National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                   1    
C   39                                        
D   21     1                                  
E   12       1                                
F   15                                        
G   39           2                            
H   9                                        
I   12                                        
K   24                                        
L   24                   1                    
M   12               1                        
N   21                                        
P   24                                        
Q   18                                        
R   6   1                         1 1        
S   18                               1        
T   39               3                        
V   27               1                   4    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Portugal 13026 C 2415 2415
1 Portugal 13027 T 2416 2416
2 Portugal 13028 G 2416 2416
3 Portugal 13029 G 2416 2416
4 Portugal 13030 T 2416 2416
5 Portugal 13031 A 2416 2416
6 Portugal 13032 A 2416 2416
7 Portugal 13033 T 2416 2416
8 Portugal 13034 G 2416 2416
9 Portugal 13035 C 2419 2419
10 Portugal 13036 A 2419 2419
11 Portugal 13037 A 2419 2419
12 Portugal 13038 C 2419 2419
13 Portugal 13039 A 2419 2419
14 Portugal 13040 G 2419 2419
15 Portugal 13041 A 2419 2419
16 Portugal 13042 A 2419 2419
17 Portugal 13043 G 2419 2418
18 Portugal 13044 T 2419 2419
19 Portugal 13045 G 2419 2419
20 Portugal 13046 C 2419 2419
21 Portugal 13047 C 2419 2419
22 Portugal 13048 T 2419 2419
23 Portugal 13049 G 2419 2419
24 Portugal 13050 C 2419 2419
25 Portugal 13051 C 2419 2419
26 Portugal 13052 A 2419 2419
27 Portugal 13053 A 2419 2419
28 Portugal 13054 T 2419 2419
29 Portugal 13055 T 2419 2419
30 Portugal 13056 C 2419 2419
31 Portugal 13057 A T 2419 2417 Ser4264Ser
32 Portugal 13058 A 2419 2419
33 Portugal 13059 C T 2419 2390 Thr4265Ile
34 Portugal 13060 T 2419 2419
35 Portugal 13061 G A 2419 2416 Val4266Ile
36 Portugal 13062 T 2419 2419
37 Portugal 13063 A 2419 2419
38 Portugal 13064 T 2419 2419
39 Portugal 13065 T 2419 2419
40 Portugal 13066 A 2419 2419
41 Portugal 13067 T 2419 2419
42 Portugal 13068 C 2419 2419
43 Portugal 13069 T 2419 2419
44 Portugal 13070 T 2419 2419
45 Portugal 13071 T 2419 2419
46 Portugal 13072 C 2419 2419
47 Portugal 13073 T 2419 2419
48 Portugal 13074 G 2419 2419
49 Portugal 13075 T 2419 2419
50 Portugal 13076 G 2419 2419
51 Portugal 13077 C 2419 2419
52 Portugal 13078 T 2419 2419
53 Portugal 13079 T 2419 2419
54 Portugal 13080 T 2419 2419
55 Portugal 13081 T 2419 2419
56 Portugal 13082 G 2419 2419
57 Portugal 13083 C 2419 2419
58 Portugal 13084 T 2419 2419
59 Portugal 13085 G 2419 2419
60 Portugal 13086 T 2419 2419
61 Portugal 13087 A 2419 2419
62 Portugal 13088 G 2419 2419
63 Portugal 13089 A 2418 2418
64 Portugal 13090 T 2418 2418
65 Portugal 13091 G 2418 2418
66 Portugal 13092 C 2418 2418
67 Portugal 13093 T 2418 2418
68 Portugal 13094 G 2418 2418
69 Portugal 13095 C T 2418 2417 Ala4277Val
70 Portugal 13096 T 2419 2419
71 Portugal 13097 A 2419 2419
72 Portugal 13098 A 2419 2419
73 Portugal 13099 A 2419 2419
74 Portugal 13100 G 2419 2419
75 Portugal 13101 C 2419 2419
76 Portugal 13102 T 2419 2419
77 Portugal 13103 T 2419 2419
78 Portugal 13104 A 2419 2419
79 Portugal 13105 C 2419 2419
80 Portugal 13106 A 2419 2419
81 Portugal 13107 A 2419 2419
82 Portugal 13108 A 2419 2419
83 Portugal 13109 G 2419 2419
84 Portugal 13110 A 2419 2419
85 Portugal 13111 T 2419 2419
86 Portugal 13112 T 2419 2419
87 Portugal 13113 A 2419 2419
88 Portugal 13114 T 2419 2419
89 Portugal 13115 C T 2419 2416 Leu4284Leu
90 Portugal 13116 T 2419 2419
91 Portugal 13117 A 2419 2419
92 Portugal 13118 G 2419 2419
93 Portugal 13119 C 2419 2419
94 Portugal 13120 T 2419 2419
95 Portugal 13121 A 2419 2419
96 Portugal 13122 G 2419 2419
97 Portugal 13123 T 2419 2419
98 Portugal 13124 G 2419 2419
99 Portugal 13125 G 2419 2419
100 Portugal 13126 G A 2419 2418 Gly4287Gly
101 Portugal 13127 G 2419 2419
102 Portugal 13128 G 2419 2419
103 Portugal 13129 A 2419 2419
104 Portugal 13130 C 2419 2419
105 Portugal 13131 A 2419 2419
106 Portugal 13132 A 2419 2419
107 Portugal 13133 C 2419 2419
108 Portugal 13134 C 2419 2419
109 Portugal 13135 A 2419 2419
110 Portugal 13136 A 2419 2419
111 Portugal 13137 T 2419 2419
112 Portugal 13138 C 2419 2419
113 Portugal 13139 A 2419 2419
114 Portugal 13140 C 2419 2419
115 Portugal 13141 T 2419 2419
116 Portugal 13142 A 2419 2419
117 Portugal 13143 A 2419 2419
118 Portugal 13144 T 2419 2419
119 Portugal 13145 T 2419 2419
120 Portugal 13146 G 2419 2419
121 Portugal 13147 T 2419 2419
122 Portugal 13148 G 2419 2419
123 Portugal 13149 T 2419 2419
124 Portugal 13150 T 2419 2419
125 Portugal 13151 A 2419 2419
126 Portugal 13152 A 2419 2419
127 Portugal 13153 G 2419 2419
128 Portugal 13154 A 2419 2419
129 Portugal 13155 T 2419 2419
130 Portugal 13156 G 2419 2419
131 Portugal 13157 T 2419 2419
132 Portugal 13158 T 2419 2419
133 Portugal 13159 G 2419 2419
134 Portugal 13160 T 2419 2419
135 Portugal 13161 G 2419 2419
136 Portugal 13162 T 2419 2419
137 Portugal 13163 A 2419 2419
138 Portugal 13164 C 2419 2419
139 Portugal 13165 A 2419 2419
140 Portugal 13166 C 2419 2419
141 Portugal 13167 A 2419 2419
142 Portugal 13168 C 2419 2419
143 Portugal 13169 A 2419 2419
144 Portugal 13170 C 2419 2419
145 Portugal 13171 T 2419 2419
146 Portugal 13172 G 2419 2419
147 Portugal 13173 G 2419 2419
148 Portugal 13174 T 2419 2419
149 Portugal 13175 A 2419 2419
150 Portugal 13176 C 2419 2419
151 Portugal 13177 T 2420 2420
152 Portugal 13178 G 2420 2420
153 Portugal 13179 G 2420 2420
154 Portugal 13180 T 2420 2419
155 Portugal 13181 C 2420 2420
156 Portugal 13182 A 2420 2420
157 Portugal 13183 G 2420 2420
158 Portugal 13184 G 2420 2420
159 Portugal 13185 C 2420 2420
160 Portugal 13186 A 2420 2420
161 Portugal 13187 A 2420 2420
162 Portugal 13188 T 2420 2420
163 Portugal 13189 A 2420 2420
164 Portugal 13190 A 2420 2420
165 Portugal 13191 C 2420 2420
166 Portugal 13192 A 2420 2420
167 Portugal 13193 G 2420 2420
168 Portugal 13194 T 2420 2420
169 Portugal 13195 T C 2420 2419 Val4310Val
170 Portugal 13196 A 2420 2420
171 Portugal 13197 C 2420 2420
172 Portugal 13198 A 2420 2420
173 Portugal 13199 C 2420 2420
174 Portugal 13200 C 2420 2420
175 Portugal 13201 G 2420 2420
176 Portugal 13202 G 2420 2420
177 Portugal 13203 A 2420 2420
178 Portugal 13204 A G 2420 2419 Glu4313Glu
179 Portugal 13205 G 2420 2420
180 Portugal 13206 C 2420 2420
181 Portugal 13207 C 2420 2420
182 Portugal 13208 A 2420 2420
183 Portugal 13209 A 2420 2420
184 Portugal 13210 T 2420 2420
185 Portugal 13211 A 2420 2420
186 Portugal 13212 T 2420 2420
187 Portugal 13213 G 2420 2420
188 Portugal 13214 G 2420 2420
189 Portugal 13215 A 2420 2420
190 Portugal 13216 T 2420 2420
191 Portugal 13217 C 2420 2420
192 Portugal 13218 A 2420 2420
193 Portugal 13219 A 2420 2420
194 Portugal 13220 G 2420 2420
195 Portugal 13221 A 2420 2420
196 Portugal 13222 A 2420 2420
197 Portugal 13223 T 2420 2420
198 Portugal 13224 C 2420 2420
199 Portugal 13225 C 2420 2420
200 Portugal 13226 T 2420 2420
201 Portugal 13227 T 2420 2420
202 Portugal 13228 T 2420 2420
203 Portugal 13229 G 2420 2420
204 Portugal 13230 G 2420 2420
205 Portugal 13231 T 2420 2420
206 Portugal 13232 G 2420 2420
207 Portugal 13233 G 2420 2420
208 Portugal 13234 T 2420 2420
209 Portugal 13235 G 2420 2420
210 Portugal 13236 C 2420 2420
211 Portugal 13237 A 2420 2420
212 Portugal 13238 T 2420 2420
213 Portugal 13239 C 2420 2420
214 Portugal 13240 G 2420 2420
215 Portugal 13241 T 2420 2420
216 Portugal 13242 G 2420 2420
217 Portugal 13243 T 2420 2420
218 Portugal 13244 T 2420 2420
219 Portugal 13245 G 2420 2420
220 Portugal 13246 T 2420 2420
221 Portugal 13247 C 2420 2420
222 Portugal 13248 T 2420 2420
223 Portugal 13249 G 2420 2420
224 Portugal 13250 T 2420 2420
225 Portugal 13251 A 2420 2420
226 Portugal 13252 C 2420 2420
227 Portugal 13253 T 2420 2420
228 Portugal 13254 G 2420 2420
229 Portugal 13255 C 2420 2420
230 Portugal 13256 C 2420 2420
231 Portugal 13257 G 2420 2420
232 Portugal 13258 T 2420 2420
233 Portugal 13259 T 2420 2420
234 Portugal 13260 G 2420 2420
235 Portugal 13261 C 2420 2420
236 Portugal 13262 C 2420 2420
237 Portugal 13263 A 2420 2420
238 Portugal 13264 C 2420 2420
239 Portugal 13265 A 2420 2420
240 Portugal 13266 T 2420 2420
241 Portugal 13267 A 2420 2420
242 Portugal 13268 G 2420 2420
243 Portugal 13269 A 2420 2420
244 Portugal 13270 T 2420 2420
245 Portugal 13271 C 2420 2420
246 Portugal 13272 A 2420 2420
247 Portugal 13273 T 2420 2420
248 Portugal 13274 C 2420 2420
249 Portugal 13275 C 2420 2420
250 Portugal 13276 A 2420 2420
251 Portugal 13277 A 2420 2420
252 Portugal 13278 A 2420 2420
253 Portugal 13279 T 2420 2420
254 Portugal 13280 C 2420 2420
255 Portugal 13281 C 2420 2420
256 Portugal 13282 T 2420 2420
257 Portugal 13283 A 2420 2420
258 Portugal 13284 A 2420 2420
259 Portugal 13285 A 2420 2420
260 Portugal 13286 G 2420 2420
261 Portugal 13287 G 2420 2420
262 Portugal 13288 A C 2420 2418 Gly4341Gly
263 Portugal 13289 T 2420 2420
264 Portugal 13290 T 2420 2420
265 Portugal 13291 T 2420 2420
266 Portugal 13292 T 2420 2420
267 Portugal 13293 G 2419 2419
268 Portugal 13294 T 2419 2419
269 Portugal 13295 G 2419 2419
270 Portugal 13296 A 2419 2418
271 Portugal 13297 C T 2419 2417 Asp4344Asp
272 Portugal 13298 T 2419 2418
273 Portugal 13299 T 2419 2418
274 Portugal 13300 A 2419 2418
275 Portugal 13301 A 2419 2418
276 Portugal 13302 A 2419 2418
277 Portugal 13303 A 2419 2418
278 Portugal 13304 G 2419 2418
279 Portugal 13305 G 2419 2418
280 Portugal 13306 T 2419 2418
281 Portugal 13307 A 2419 2418
282 Portugal 13308 A 2419 2418
283 Portugal 13309 G 2419 2418
284 Portugal 13310 T 2419 2418
285 Portugal 13311 A 2419 2418
286 Portugal 13312 T 2419 2418
287 Portugal 13313 G 2419 2419
288 Portugal 13314 T 2419 2419
289 Portugal 13315 A 2419 2419
290 Portugal 13316 C 2419 2419
291 Portugal 13317 A 2419 2419
292 Portugal 13318 A 2420 2420
293 Portugal 13319 A 2420 2420
294 Portugal 13320 T 2420 2420
295 Portugal 13321 A 2420 2420
296 Portugal 13322 C 2420 2420
297 Portugal 13323 C 2420 2420
298 Portugal 13324 T 2420 2420
299 Portugal 13325 A 2420 2420
300 Portugal 13326 C T 2420 2419 Thr4354Ile
301 Portugal 13327 A 2420 2420
302 Portugal 13328 A 2420 2420
303 Portugal 13329 C T 2420 2418 Thr4355Ile
304 Portugal 13330 T 2420 2420
305 Portugal 13331 T 2420 2420
306 Portugal 13332 G 2420 2420
307 Portugal 13333 T 2420 2420
308 Portugal 13334 G 2420 2420
309 Portugal 13335 C 2420 2420
310 Portugal 13336 T 2420 2420
311 Portugal 13337 A 2420 2420
312 Portugal 13338 A 2420 2420
313 Portugal 13339 T 2420 2420
314 Portugal 13340 G 2420 2420
315 Portugal 13341 A 2420 2420
316 Portugal 13342 C 2420 2420
317 Portugal 13343 C 2420 2420
318 Portugal 13344 C 2420 2420
319 Portugal 13345 T 2420 2420
320 Portugal 13346 G 2420 2420
321 Portugal 13347 T 2420 2420
322 Portugal 13348 G T 2420 2418 Val4361Val
323 Portugal 13349 G 2419 2419
324 Portugal 13350 G 2418 2418
325 Portugal 13351 T 2418 2418
326 Portugal 13352 T 2418 2418
327 Portugal 13353 T 2418 2418
328 Portugal 13354 T 2418 2418
329 Portugal 13355 A 2418 2418
330 Portugal 13356 C 2418 2418
331 Portugal 13357 A 2417 2417
332 Portugal 13358 C 2416 2416
333 Portugal 13359 T 2416 2416
334 Portugal 13360 T 2416 2416
335 Portugal 13361 A 2416 2416
336 Portugal 13362 A 2415 2415
337 Portugal 13363 A 2414 2414
338 Portugal 13364 A 2414 2414
339 Portugal 13365 A 2412 2412
340 Portugal 13366 C 2412 2412
341 Portugal 13367 A 2412 2412
342 Portugal 13368 C 2412 2412
343 Portugal 13369 A 2411 2411
344 Portugal 13370 G 2411 2411
345 Portugal 13371 T 2411 2411
346 Portugal 13372 C T 2410 2409 Val4369Val
347 Portugal 13373 T 2410 2410
348 Portugal 13374 G 2410 2409
349 Portugal 13375 T 2410 2410
350 Portugal 13376 A 2410 2410
351 Portugal 13377 C 2410 2410
352 Portugal 13378 C 2398 2397
353 Portugal 13379 G 2391 2389
354 Portugal 13380 T 2375 2369
355 Portugal 13381 C T 2374 2371 Val4372Val
356 Portugal 13382 T 2373 2369
357 Portugal 13383 G 2368 2364
358 Portugal 13384 C 2367 2360
359 Portugal 13385 G 2367 2362
360 Portugal 13386 G 2367 2362
361 Portugal 13387 T 2360 2355
362 Portugal 13388 A 2355 2349
363 Portugal 13389 T 2351 2345
364 Portugal 13390 G T 2350 2342 Met4375Ile
365 Portugal 13391 T 2349 2342
366 Portugal 13392 G 2337 2328
367 Portugal 13393 G 2333 2322
368 Portugal 13394 A 2320 2307
369 Portugal 13395 A 2306 2286
370 Portugal 13396 A 2306 2290
371 Portugal 13397 G 2306 2293
372 Portugal 13398 G 2306 2295
373 Portugal 13399 T 2301 2283
374 Portugal 13400 T 2299 2292
375 Portugal 13401 A 2297 2290
376 Portugal 13402 T 2295 2286
377 Portugal 13403 G 2295 2289
378 Portugal 13404 G 2294 2291
379 Portugal 13405 C 2294 2290
380 Portugal 13406 T 2294 2289
381 Portugal 13407 G 2294 2288
382 Portugal 13408 T 2294 2289
383 Portugal 13409 A 2294 2290
384 Portugal 13410 G 2294 2291
385 Portugal 13411 T 2294 2288
386 Portugal 13412 T 2294 2289
387 Portugal 13413 G 2294 2294
388 Portugal 13414 T 2294 2293
389 Portugal 13415 G 2294 2293
390 Portugal 13416 A 2294 2290
391 Portugal 13417 T 2294 2288
392 Portugal 13418 C 2294 2293
393 Portugal 13419 A 2294 2292
394 Portugal 13420 A 2293 2291
395 Portugal 13421 C 2293 2292
396 Portugal 13422 T 2293 2293
397 Portugal 13423 C 2293 2293
398 Portugal 13424 C T,A 2293 2291 Arg4387Cys-p.Arg4387Ser
399 Portugal 13425 G 2293 2292
400 Portugal 13426 C T 2293 2292 Arg4387Arg
401 Portugal 13427 G 2293 2293
402 Portugal 13428 A 2293 2288
403 Portugal 13429 A 2292 2281
404 Portugal 13430 C 2292 2291
405 Portugal 13431 C 2292 2292
406 Portugal 13432 C 2292 2292
407 Portugal 13433 A 2292 2289
408 Portugal 13434 T 2292 2292
409 Portugal 13435 G 2292 2292
410 Portugal 13436 C 2292 2292
411 Portugal 13437 T 2292 2291
412 Portugal 13438 T 2292 2290
413 Portugal 13439 C 2292 2292
414 Portugal 13440 A 2292 2292
415 Portugal 13441 G 2289 2289