National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15         1                              
G   39                                        
H   9             1                          
I   12                                        
K   24                                        
L   24                           1            
M   12                                        
N   21                                        
P   24                         1              
Q   18                                        
R   6                                        
S   18                                        
T   39               1                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Poland 13026 C 434 434
1 Poland 13027 T 434 434
2 Poland 13028 G 434 434
3 Poland 13029 G 434 434
4 Poland 13030 T 434 434
5 Poland 13031 A 434 434
6 Poland 13032 A 434 434
7 Poland 13033 T 434 434
8 Poland 13034 G 434 434
9 Poland 13035 C 434 434
10 Poland 13036 A 434 434
11 Poland 13037 A 434 434
12 Poland 13038 C T 434 433 Thr4258Ile
13 Poland 13039 A 434 434
14 Poland 13040 G 434 434
15 Poland 13041 A 434 434
16 Poland 13042 A 434 434
17 Poland 13043 G 434 434
18 Poland 13044 T 434 434
19 Poland 13045 G 434 434
20 Poland 13046 C 434 434
21 Poland 13047 C 434 434
22 Poland 13048 T 434 434
23 Poland 13049 G 434 434
24 Poland 13050 C 434 434
25 Poland 13051 C 434 434
26 Poland 13052 A 434 434
27 Poland 13053 A 434 434
28 Poland 13054 T 434 434
29 Poland 13055 T 434 434
30 Poland 13056 C 434 434
31 Poland 13057 A 434 434
32 Poland 13058 A 434 434
33 Poland 13059 C 434 434
34 Poland 13060 T 434 434
35 Poland 13061 G 434 434
36 Poland 13062 T 434 434
37 Poland 13063 A 434 434
38 Poland 13064 T 434 434
39 Poland 13065 T 434 434
40 Poland 13066 A 434 434
41 Poland 13067 T 434 434
42 Poland 13068 C 434 434
43 Poland 13069 T 434 434
44 Poland 13070 T 434 434
45 Poland 13071 T 434 434
46 Poland 13072 C T 434 433 Phe4269Phe
47 Poland 13073 T 434 434
48 Poland 13074 G 434 434
49 Poland 13075 T 434 434
50 Poland 13076 G 434 434
51 Poland 13077 C 434 434
52 Poland 13078 T 434 434
53 Poland 13079 T 434 434
54 Poland 13080 T 434 434
55 Poland 13081 T 434 434
56 Poland 13082 G 434 434
57 Poland 13083 C 434 434
58 Poland 13084 T 434 434
59 Poland 13085 G 434 434
60 Poland 13086 T 434 434
61 Poland 13087 A 434 434
62 Poland 13088 G 434 434
63 Poland 13089 A 434 434
64 Poland 13090 T 434 434
65 Poland 13091 G 434 434
66 Poland 13092 C 434 434
67 Poland 13093 T 434 434
68 Poland 13094 G 434 434
69 Poland 13095 C 434 434
70 Poland 13096 T 434 434
71 Poland 13097 A 434 434
72 Poland 13098 A 434 434
73 Poland 13099 A 434 434
74 Poland 13100 G 434 434
75 Poland 13101 C 434 433
76 Poland 13102 T 434 433
77 Poland 13103 T 434 433
78 Poland 13104 A 434 433
79 Poland 13105 C 434 433
80 Poland 13106 A 434 433
81 Poland 13107 A 434 433
82 Poland 13108 A 434 433
83 Poland 13109 G 434 433
84 Poland 13110 A 434 433
85 Poland 13111 T 434 433
86 Poland 13112 T 434 433
87 Poland 13113 A 434 433
88 Poland 13114 T 434 433
89 Poland 13115 C 434 433
90 Poland 13116 T A 434 432 Leu4284Gln
91 Poland 13117 A 434 433
92 Poland 13118 G 434 433
93 Poland 13119 C 434 433
94 Poland 13120 T 434 433
95 Poland 13121 A 434 433
96 Poland 13122 G 434 433
97 Poland 13123 T 434 433
98 Poland 13124 G 434 433
99 Poland 13125 G 434 433
100 Poland 13126 G 434 433
101 Poland 13127 G 434 433
102 Poland 13128 G 434 433
103 Poland 13129 A 434 433
104 Poland 13130 C 434 433
105 Poland 13131 A 434 433
106 Poland 13132 A 434 433
107 Poland 13133 C 434 433
108 Poland 13134 C 434 433
109 Poland 13135 A 434 433
110 Poland 13136 A 434 433
111 Poland 13137 T 434 433
112 Poland 13138 C 434 433
113 Poland 13139 A 434 433
114 Poland 13140 C 434 433
115 Poland 13141 T 434 433
116 Poland 13142 A 434 433
117 Poland 13143 A 434 433
118 Poland 13144 T 434 433
119 Poland 13145 T 434 433
120 Poland 13146 G 434 433
121 Poland 13147 T 434 433
122 Poland 13148 G 434 433
123 Poland 13149 T 434 433
124 Poland 13150 T 434 433
125 Poland 13151 A 434 434
126 Poland 13152 A 434 434
127 Poland 13153 G 434 434
128 Poland 13154 A 434 434
129 Poland 13155 T 434 434
130 Poland 13156 G 434 434
131 Poland 13157 T 434 434
132 Poland 13158 T 434 434
133 Poland 13159 G 434 434
134 Poland 13160 T 434 434
135 Poland 13161 G 434 434
136 Poland 13162 T 434 434
137 Poland 13163 A 434 434
138 Poland 13164 C 434 434
139 Poland 13165 A 434 434
140 Poland 13166 C 434 434
141 Poland 13167 A 434 434
142 Poland 13168 C T 434 433 His4301His
143 Poland 13169 A 434 434
144 Poland 13170 C 434 434
145 Poland 13171 T 434 434
146 Poland 13172 G 434 434
147 Poland 13173 G 434 434
148 Poland 13174 T 434 434
149 Poland 13175 A 434 434
150 Poland 13176 C 434 434
151 Poland 13177 T 434 434
152 Poland 13178 G 434 434
153 Poland 13179 G 434 434
154 Poland 13180 T 434 434
155 Poland 13181 C 434 434
156 Poland 13182 A 434 434
157 Poland 13183 G 434 434
158 Poland 13184 G 434 434
159 Poland 13185 C 434 434
160 Poland 13186 A 434 434
161 Poland 13187 A 434 434
162 Poland 13188 T 434 434
163 Poland 13189 A 434 434
164 Poland 13190 A 434 434
165 Poland 13191 C 434 434
166 Poland 13192 A 434 433
167 Poland 13193 G 434 434
168 Poland 13194 T 434 434
169 Poland 13195 T 434 434
170 Poland 13196 A 434 434
171 Poland 13197 C 434 434
172 Poland 13198 A 434 434
173 Poland 13199 C 434 434
174 Poland 13200 C 434 434
175 Poland 13201 G T 434 433 Pro4312Pro
176 Poland 13202 G 434 434
177 Poland 13203 A 434 434
178 Poland 13204 A 434 434
179 Poland 13205 G 434 434
180 Poland 13206 C 434 434
181 Poland 13207 C 434 434
182 Poland 13208 A 434 434
183 Poland 13209 A 434 434
184 Poland 13210 T 434 434
185 Poland 13211 A 434 434
186 Poland 13212 T 434 434
187 Poland 13213 G 434 434
188 Poland 13214 G 434 434
189 Poland 13215 A 434 434
190 Poland 13216 T 434 434
191 Poland 13217 C 434 434
192 Poland 13218 A 434 434
193 Poland 13219 A 434 434
194 Poland 13220 G 434 434
195 Poland 13221 A 434 434
196 Poland 13222 A 434 434
197 Poland 13223 T 434 434
198 Poland 13224 C 434 434
199 Poland 13225 C 434 434
200 Poland 13226 T 434 434
201 Poland 13227 T 434 434
202 Poland 13228 T 434 434
203 Poland 13229 G 434 434
204 Poland 13230 G 434 434
205 Poland 13231 T 434 434
206 Poland 13232 G 434 434
207 Poland 13233 G 434 434
208 Poland 13234 T 434 434
209 Poland 13235 G 434 434
210 Poland 13236 C 434 434
211 Poland 13237 A 434 434
212 Poland 13238 T 434 434
213 Poland 13239 C 434 434
214 Poland 13240 G 434 434
215 Poland 13241 T 434 434
216 Poland 13242 G 434 434
217 Poland 13243 T 434 434
218 Poland 13244 T 434 434
219 Poland 13245 G 434 434
220 Poland 13246 T 434 434
221 Poland 13247 C 434 434
222 Poland 13248 T 434 434
223 Poland 13249 G 434 434
224 Poland 13250 T 434 434
225 Poland 13251 A 434 434
226 Poland 13252 C 434 434
227 Poland 13253 T 434 434
228 Poland 13254 G 434 434
229 Poland 13255 C 434 434
230 Poland 13256 C 434 434
231 Poland 13257 G 434 434
232 Poland 13258 T 434 434
233 Poland 13259 T 434 434
234 Poland 13260 G 434 434
235 Poland 13261 C 434 434
236 Poland 13262 C 434 434
237 Poland 13263 A 434 434
238 Poland 13264 C 434 434
239 Poland 13265 A 434 434
240 Poland 13266 T 434 434
241 Poland 13267 A 434 434
242 Poland 13268 G 434 434
243 Poland 13269 A 434 434
244 Poland 13270 T 434 434
245 Poland 13271 C 434 434
246 Poland 13272 A 434 434
247 Poland 13273 T 434 434
248 Poland 13274 C 434 434
249 Poland 13275 C 434 434
250 Poland 13276 A 434 434
251 Poland 13277 A 434 434
252 Poland 13278 A 434 434
253 Poland 13279 T 434 434
254 Poland 13280 C 434 434
255 Poland 13281 C 434 434
256 Poland 13282 T 434 434
257 Poland 13283 A 434 434
258 Poland 13284 A 434 434
259 Poland 13285 A 434 434
260 Poland 13286 G 434 434
261 Poland 13287 G 434 434
262 Poland 13288 A 434 434
263 Poland 13289 T 434 434
264 Poland 13290 T 434 434
265 Poland 13291 T 434 434
266 Poland 13292 T 434 434
267 Poland 13293 G 434 434
268 Poland 13294 T 434 434
269 Poland 13295 G 434 434
270 Poland 13296 A 434 434
271 Poland 13297 C 434 434
272 Poland 13298 T 434 434
273 Poland 13299 T 434 434
274 Poland 13300 A 434 434
275 Poland 13301 A 434 434
276 Poland 13302 A 434 434
277 Poland 13303 A 434 434
278 Poland 13304 G 434 434
279 Poland 13305 G 434 433
280 Poland 13306 T 434 433
281 Poland 13307 A 434 433
282 Poland 13308 A 434 434
283 Poland 13309 G 434 434
284 Poland 13310 T 434 434
285 Poland 13311 A 434 434
286 Poland 13312 T 434 434
287 Poland 13313 G 434 434
288 Poland 13314 T 434 434
289 Poland 13315 A 434 434
290 Poland 13316 C 434 434
291 Poland 13317 A 434 434
292 Poland 13318 A 434 434
293 Poland 13319 A 434 434
294 Poland 13320 T 434 434
295 Poland 13321 A 434 434
296 Poland 13322 C 434 434
297 Poland 13323 C 434 434
298 Poland 13324 T 434 434
299 Poland 13325 A 434 434
300 Poland 13326 C 434 434
301 Poland 13327 A 434 434
302 Poland 13328 A 434 434
303 Poland 13329 C 434 434
304 Poland 13330 T 434 434
305 Poland 13331 T 434 434
306 Poland 13332 G 434 434
307 Poland 13333 T 434 434
308 Poland 13334 G 434 434
309 Poland 13335 C 434 434
310 Poland 13336 T 434 434
311 Poland 13337 A 434 434
312 Poland 13338 A 434 434
313 Poland 13339 T 434 434
314 Poland 13340 G 434 434
315 Poland 13341 A 434 434
316 Poland 13342 C 434 434
317 Poland 13343 C 434 434
318 Poland 13344 C 434 434
319 Poland 13345 T 434 434
320 Poland 13346 G 434 434
321 Poland 13347 T 434 434
322 Poland 13348 G 434 434
323 Poland 13349 G 434 434
324 Poland 13350 G 434 434
325 Poland 13351 T 434 434
326 Poland 13352 T 434 434
327 Poland 13353 T 434 434
328 Poland 13354 T 434 434
329 Poland 13355 A 434 434
330 Poland 13356 C 434 434
331 Poland 13357 A 434 434
332 Poland 13358 C 434 434
333 Poland 13359 T 434 434
334 Poland 13360 T 434 434
335 Poland 13361 A 434 434
336 Poland 13362 A 434 434
337 Poland 13363 A 434 434
338 Poland 13364 A 434 434
339 Poland 13365 A 434 434
340 Poland 13366 C 434 434
341 Poland 13367 A 434 434
342 Poland 13368 C 434 434
343 Poland 13369 A 434 434
344 Poland 13370 G 434 434
345 Poland 13371 T 434 434
346 Poland 13372 C 434 434
347 Poland 13373 T 434 434
348 Poland 13374 G 434 434
349 Poland 13375 T 434 434
350 Poland 13376 A 434 434
351 Poland 13377 C 434 434
352 Poland 13378 C 434 434
353 Poland 13379 G 434 434
354 Poland 13380 T 434 434
355 Poland 13381 C 434 434
356 Poland 13382 T 434 434
357 Poland 13383 G 434 434
358 Poland 13384 C 434 434
359 Poland 13385 G 434 434
360 Poland 13386 G 434 434
361 Poland 13387 T 434 434
362 Poland 13388 A 434 434
363 Poland 13389 T 434 434
364 Poland 13390 G 434 434
365 Poland 13391 T 434 434
366 Poland 13392 G 434 434
367 Poland 13393 G 434 434
368 Poland 13394 A 434 434
369 Poland 13395 A 434 434
370 Poland 13396 A 434 434
371 Poland 13397 G 434 434
372 Poland 13398 G 434 434
373 Poland 13399 T 434 434
374 Poland 13400 T 434 434
375 Poland 13401 A 434 434
376 Poland 13402 T 434 434
377 Poland 13403 G 434 434
378 Poland 13404 G 434 434
379 Poland 13405 C 434 434
380 Poland 13406 T 434 434
381 Poland 13407 G 434 434
382 Poland 13408 T 434 434
383 Poland 13409 A 434 434
384 Poland 13410 G 434 434
385 Poland 13411 T 434 434
386 Poland 13412 T 434 434
387 Poland 13413 G 434 434
388 Poland 13414 T 434 434
389 Poland 13415 G 434 434
390 Poland 13416 A 434 434
391 Poland 13417 T 434 434
392 Poland 13418 C 434 434
393 Poland 13419 A 434 434
394 Poland 13420 A 434 434
395 Poland 13421 C 434 434
396 Poland 13422 T 434 434
397 Poland 13423 C 434 434
398 Poland 13424 C 434 434
399 Poland 13425 G 434 434
400 Poland 13426 C 434 434
401 Poland 13427 G 434 434
402 Poland 13428 A 434 434
403 Poland 13429 A 434 434
404 Poland 13430 C 434 434
405 Poland 13431 C 434 434
406 Poland 13432 C 434 434
407 Poland 13433 A 434 434
408 Poland 13434 T 434 434
409 Poland 13435 G 434 434
410 Poland 13436 C 434 434
411 Poland 13437 T 434 434
412 Poland 13438 T 434 434
413 Poland 13439 C 434 434
414 Poland 13440 A 434 434
415 Poland 13441 G 434 434