16 16
259 Qatar 13285 A 16 16
260 Qatar 13286 G 16 16
261 Qatar 13287 G 16 16
262 Qatar 13288 A 16 16
263 Qatar 13289 T 16 16
264 Qatar 13290 T 16 16
265 Qatar 13291 T 16 16
266 Qatar 13292 T 16 16
267 Qatar 13293 G 16 16
268 Qatar 13294 T 16 16
269 Qatar 13295 G 16 16
270 Qatar 13296 A 16 16
271 Qatar 13297 C 16 16
272 Qatar 13298 T 16 16
273 Qatar 13299 T 16 16
274 Qatar 13300 A 16 16
275 Qatar 13301 A 16 16
276 Qatar 13302 A 16 16
277 Qatar 13303 A 16 16
278 Qatar 13304 G 16 16
279 Qatar 13305 G 16 16
280 Qatar 13306 T 16 16
281 Qatar 13307 A 16 16
282 Qatar 13308 A 16 16
283 Qatar 13309 G 16 16
284 Qatar 13310 T 16 16
285 Qatar 13311 A 16 16
286 Qatar 13312 T 16 16
287 Qatar 13313 G 16 16
288 Qatar 13314 T 16 16
289 Qatar 13315 A 16 16
290 Qatar 13316 C 16 16
291 Qatar 13317 A 16 16
292 Qatar 13318 A 16 16
293 Qatar 13319 A 16 16
294 Qatar 13320 T 16 16
295 Qatar 13321 A 16 16
296 Qatar 13322 C 16 16
297 Qatar 13323 C 16 16
298 Qatar 13324 T 16 16
299 Qatar 13325 A 16 16
300 Qatar 13326 C 16 16
301 Qatar 13327 A 16 16
302 Qatar 13328 A 16 16
303 Qatar 13329 C 16 16
304 Qatar 13330 T 16 16
305 Qatar 13331 T 16 16
306 Qatar 13332 G 16 16
307 Qatar 13333 T 16 16
308 Qatar 13334 G 16 16
309 Qatar 13335 C 16 16
310 Qatar 13336 T 16 16
311 Qatar 13337 A 16 16
312 Qatar 13338 A 16 16
313 Qatar 13339 T 16 16
314 Qatar 13340 G 16 16
315 Qatar 13341 A 16 16
316 Qatar 13342 C 16 16
317 Qatar 13343 C 16 16
318 Qatar 13344 C 16 16
319 Qatar 13345 T 16 16
320 Qatar 13346 G 16 16
321 Qatar 13347 T 16 16
322 Qatar 13348 G 16 16
323 Qatar 13349 G 16 16
324 Qatar 13350 G 16 16
325 Qatar 13351 T 16 16
326 Qatar 13352 T 16 16
327 Qatar 13353 T 16 16
328 Qatar 13354 T 16 16
329 Qatar 13355 A 16 16
330 Qatar 13356 C 16 16
331 Qatar 13357 A 16 16
332 Qatar 13358 C 16 16
333 Qatar 13359 T 16 16
334 Qatar 13360 T 16 16
335 Qatar 13361 A 16 16
336 Qatar 13362 A 16 16
337 Qatar 13363 A 16 16
338 Qatar 13364 A 16 16
339 Qatar 13365 A 16 16
340 Qatar 13366 C 16 16
341 Qatar 13367 A 16 16
342 Qatar 13368 C 16 16
343 Qatar 13369 A 16 16
344 Qatar 13370 G 16 16
345 Qatar 13371 T 16 16
346 Qatar 13372 C 16 16
347 Qatar 13373 T 16 16
348 Qatar 13374 G 16 16
349 Qatar 13375 T 16 16
350 Qatar 13376 A 16 16
351 Qatar 13377 C 16 16
352 Qatar 13378 C 16 16
353 Qatar 13379 G 16 16
354 Qatar 13380 T 16 16
355 Qatar 13381 C 16 16
356 Qatar 13382 T 16 16
357 Qatar 13383 G 16 16
358 Qatar 13384 C 16 16
359 Qatar 13385 G 16 16
360 Qatar 13386 G 16 16
361 Qatar 13387 T 16 16
362 Qatar 13388 A 16 16
363 Qatar 13389 T 16 16
364 Qatar 13390 G 16 16
365 Qatar 13391 T 16 16
366 Qatar 13392 G 16 16
367 Qatar 13393 G 16 16
368 Qatar 13394 A 16 16
369 Qatar 13395 A 16 16
370 Qatar 13396 A 16 16
371 Qatar 13397 G 15 15
372 Qatar 13398 G 11 11
373 Qatar 13399 T 10 10
374 Qatar 13400 T 9 9
375 Qatar 13401 A 9 9
376 Qatar 13402 T 8 5
377 Qatar 13403 G 8 8
378 Qatar 13404 G 6 6
379 Qatar 13405 C 5 5
380 Qatar 13406 T 5 5
381 Qatar 13407 G 5 5
382 Qatar 13408 T 5 5
383 Qatar 13409 A 5 5
384 Qatar 13410 G 5 5
385 Qatar 13411 T 5 5
386 Qatar 13412 T 5 5
387 Qatar 13413 G 5 5
388 Qatar 13414 T 5 5
389 Qatar 13415 G 5 5
390 Qatar 13416 A 5 5
391 Qatar 13417 T 5 5
392 Qatar 13418 C 5 5
393 Qatar 13419 A 5 5
394 Qatar 13420 A 5 5
395 Qatar 13421 C 5 5
396 Qatar 13422 T 5 5
397 Qatar 13423 C 5 5
398 Qatar 13424 C 5 5
399 Qatar 13425 G 5 5
400 Qatar 13426 C 5 5
401 Qatar 13427 G 5 5
402 Qatar 13428 A 5 5
403 Qatar 13429 A 5 5
404 Qatar 13430 C 5 5
405 Qatar 13431 C 5 5
406 Qatar 13432 C 5 5
407 Qatar 13433 A 5 5
408 Qatar 13434 T 5 5
409 Qatar 13435 G 5 5
410 Qatar 13436 C 5 5
411 Qatar 13437 T 5 5
412 Qatar 13438 T 5 5
413 Qatar 13439 C 5 5
414 Qatar 13440 A 5 5
415 Qatar 13441 G 5 5